TomoSeq data search

Data search

Results for MligTC455_51638

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51638

17

0.35

Mlig455_025423

Neo: -

Age: -

Mlig455_025423 {REF} {Length: 528} {NoTransDecoderORF} {RNA1509_54282} {RNA1310_113899}

Cumulative graph for MligTC455_51638

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.436	0.696	0.99997	1.00000
RegionR2	2.843	0.696	0.99992	1.00000
RegionR3	0.384	0.696	0.99994	1.00000
RegionR4	-3.046	0.696	0.99980	1.00000
RegionR5	-0.953	0.696	0.99988	1.00000
RegionR6	-0.253	0.696	0.99992	1.00000
RegionR7	1.277	0.696	0.99997	1.00000
RegionR8	2.185	0.696	0.99998	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.99	0.696	0.99996	1.00000
RegenerationR2	1.549	0.696	1.00000	1.00000
RegenerationR3	2.105	0.696	0.99994	1.00000
RegenerationR4	2.371	0.696	1.00000	1.00000
RegenerationR5	1.023	0.696	0.99963	1.00000
RegenerationR6	1.041	0.696	0.99955	1.00000
RegenerationBL	-2.412	0.696	0.99992	1.00000
RegenerationTP	-1.795	0.696	0.99993	1.00000

Genes with expression patterns similar to MligTC455_51638

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51638	17	0.35	Mlig455_025423	Neo: - Age: -		1	-	-	-	-	1.000	-	Mlig455_025423 {REF} {Length: 528} {NoTransDecoderORF} {RNA1509_54282} {RNA1310_113899}
2.	MligTC455_12424	22	0.47	Mlig455_012135	Neo: - Age: -		0.984	-	-	-	-	0.984	-	Mlig455_012135 {REF} {Length: 1566} {TRANSSPLICED} {Pfam: BEN domain [PF10523.11, score=18.9]} {RNA1509_20962} {RNA1310_16852.1} {RNA815_8306.1}
3.	MligTC455_49417	47	0.97	Mlig455_018820	Neo: - Age: -		0.972	-	-	-	-	0.972	-	Mlig455_018820 {REF} {Length: 1221} {RNA1509_32397} {RNA1310_33051} {RNA815_37385}
4.	MligTC455_08795	29	0.6	Mlig455_005761	Neo: - Age: Down-Up-Down		0.966	-	-	-	-	0.966	-	Mlig455_005761 {REF} {Length: 855} {NoTransDecoderORF} {RNA1509_57252} {RNA1310_97275.1} {RNA815_50075}
5.	MligTC455_46613	57	1.18	Mlig455_057193	Neo: - Age: -	TNR	0.961	-	-	-	-	0.961	-	Mlig455_057193 {REF} {Length: 2096} {TRANSSPLICED} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=135.5]} {Human: ENSG00000116147, TNR, tenascin R, [Score=107, Expect=3e-25]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=102, Expect=1e-23]; ENSG00000085265, FCN1, ficolin 1, [Score=102, Expect=1e-24]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=108, Expect=4e-26]; ENSMUSG00000026725, Tnn, tenascin N, [Score=107, Expect=3e-25]} {Dmel: FBgn0003326, sca, scabrous, [Score=95.9, Expect=9e-22]} {Celegans: WBGene00017013, ensh-1, [Score=48.5, Expect=3e-06]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=89.0, Expect=1e-19]} {RNA1509_46373} {RNA1310_30846.1} {RNA815_24869}
6.	MligTC455_15176	21	0.43	Mlig455_021092	Neo: - Age: -		0.96	-	-	-	-	0.960	-	Mlig455_021092 {REF} {Length: 5532} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=118.2]; Endonuclease-reverse transcriptase [PF14529.8, score=76.5]} {RNA1509_7353} {RNA1310_1123.1} {RNA815_252.1}
