M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15176

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15176 21 0.43 Mlig455_021092

Neo: -

Age: -

 Mlig455_021092 {REF} {Length: 5532} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=118.2]; Endonuclease-reverse transcriptase [PF14529.8, score=76.5]} {RNA1509_7353} {RNA1310_1123.1} {RNA815_252.1}

Cumulative graph for MligTC455_15176

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.376 0.928 0.99996 1.00000
RegionR2 0.994 0.928 0.99999 1.00000
RegionR3 -0.108 0.928 0.99995 1.00000
RegionR4 -1.188 0.928 0.99982 1.00000
RegionR5 -0.611 0.928 0.99988 1.00000
RegionR6 -0.187 0.928 0.99998 1.00000
RegionR7 0.581 0.928 0.99995 1.00000
RegionR8 0.896 0.928 0.99994 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.446 0.928 0.99999 1.00000
RegenerationR2 4.565 0.928 0.00079 0.04042
RegenerationR3 3.903 0.928 0.05317 0.39764
RegenerationR4 4.106 0.928 0.01845 0.21299
RegenerationR5 2.72 0.928 0.07438 0.42669
RegenerationR6 3.164 0.928 0.12071 0.42754
RegenerationBL 0.569 0.928 0.63880 0.97782
RegenerationTP 3.235 0.928 0.25550 0.70271


Genes with expression patterns similar to MligTC455_15176

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15176 21 0.43 Mlig455_021092

Neo: -

Age: -

 2 - - - - 1.000 1.000 Mlig455_021092 {REF} {Length: 5532} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=118.2]; Endonuclease-reverse transcriptase [PF14529.8, score=76.5]} {RNA1509_7353} {RNA1310_1123.1} {RNA815_252.1}
2. MligTC455_39381 20 0.41 Mlig455_002242, Mlig455_010254, Mlig455_020895, Mlig455_022334, Mlig455_025586, Mlig455_028034, Mlig455_049206, Mlig455_054733, Mlig455_066851

Neo: -

Age: Up-Down-Down

 0.987 - - - - 0.987 -

Mlig455_002242 {REF} {Length: 2346} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.1}

Mlig455_010254 {REF} {Length: 1852} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=126.2]; Endonuclease-reverse transcriptase [PF14529.8, score=76.5]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.2}

Mlig455_020895 {REF} {Length: 2070} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=128.2]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.2}

Mlig455_022334 {REF} {Length: 2636} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.1}

Mlig455_025586 {REF} {Length: 3599} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1188} {RNA815_252.1}

Mlig455_028034 {REF} {Length: 3299} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1188} {RNA815_252.1}

Mlig455_049206 {REF} {Length: 2616} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=60.3]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.2}

Mlig455_054733 {REF} {Length: 460} {Pfam: Endonuclease-reverse transcriptase [PF14529.8, score=76.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=75.3]; RNase H [PF00075.26, score=47.2]} {RNA1509_50041} {RNA1310_1659} {RNA815_252.1}

Mlig455_066851 {REF} {Length: 4119} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.8]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1188} {RNA815_252.1}
3. MligTC455_16729 75 1.57 Mlig455_013762

Neo: -

Age: Up-Down-Down

Region-enriched R4: 4.685/0.03582

 0.97 - - - - 0.970 - Mlig455_013762 {REF} {Length: 2706} {Pfam: Glycine rich protein [PF12810.9, score=24.7]; PAN domain [PF00024.28, score=18.7]} {RNA1310_22079} {RNA815_24304}
4. MligTC455_38869 83 1.73 Mlig455_041415

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_041415 {REF} {Length: 1469} {Pfam: RNase H [PF00075.26, score=36.0]} {RNA1310_89877}
5. MligTC455_22207 33 0.68 Mlig455_014911

Neo: -

Age: -

 ASIC1 0.968 - - - - 0.968 - Mlig455_014911 {REF} {Length: 2866} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=169.0]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=53.5, Expect=9e-07]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=53.1, Expect=1e-06]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=65.9, Expect=4e-11]} {Smed: dd_Smed_v6_16346_0_1, dd_Smed_v6_16346_0_1, [Score=111, Expect=2e-25]} {RNA1509_26567} {RNA1310_9266.1} {RNA815_6618}
6. MligTC455_49417 47 0.97 Mlig455_018820

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_018820 {REF} {Length: 1221} {RNA1509_32397} {RNA1310_33051} {RNA815_37385}
7. MligTC455_54276 40 0.83 Mlig455_017653, Mlig455_058981

Neo: -

Age: -

 DIRAS2 0.966 - - - - 0.966 -

Mlig455_017653 {REF} {Length: 1214} {Pfam: Ras family [PF00071.24, score=143.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=61.6]; 50S ribosome-binding GTPase [PF01926.25, score=27.4]; ADP-ribosylation factor family [PF00025.23, score=24.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=19.1]} {Human: ENSG00000165023, DIRAS2, DIRAS family GTPase 2, [RH, Score=243, Expect=1e-81]} {Mouse: ENSMUSG00000047842, Diras2, DIRAS family, GTP-binding RAS-like 2, [RH, Score=243, Expect=3e-81]} {Dmel: FBgn0037754, CG8500, [RH, Score=226, Expect=1e-74]} {Celegans: WBGene00016911, drn-1, GTP-binding protein drn-1, [RH, Score=234, Expect=6e-78]} {Smed: dd_Smed_v6_10778_0_1, dd_Smed_v6_10778_0_1, [RH, Score=231, Expect=2e-77]} {RNA1310_105748}

Mlig455_058981 {REF} {Length: 3376} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=252.0]; Ras family [PF00071.24, score=140.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=59.1]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=43.1]; 50S ribosome-binding GTPase [PF01926.25, score=24.6]; Olfactory receptor [PF13853.8, score=24.0]} {Human: ENSG00000165023, DIRAS2, DIRAS family GTPase 2, [Score=243, Expect=3e-74]} {Mouse: ENSMUSG00000047842, Diras2, DIRAS family, GTP-binding RAS-like 2, [Score=241, Expect=6e-74]} {Dmel: FBgn0037754, CG8500, [RH, Score=224, Expect=2e-67]} {Celegans: WBGene00016911, drn-1, GTP-binding protein drn-1, [RH, Score=224, Expect=2e-67]} {Smed: dd_Smed_v6_20043_0_1, dd_Smed_v6_20043_0_1, [RH, Score=218, Expect=7e-62]} {RNA1509_25623} {RNA1310_22334} {RNA815_30775}
8. MligTC455_23975 87 1.82 Mlig455_004300, Mlig455_013677, Mlig455_035064, Mlig455_038062, Mlig455_041825, Mlig455_053049, Mlig455_065851, Mlig455_067880

Neo: Germline

Age: -

Region-enriched R4: 2.511/0.02468

 0.963 - - - - 0.963 -

Mlig455_004300 {REF} {Length: 605} {RNA1509_56714} {RNA1310_24363} {RNA815_4579}

Mlig455_013677 {REF} {Length: 683} {RNA1509_56714} {RNA1310_23291.1} {RNA815_4579}

Mlig455_035064 {REF} {Length: 1386} {RNA1509_39040} {RNA1310_24363} {RNA815_4579}

Mlig455_038062 {REF} {Length: 204} {NoTransDecoderORF} {RNA1509_56714} {RNA1310_24363} {RNA815_4579}

Mlig455_041825 {REF} {Length: 85} {NoTransDecoderORF} {RNA1509_56714} {RNA1310_24363} {RNA815_4579}

Mlig455_053049 {REF} {Length: 466} {RNA1509_56714} {RNA1310_24363} {RNA815_4579}

Mlig455_065851 {REF} {Length: 1227} {RNA1509_56714} {RNA1310_24363} {RNA815_4579}

Mlig455_067880 {REF} {Length: 674} {RNA1509_56714} {RNA1310_23291.1} {RNA815_4579}
9. MligTC455_01420 20 0.41 Mlig455_030565

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_030565 {REF} {Length: 1528} {RNA1509_15264} {RNA1310_26288} {RNA815_11358}
10. MligTC455_07395 44 0.92 Mlig455_059338

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_059338 {REF} {Length: 8046} {Pfam: HEAT repeats [PF13646.8, score=28.2]}
11. MligTC455_51638 17 0.35 Mlig455_025423

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_025423 {REF} {Length: 528} {NoTransDecoderORF} {RNA1509_54282} {RNA1310_113899}
12. MligTC455_12681 33 0.7 Mlig455_068475

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_068475 {REF} {Length: 2564} {NoTransDecoderORF} {RNA1509_52469} {RNA1310_36221} {RNA815_18198}
13. MligTC455_30299 190 3.96 Mlig455_066329

Neo: -

Age: logFC(26M/2M)=0.517

 0.954 - - - - 0.954 - Mlig455_066329 {REF} {Length: 4376} {Pfam: Tetratricopeptide repeat [PF13424.8, score=68.7]; Tetratricopeptide repeat [PF13181.8, score=34.9]; Tetratricopeptide repeat [PF13374.8, score=23.9]; Tetratricopeptide repeat [PF07719.19, score=23.2]; Tetratricopeptide repeat [PF14559.8, score=23.0]} {Smed: dd_Smed_v6_6239_0_1, dd_Smed_v6_6239_0_1, [Score=48.9, Expect=7e-06]} {RNA1509_11012} {RNA1310_2274} {RNA815_1508.1}
14. MligTC455_08551 88 1.82 Mlig455_024773

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_024773 {REF} {Length: 512}
15. MligTC455_32392 63 1.31 Mlig455_048146

Neo: -

Age: -

 SDCBP2 0.951 - - - - 0.951 - Mlig455_048146 {REF} {Length: 895} {Pfam: PDZ domain [PF00595.26, score=47.3]; PDZ domain [PF17820.3, score=35.5]; PDZ domain [PF13180.8, score=31.4]} {Human: ENSG00000125775, SDCBP2, syndecan binding protein 2, [Score=60.1, Expect=1e-10]} {Mouse: ENSMUSG00000027456, Sdcbp2, syndecan binding protein (syntenin) 2, [Score=61.2, Expect=3e-11]} {Dmel: FBgn0263289, scrib, scribbled, [Score=46.6, Expect=4e-06]} {Celegans: WBGene00016678, C45G9.7, [Score=44.3, Expect=4e-06]} {Smed: dd_Smed_v6_11951_0_1, dd_Smed_v6_11951_0_1, [Score=90.5, Expect=1e-21]} {RNA1310_28491} {RNA815_52955}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA