M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15132

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15132 12 0.25 Mlig455_058626

Neo: -

Age: -

 RYK Mlig455_058626 {REF} {Length: 1054} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=152.8]; Protein kinase domain [PF00069.27, score=69.9]} {Human: ENSG00000163785, RYK, receptor-like tyrosine kinase, [Score=176, Expect=5e-53]} {Mouse: ENSMUSG00000032547, Ryk, receptor-like tyrosine kinase, [Score=177, Expect=3e-53]} {Dmel: FBgn0024245, dnt, doughnut on 2, [Score=163, Expect=3e-48]} {Celegans: WBGene00003007, lin-18, Inactive tyrosine-protein kinase RYK, [Score=147, Expect=3e-42]} {Smed: dd_Smed_v6_12594_0_3, dd_Smed_v6_12594_0_3, [Score=181, Expect=1e-54]} {RNA1509_4740} {RNA1310_29116} {RNA815_12893}

Cumulative graph for MligTC455_15132

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.404 0.799 0.99991 1.00000
RegionR2 -1.477 0.799 0.99975 1.00000
RegionR3 -0.688 0.799 0.99988 1.00000
RegionR4 0.994 0.799 0.99985 1.00000
RegionR5 -0.473 0.799 0.99989 1.00000
RegionR6 -0.984 0.799 0.99988 1.00000
RegionR7 -0.138 0.799 0.99997 1.00000
RegionR8 0.361 0.799 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.632 0.799 0.99990 1.00000
RegenerationR2 2.813 0.799 0.05005 0.36918
RegenerationR3 2.265 0.799 0.39026 0.79631
RegenerationR4 2.471 0.799 0.27600 0.72143
RegenerationR5 2.195 0.799 0.24362 0.67683
RegenerationR6 1.439 0.799 0.48522 0.79523
RegenerationBL -1.134 0.799 0.99992 1.00000
RegenerationTP -1.126 0.799 0.99987 1.00000


Genes with expression patterns similar to MligTC455_15132

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15132 12 0.25 Mlig455_058626

Neo: -

Age: -

 RYK 2 - - - 1.000 1.000 - Mlig455_058626 {REF} {Length: 1054} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=152.8]; Protein kinase domain [PF00069.27, score=69.9]} {Human: ENSG00000163785, RYK, receptor-like tyrosine kinase, [Score=176, Expect=5e-53]} {Mouse: ENSMUSG00000032547, Ryk, receptor-like tyrosine kinase, [Score=177, Expect=3e-53]} {Dmel: FBgn0024245, dnt, doughnut on 2, [Score=163, Expect=3e-48]} {Celegans: WBGene00003007, lin-18, Inactive tyrosine-protein kinase RYK, [Score=147, Expect=3e-42]} {Smed: dd_Smed_v6_12594_0_3, dd_Smed_v6_12594_0_3, [Score=181, Expect=1e-54]} {RNA1509_4740} {RNA1310_29116} {RNA815_12893}
2. MligTC455_23926 9 0.19 Mlig455_020174

Neo: -

Age: -

 0.979 - - - 0.979 - - Mlig455_020174 {REF} {Length: 920} {Pfam: THAP domain [PF05485.14, score=27.7]} {RNA1509_42786} {RNA1310_55169} {RNA815_27173}
3. MligTC455_01681 7 0.15 Mlig455_006560

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_006560 {REF} {Length: 301} {NoTransDecoderORF}
4. MligTC455_12087 94 1.97 Mlig455_028142, Mlig455_063570

Neo: -

Age: Down-Down-Down

 SNAI2 0.961 - - - 0.961 - -

Mlig455_028142 {REF} {Length: 1403} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=70.9]; Zinc-finger double domain [PF13465.8, score=59.7]; C2H2-type zinc finger [PF13894.8, score=55.9]; C2H2-type zinc finger [PF13912.8, score=40.9]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=31.5]; Zinc-finger of C2H2 type [PF12874.9, score=30.3]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=27.5]} {Human: ENSG00000019549, SNAI2, snail family transcriptional repressor 2, [Score=182, Expect=4e-57]; ENSG00000185669, SNAI3, snail family transcriptional repressor 3, [Score=177, Expect=1e-54]; ENSG00000124216, SNAI1, snail family transcriptional repressor 1, [Score=173, Expect=2e-53]} {Mouse: ENSMUSG00000022676, Snai2, snail family zinc finger 2, [Score=182, Expect=3e-57]; ENSMUSG00000042821, Snai1, snail family zinc finger 1, [Score=176, Expect=1e-54]; ENSMUSG00000006587, Snai3, snail family zinc finger 3, [Score=173, Expect=3e-53]} {Dmel: FBgn0001983, wor, worniu, [Score=179, Expect=3e-53]} {Celegans: WBGene00019299, snai-1, SNAIl family zinc finger 2 transcription factor homolog, [Score=137, Expect=6e-41]} {Smed: dd_Smed_v6_10216_0_1, dd_Smed_v6_10216_0_1, [Score=179, Expect=6e-56]} {RNA1509_43471} {RNA1310_31295.1} {RNA815_31028}

Mlig455_063570 {REF} {Length: 2075} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=82.3]; C2H2-type zinc finger [PF13894.8, score=65.4]; Zinc-finger double domain [PF13465.8, score=58.7]; C2H2-type zinc finger [PF13912.8, score=37.3]; Zinc-finger of C2H2 type [PF12874.9, score=36.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=35.1]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=29.3]} {Human: ENSG00000019549, SNAI2, snail family transcriptional repressor 2, [Score=197, Expect=1e-60]} {Mouse: ENSMUSG00000022676, Snai2, snail family zinc finger 2, [Score=197, Expect=9e-61]} {Dmel: FBgn0001983, wor, worniu, [Score=194, Expect=4e-57]} {Celegans: WBGene00019299, snai-1, SNAIl family zinc finger 2 transcription factor homolog, [Score=148, Expect=3e-43]} {Smed: dd_Smed_v6_10216_0_1, dd_Smed_v6_10216_0_1, [Score=189, Expect=1e-57]} {RNA1509_43471} {RNA1310_31295.1} {RNA815_31028}
5. MligTC455_12349 63 1.31 Mlig455_035838

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R2: 8.898/0.00005

 SSUH2 0.959 - - - 0.959 - - Mlig455_035838 {REF} {Length: 2048} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=136, Expect=1e-35]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=95.5, Expect=2e-21]} {Celegans: WBGene00013455, ssu-2, Suppressor of Stomatin mutant Uncoordination, [Score=129, Expect=4e-33]} {RNA1509_54234} {RNA1310_28595, RNA1509_54234} {RNA1509_54234, RNA815_19550}
6. MligTC455_39903 11 0.24 Mlig455_000444, Mlig455_000505

Neo: -

Age: -

 0.958 - - - 0.958 - -

Mlig455_000444 {REF} {Length: 578} {NoTransDecoderORF}

Mlig455_000505 {REF} {Length: 587} {NoTransDecoderORF}
7. MligTC455_42348 104 2.17 Mlig455_014821

Neo: -

Age: -

 LNX2 0.957 - - - - 0.957 - Mlig455_014821 {REF} {Length: 3656} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=23.5} {Pfam: Ring finger domain [PF13639.8, score=47.2]; RING-H2 zinc finger domain [PF12678.9, score=38.4]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=37.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=31.2]; Zinc-ribbon, C4HC2 type [PF17120.7, score=19.9]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.1]; RING-type zinc-finger [PF13445.8, score=18.8]; RING-variant domain [PF12906.9, score=18.7]} {Human: ENSG00000139517, LNX2, ligand of numb-protein X 2, [Score=51.2, Expect=2e-06]} {Mouse: ENSMUSG00000038611, Phrf1, PHD and ring finger domains 1, [Score=62.4, Expect=5e-10]} {Smed: dd_Smed_v6_8691_0_1, dd_Smed_v6_8691_0_1, [Score=46.6, Expect=2e-06]} {RNA1509_35602} {RNA1310_28956} {RNA815_19633}
8. MligTC455_09196 28 0.59 Mlig455_046836

Neo: -

Age: -

 0.954 - - - 0.954 - - Mlig455_046836 {REF} {Length: 3502} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=187.1]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=55.1, Expect=2e-07]} {Celegans: WBGene00006832, unc-105, Degenerin-like protein unc-105, [Score=62.4, Expect=9e-10]} {Smed: dd_Smed_v6_8949_0_1, dd_Smed_v6_8949_0_1, [Score=75.1, Expect=6e-14]} {RNA1509_28410} {RNA1310_44135} {RNA815_33213}
9. MligTC455_43445 98 2.05 Mlig455_043288

Neo: -

Age: -

 0.954 - - - 0.954 - - Mlig455_043288 {REF} {Length: 1770} {TRANSSPLICED} {Pfam: NICE-3 protein [PF07406.13, score=86.6]} {Dmel: FBgn0034172, CG6665, [Score=57.8, Expect=2e-09]} {RNA1509_24375} {RNA1310_15514.2} {RNA815_13288}
10. MligTC455_35903 15 0.31 Mlig455_058048

Neo: -

Age: logFC(26M/2M)=0.630

 0.952 - - - - 0.952 - Mlig455_058048 {REF} {Length: 1797} {TRANSSPLICED} {Pfam: Glycosyl hydrolase family 45 [PF02015.18, score=242.6]; PAN domain [PF14295.8, score=25.0]} {RNA1509_37047} {RNA1310_28208} {RNA815_11959}
11. MligTC455_30491 31 0.65 Mlig455_008764

Neo: Int S/G2/M

Age: Up-Down-Down

Region-enriched R4: 5.721/0.00005

 PPEF1 0.95 - - - 0.950 - - Mlig455_008764 {REF} {Length: 4579} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=97.3]; EF-hand domain pair [PF13499.8, score=70.7]; EF hand [PF00036.34, score=60.1]; EF-hand domain pair [PF13833.8, score=56.7]; EF-hand domain [PF13405.8, score=46.2]; EF hand [PF13202.8, score=40.6]; PPP5 TPR repeat region [PF08321.14, score=33.9]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=20.5]; IQ calmodulin-binding motif [PF00612.29, score=19.7]} {Human: ENSG00000086717, PPEF1, protein phosphatase with EF-hand domain 1, [RH, Score=563, Expect=0.0]} {Mouse: ENSMUSG00000062168, Ppef1, protein phosphatase with EF hand calcium-binding domain 1, [RH, Score=552, Expect=0.0]} {Dmel: FBgn0265959, rdgC, retinal degeneration C, [RH, Score=552, Expect=0.0]} {Celegans: WBGene00003969, pef-1, Serine/threonine-protein phosphatase with EF-hands pef-1, [RH, Score=624, Expect=0.0]} {Smed: dd_Smed_v6_11874_0_1, dd_Smed_v6_11874_0_1, [RH, Score=707, Expect=0.0]} {RNA1509_5920} {RNA1310_46136} {RNA815_2260.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA