TomoSeq data search

Data search

Results for MligTC455_15427

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_15427

112

2.32

Mlig455_036243

Neo: -

Age: -

Mlig455_036243 {REF} {Length: 1518} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=21.4]} {RNA1509_54681} {RNA1310_18763} {RNA815_17502}

Cumulative graph for MligTC455_15427

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.809	1.899	0.17682	0.80383
RegionR2	0.034	1.899	0.85257	1.00000
RegionR3	0.942	1.899	0.36977	0.90463
RegionR4	0.96	1.899	0.61143	0.92244
RegionR5	1.347	1.899	0.20102	0.49187
RegionR6	1.635	1.899	0.09653	0.57100
RegionR7	-0.113	1.899	0.89266	1.00000
RegionR8	1.005	1.899	0.52683	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.724	1.899	1.00000	1.00000
RegenerationR2	0.267	1.899	0.66766	0.94436
RegenerationR3	-0.12	1.899	0.85769	1.00000
RegenerationR4	0.138	1.899	0.76002	0.97277
RegenerationR5	-0.998	1.899	0.25137	0.68488
RegenerationR6	-1.079	1.899	0.18889	0.52630
RegenerationBL	0.451	1.899	0.66789	1.00000
RegenerationTP	0.749	1.899	0.54053	0.92617

Genes with expression patterns similar to MligTC455_15427

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_15427	112	2.32	Mlig455_036243	Neo: - Age: -		4	-	-	1.000	1.000	1.000	1.000	Mlig455_036243 {REF} {Length: 1518} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=21.4]} {RNA1509_54681} {RNA1310_18763} {RNA815_17502}
2.	MligTC455_47918	119	2.48	Mlig455_006053	Neo: - Age: Down-Down-Up	PODNL1	1.821	-	-	-	0.954	-	0.867	Mlig455_006053 {REF} {Length: 2760} {Pfam: Leucine rich repeat [PF13855.8, score=191.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=113.3]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=36.9]; Leucine Rich Repeat [PF00560.35, score=35.8]; Leucine Rich repeat [PF13516.8, score=34.6]; Leucine-rich repeat [PF14580.8, score=29.3]; Leucine rich repeat C-terminal domain [PF01463.26, score=21.8]} {Human: ENSG00000132000, PODNL1, podocan like 1, [Score=90.1, Expect=4e-18]; ENSG00000099769, IGFALS, insulin like growth factor binding protein acid labile subunit, [Score=87.8, Expect=3e-17]; ENSG00000205213, LGR4, leucine rich repeat containing G protein-coupled receptor 4, [Score=87.8, Expect=4e-17]; ENSG00000137507, LRRC32, leucine rich repeat containing 32, [Score=87.4, Expect=4e-17]} {Mouse: ENSMUSG00000063765, Chadl, chondroadherin-like, [Score=96.3, Expect=5e-20]; ENSMUSG00000052316, Lrrc15, leucine rich repeat containing 15, [Score=92.4, Expect=7e-19]; ENSMUSG00000046070, Igfals, insulin-like growth factor binding protein, acid labile subunit, [Score=92.0, Expect=8e-19]} {Dmel: FBgn0261269, conv, convoluted, [Score=109, Expect=4e-24]} {Celegans: WBGene00016974, lron-15, ELRR (Extracellular Leucine-Rich Repeat) ONly, [Score=92.0, Expect=9e-19]} {Smed: dd_Smed_v6_6669_0_1, dd_Smed_v6_6669_0_1, [Score=92.8, Expect=3e-19]} {RNA1509_47596} {RNA1310_6895, RNA1509_47596} {RNA1509_47596, RNA815_5082}
3.	MligTC455_17500	206	4.3	Mlig455_058448	Neo: - Age: logFC(26M/2M)=-0.551	ANKRD44	1.762	-	-	-	0.797	-	0.965	Mlig455_058448 {REF} {Length: 1455} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=88.8]; Ankyrin repeats (many copies) [PF13637.8, score=74.5]; Ankyrin repeat [PF00023.32, score=52.2]; Ankyrin repeats (many copies) [PF13857.8, score=51.5]; Ankyrin repeat [PF13606.8, score=47.2]} {Human: ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [Score=77.0, Expect=2e-14]} {Mouse: ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=73.9, Expect=1e-13]} {Smed: dd_Smed_v6_21003_0_1, dd_Smed_v6_21003_0_1, [Score=56.6, Expect=2e-08]} {RNA1509_51450} {RNA1310_16797, RNA1509_51450} {RNA1509_51450, RNA815_9033}
4.	MligTC455_53259	1211	25.23	Mlig455_000021, Mlig455_063726	Neo: - Age: Down-Up-Down Region-enriched R7: 2.967/0.00000 Regeneration-downregulated BL: -3.226 Regeneration-depleted BL: -3.226	CALM2	1.749	-	-	-	-	0.790	0.959	Mlig455_000021 {REF} {Length: 1568} {Pfam: EF hand [PF00036.34, score=104.3]; EF-hand domain pair [PF13499.8, score=101.0]; EF-hand domain [PF13405.8, score=85.6]; EF-hand domain pair [PF13833.8, score=69.9]; EF hand [PF13202.8, score=68.0]; EF-hand domain [PF14658.8, score=45.8]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=32.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=26.1]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=181, Expect=6e-58]; ENSG00000178363, CALML3, calmodulin like 3, [Score=177, Expect=6e-57]; ENSG00000160014, CALM3, calmodulin 3, [Score=176, Expect=1e-56]; ENSG00000198668, CALM1, calmodulin 1, [Score=176, Expect=1e-56]} {Mouse: ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=180, Expect=2e-58]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=178, Expect=6e-57]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=176, Expect=7e-57]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=176, Expect=7e-57]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=175, Expect=2e-56]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=174, Expect=3e-56]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=174, Expect=2e-56]} {RNA1509_7324} {RNA1310_27659.2, RNA1509_7324} {RNA1509_7324, RNA815_12079.1} Mlig455_063726 {REF} {Length: 1571} {Pfam: EF hand [PF00036.34, score=104.3]; EF-hand domain pair [PF13499.8, score=101.0]; EF-hand domain [PF13405.8, score=85.6]; EF-hand domain pair [PF13833.8, score=69.9]; EF hand [PF13202.8, score=68.0]; EF-hand domain [PF14658.8, score=45.8]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=32.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=26.1]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=181, Expect=6e-58]; ENSG00000178363, CALML3, calmodulin like 3, [Score=177, Expect=6e-57]; ENSG00000160014, CALM3, calmodulin 3, [Score=176, Expect=1e-56]; ENSG00000198668, CALM1, calmodulin 1, [Score=176, Expect=1e-56]} {Mouse: ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=180, Expect=2e-58]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=178, Expect=6e-57]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=176, Expect=7e-57]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=176, Expect=7e-57]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=175, Expect=2e-56]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=174, Expect=3e-56]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=174, Expect=2e-56]} {RNA1509_7324} {RNA1310_27659.2} {RNA815_12079.1}
5.	MligTC455_51096	52	1.08	Mlig455_032146	Neo: - Age: - Regeneration-upregulated R2: 4.714 Regeneration-enriched R2: 4.714		1.723	-	-	-	-	0.758	0.965	Mlig455_032146 {REF} {Length: 1803} {NoTransDecoderORF} {RNA1509_41176} {RNA1310_81558} {RNA815_47735}
6.	MligTC455_41152	318	6.63	Mlig455_056585, Mlig455_056606	Neo: - Age: - Region-enriched R2: 2.494/0.00456	PNKP	1.667	-	-	-	0.962	0.705	-	Mlig455_056585 {REF} {Length: 2076} {Pfam: Polynucleotide kinase 3 phosphatase [PF08645.13, score=162.2]; AAA domain [PF13671.8, score=44.2]} {Human: ENSG00000039650, PNKP, polynucleotide kinase 3'-phosphatase, [Score=233, Expect=3e-70]} {Mouse: ENSMUSG00000002963, Pnkp, polynucleotide kinase 3'- phosphatase, [Score=221, Expect=5e-66]} {Dmel: FBgn0037578, CG9601, [Score=210, Expect=6e-62]} {Celegans: WBGene00009010, F21D5.5, [Score=226, Expect=1e-69]} {Smed: dd_Smed_v6_1211_0_1, dd_Smed_v6_1211_0_1, [Score=200, Expect=5e-59]} {RNA1509_19728} {RNA1310_12254.1} {RNA815_7193.1} Mlig455_056606 {REF} {Length: 1918} {TRANSSPLICED} {Pfam: Polynucleotide kinase 3 phosphatase [PF08645.13, score=142.3]; AAA domain [PF13671.8, score=57.3]; Zeta toxin [PF06414.14, score=21.2]} {Human: ENSG00000039650, PNKP, polynucleotide kinase 3'-phosphatase, [Score=238, Expect=6e-73]} {Mouse: ENSMUSG00000002963, Pnkp, polynucleotide kinase 3'- phosphatase, [Score=223, Expect=2e-67]} {Dmel: FBgn0037578, CG9601, [Score=211, Expect=4e-63]} {Celegans: WBGene00009010, F21D5.5, [Score=228, Expect=1e-70]} {Smed: dd_Smed_v6_1211_0_2, dd_Smed_v6_1211_0_2, [Score=198, Expect=1e-58]} {RNA1509_46985} {RNA1310_14048} {RNA815_7193.1}
7.	MligTC455_40551	1174	24.45	Mlig455_067429	Neo: - Age: - Region-enriched R8: 1.619/0.01920 Region-enriched R2: 1.477/0.02353 Regeneration-downregulated BL: -2.164 Regeneration-depleted BL: -2.164		0.973	-	-	-	-	-	0.973	Mlig455_067429 {REF} {Length: 919} {RNA1509_20891} {RNA1310_40329} {RNA815_19163}
8.	MligTC455_32521	203	4.23	Mlig455_040932	Neo: - Age: Down-Down-Up Region-enriched R8: 3.877/0.00012 Region-enriched R2: 3.007/0.00212		0.969	-	-	-	-	-	0.969	Mlig455_040932 {REF} {Length: 1862} {RNA1310_21335.1} {RNA815_57481}
9.	MligTC455_24273	48	1.01	Mlig455_005193	Neo: - Age: -	AC254952.1	0.963	-	-	-	-	-	0.963	Mlig455_005193 {REF} {Length: 1491} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=92.7]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=64.9]} {Human: ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=124, Expect=2e-30]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=122, Expect=8e-30]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=122, Expect=8e-30]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=124, Expect=1e-30]; ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=123, Expect=2e-30]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=115, Expect=1e-27]} {Celegans: WBGene00017580, lgc-4, Ligand-gated ion channel 4, [Score=117, Expect=2e-28]} {Smed: dd_Smed_v6_8058_0_1, dd_Smed_v6_8058_0_1, [Score=114, Expect=2e-27]} {RNA1509_43533} {RNA1310_21349.2} {RNA815_39337}
10.	MligTC455_10277	34	0.72	Mlig455_036089	Neo: - Age: -		0.959	-	-	-	-	-	0.959	Mlig455_036089 {REF} {Length: 392} {NoTransDecoderORF} {RNA1509_14725} {RNA1310_79450} {RNA815_4200.3}
11.	MligTC455_46124	679	14.14	Mlig455_058018	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.461		0.959	-	-	-	0.959	-	-	Mlig455_058018 {REF} {Length: 2266} {Pfam: PLAC8 family [PF04749.19, score=68.6]} {Smed: dd_Smed_v6_477_0_1, dd_Smed_v6_477_0_1, [Score=121, Expect=4e-37]} {RNA1509_56540} {RNA1310_30391} {RNA815_19375}