7.	MligTC455_16150	267	5.56	Mlig455_057692	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.781	KLHDC8A	0.958	-	-	-	-	0.958	-	Mlig455_057692 {REF} {Length: 1684} {Pfam: Kelch motif [PF13964.8, score=56.8]; Kelch motif [PF01344.27, score=52.7]; Kelch motif [PF07646.17, score=36.4]; Galactose oxidase, central domain [PF13418.8, score=35.1]; Kelch motif [PF13854.8, score=27.6]} {Human: ENSG00000162873, KLHDC8A, kelch domain containing 8A, [Score=58.5, Expect=3e-09]} {Mouse: ENSMUSG00000042115, Klhdc8a, kelch domain containing 8A, [Score=63.5, Expect=1e-10]} {Smed: dd_Smed_v6_14507_0_1, dd_Smed_v6_14507_0_1, [RH, Score=209, Expect=3e-63]} {RNA1509_58319, RNA1509_58644} {RNA1310_20213, RNA1509_58319, RNA1509_58644} {RNA1509_58319, RNA1509_58644, RNA815_8052}
8.	MligTC455_42811	253	5.26	Mlig455_026720	Neo: - Age: Down-Up-Up		0.953	-	-	-	-	0.953	-	Mlig455_026720 {REF} {Length: 4037} {TRANSSPLICED} {Smed: dd_Smed_v6_11800_0_1, dd_Smed_v6_11800_0_1, [RH, Score=162, Expect=1e-40]} {RNA1509_15861} {RNA1310_17697.1, RNA1509_15861} {RNA1509_15861, RNA815_12504}
9.	MligTC455_18879	26	0.55	Mlig455_063345	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_063345 {REF} {Length: 769} {NoTransDecoderORF}
10.	MligTC455_23227	61	1.28	Mlig455_001505	Neo: - Age: -	EPHA7	0.952	-	-	-	-	0.952	-	Mlig455_001505 {REF} {Length: 4755} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=295.0]; Protein kinase domain [PF00069.27, score=136.9]; Ephrin receptor ligand binding domain [PF01404.21, score=117.2]; Fibronectin type III domain [PF00041.23, score=79.8]; Ephrin type-A receptor 2 transmembrane domain [PF14575.8, score=70.8]; SAM domain (Sterile alpha motif) [PF07647.19, score=58.4]; SAM domain (Sterile alpha motif) [PF00536.32, score=57.4]; Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=26.4]; ABC1 atypical kinase-like domain [PF03109.18, score=22.2]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=19.5]} {Human: ENSG00000135333, EPHA7, EPH receptor A7, [RH, Score=716, Expect=0.0]; ENSG00000145242, EPHA5, EPH receptor A5, [RH, Score=696, Expect=0.0]; ENSG00000116106, EPHA4, EPH receptor A4, [RH, Score=694, Expect=0.0]} {Mouse: ENSMUSG00000028289, Epha7, Eph receptor A7, [RH, Score=716, Expect=0.0]; ENSMUSG00000026235, Epha4, Eph receptor A4, [RH, Score=697, Expect=0.0]; ENSMUSG00000029245, Epha5, Eph receptor A5, [RH, Score=692, Expect=0.0]} {Dmel: FBgn0025936, Eph, Eph receptor tyrosine kinase, [RH, Score=676, Expect=0.0]} {Celegans: WBGene00006868, vab-1, Ephrin receptor 1, [RH, Score=485, Expect=6e-153]} {Smed: dd_Smed_v6_16928_0_1, dd_Smed_v6_16928_0_1, [RH, Score=579, Expect=0.0]} {RNA1509_51951} {RNA1310_5149.1} {RNA815_23934}
11.	MligTC455_38869	83	1.73	Mlig455_041415	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_041415 {REF} {Length: 1469} {Pfam: RNase H [PF00075.26, score=36.0]} {RNA1310_89877}

Berezikov Lab - 2020-2021 © ERIBA