12.	MligTC455_13099	93	1.93	Mlig455_057504	Neo: - Age: -		0.955	-	-	-	0.955	-	-	Mlig455_057504 {REF} {Length: 2002} {RNA1310_15168} {RNA815_31864}
13.	MligTC455_23908	319	6.64	Mlig455_035672, Mlig455_035768	Neo: - Age: - Region-enriched R8: 3.529/0.00166	SDCBP	0.955	-	-	-	-	-	0.955	Mlig455_035672 {REF} {Length: 2598} {Pfam: PDZ domain [PF00595.26, score=78.0]; PDZ domain [PF17820.3, score=57.4]; PDZ domain [PF13180.8, score=42.0]} {Human: ENSG00000137575, SDCBP, syndecan binding protein, [Score=57.0, Expect=2e-08]} {Mouse: ENSMUSG00000030838, Ush1c, USH1 protein network component harmonin, [Score=59.3, Expect=8e-09]; ENSMUSG00000028249, Sdcbp, syndecan binding protein, [Score=58.2, Expect=2e-09]} {Dmel: FBgn0029835, CG5921, [Score=67.4, Expect=2e-11]} {Smed: dd_Smed_v6_11951_0_1, dd_Smed_v6_11951_0_1, [RH, Score=188, Expect=2e-54]} {RNA1509_47757} {RNA1310_7845.1} {RNA815_33452} Mlig455_035768 {REF} {Length: 2416} {Pfam: PDZ domain [PF00595.26, score=75.7]; PDZ domain [PF17820.3, score=57.2]; PDZ domain [PF13180.8, score=43.7]} {Human: ENSG00000137575, SDCBP, syndecan binding protein, [Score=56.2, Expect=5e-08]} {Mouse: ENSMUSG00000030838, Ush1c, USH1 protein network component harmonin, [Score=62.0, Expect=1e-09]} {Dmel: FBgn0029835, CG5921, [Score=64.7, Expect=1e-10]} {Smed: dd_Smed_v6_11951_0_1, dd_Smed_v6_11951_0_1, [RH, Score=188, Expect=6e-54]} {RNA1509_47757} {RNA1310_7845.1} {RNA815_33452}
14.	MligTC455_21033	1129	23.52	Mlig455_010672	Neo: - Age: logFC(26M/2M)=0.356 Region-specific R2: 3.326 Region-enriched R2: 2.739/0.00000 Regeneration-downregulated R2: -1.967 Regeneration-depleted R2: -1.967		0.953	-	-	-	-	-	0.953	Mlig455_010672 {REF} {Length: 829} {RNA1509_30331, RNA1509_45731} {RNA1310_60944, RNA1509_30331, RNA1509_45731} {RNA1509_30331, RNA1509_45731, RNA815_27381.1}
15.	MligTC455_36547	91	1.9	Mlig455_063399	Neo: - Age: Up-Down-Down	PRKD3	0.953	-	-	0.953	-	-	-	Mlig455_063399 {REF} {Length: 3372} {Pfam: Protein kinase domain [PF00069.27, score=233.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=118.1]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=86.5]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=23.8]; C1 domain [PF03107.18, score=21.7]} {Human: ENSG00000115825, PRKD3, protein kinase D3, [RH, Score=714, Expect=0.0]; ENSG00000184304, PRKD1, protein kinase D1, [RH, Score=703, Expect=0.0]} {Mouse: ENSMUSG00000024070, Prkd3, protein kinase D3, [RH, Score=716, Expect=0.0]; ENSMUSG00000002688, Prkd1, protein kinase D1, [RH, Score=699, Expect=0.0]} {Dmel: FBgn0038603, PKD, Protein Kinase D, [RH, Score=637, Expect=0.0]} {Celegans: WBGene00012019, dkf-2, Serine/threonine-protein kinase dkf-2, [RH, Score=686, Expect=0.0]} {Smed: dd_Smed_v6_6620_0_1, dd_Smed_v6_6620_0_1, [Score=169, Expect=2e-45]} {RNA1509_31101} {RNA1310_7782} {RNA815_11060}
16.	MligTC455_17105	886	18.45	Mlig455_000588, Mlig455_030384	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.310	REEP2	0.952	-	-	-	-	-	0.952	Mlig455_000588 {REF} {Length: 1554} {TRANSSPLICED} {Pfam: TB2/DP1, HVA22 family [PF03134.21, score=93.3]} {Human: ENSG00000132563, REEP2, receptor accessory protein 2, [RH, Score=157, Expect=7e-47]} {Mouse: ENSMUSG00000038555, Reep2, receptor accessory protein 2, [RH, Score=154, Expect=3e-46]} {Dmel: FBgn0261564, Reep1, Receptor expression enhancing protein 1, [RH, Score=161, Expect=4e-46]} {Celegans: WBGene00020562, T19C3.4, [Score=132, Expect=4e-38]} {Smed: dd_Smed_v6_5799_0_2, dd_Smed_v6_5799_0_2, [RH, Score=184, Expect=6e-58]} {RNA1509_16926} {RNA1310_20837} {RNA815_8468.1} Mlig455_030384 {REF} {Length: 1551} {TRANSSPLICED} {Pfam: TB2/DP1, HVA22 family [PF03134.21, score=93.3]} {Human: ENSG00000132563, REEP2, receptor accessory protein 2, [RH, Score=157, Expect=7e-47]} {Mouse: ENSMUSG00000038555, Reep2, receptor accessory protein 2, [RH, Score=154, Expect=3e-46]} {Dmel: FBgn0261564, Reep1, Receptor expression enhancing protein 1, [RH, Score=161, Expect=4e-46]} {Celegans: WBGene00020562, T19C3.4, [Score=132, Expect=4e-38]} {Smed: dd_Smed_v6_5799_0_2, dd_Smed_v6_5799_0_2, [RH, Score=184, Expect=6e-58]} {RNA1509_16926, RNA1509_38680} {RNA1310_20837, RNA1509_16926, RNA1509_38680} {RNA1509_16926, RNA1509_38680, RNA815_8468.1}

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