TomoSeq data search

Data search

Results for MligTC455_15547

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_15547	1378	28.71	Mlig455_019210	Neo: - Age: -	VCL	Mlig455_019210 {REF} {Length: 5186} {Pfam: Vinculin family [PF01044.21, score=428.5]} {Human: ENSG00000035403, VCL, vinculin, [RH, Score=152, Expect=8e-37]} {Mouse: ENSMUSG00000021823, Vcl, vinculin, [RH, Score=147, Expect=2e-35]} {Dmel: FBgn0004397, Vinc, Vinculin, [RH, Score=197, Expect=1e-51]} {Celegans: WBGene00000942, deb-1, Vinculin, [RH, Score=189, Expect=5e-49]} {Smed: dd_Smed_v6_3542_0_1, dd_Smed_v6_3542_0_1, [RH, Score=177, Expect=3e-45]} {RNA1509_12163} {RNA1310_3254} {RNA815_7097}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_15547

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.013	5.072	0.98693	1.00000
RegionR2	-0.224	5.072	0.55521	0.91923
RegionR3	-0.145	5.072	0.64556	1.00000
RegionR4	0.303	5.072	0.44189	0.77045
RegionR5	0.68	5.072	0.01400	0.07421
RegionR6	0.17	5.072	0.58114	1.00000
RegionR7	-0.047	5.072	0.90570	1.00000
RegionR8	-0.724	5.072	0.16636	0.73794

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.548	5.072	0.62859	1.00000
RegenerationR2	-0.142	5.072	0.66749	0.94436
RegenerationR3	0.403	5.072	0.25954	0.69384
RegenerationR4	0.334	5.072	0.37187	0.79513
RegenerationR5	0.171	5.072	0.59881	0.90957
RegenerationR6	0.476	5.072	0.17595	0.50911
RegenerationBL	0.394	5.072	0.33998	0.70670
RegenerationTP	0.818	5.072	0.06049	0.39858

Genes with expression patterns similar to MligTC455_15547

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_15547	1378	28.71	Mlig455_019210	Neo: - Age: -	VCL	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_019210 {REF} {Length: 5186} {Pfam: Vinculin family [PF01044.21, score=428.5]} {Human: ENSG00000035403, VCL, vinculin, [RH, Score=152, Expect=8e-37]} {Mouse: ENSMUSG00000021823, Vcl, vinculin, [RH, Score=147, Expect=2e-35]} {Dmel: FBgn0004397, Vinc, Vinculin, [RH, Score=197, Expect=1e-51]} {Celegans: WBGene00000942, deb-1, Vinculin, [RH, Score=189, Expect=5e-49]} {Smed: dd_Smed_v6_3542_0_1, dd_Smed_v6_3542_0_1, [RH, Score=177, Expect=3e-45]} {RNA1509_12163} {RNA1310_3254} {RNA815_7097}
2.	MligTC455_16495	418	8.7	Mlig455_056081	Neo: Irradiation Age: -	HNRNPL	0.964	-	-	-	0.964	-	-	Mlig455_056081 {REF} {Length: 3143} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=104.6]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=89.8]; Occluded RNA-recognition motif [PF16842.7, score=31.7]; RRM-like domain [PF11835.10, score=21.8]} {Human: ENSG00000104824, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=174, Expect=3e-47]; ENSG00000282947, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=174, Expect=3e-47]} {Mouse: ENSMUSG00000015165, Hnrnpl, heterogeneous nuclear ribonucleoprotein L, [Score=174, Expect=3e-47]} {Dmel: FBgn0003435, sm, smooth, [Score=148, Expect=2e-38]} {Celegans: WBGene00016624, C44B7.2, [Score=100, Expect=3e-22]} {Smed: dd_Smed_v6_1327_0_1, dd_Smed_v6_1327_0_1, [Score=188, Expect=7e-53]} {RNA1509_11480, RNA1509_51231} {RNA1310_13979, RNA1509_11480, RNA1509_51231} {RNA1509_11480, RNA1509_51231, RNA815_16343}
3.	MligTC455_15988	831	17.31	Mlig455_050283, Mlig455_050290	Neo: - Age: -	ATP2C1	0.955	-	-	-	-	-	0.955	Mlig455_050283 {REF} {Length: 5637} {Pfam: Cation transporting ATPase, C-terminus [PF00689.23, score=148.0]; haloacid dehalogenase-like hydrolase [PF00702.28, score=79.1]; Cation transport ATPase (P-type) [PF13246.8, score=58.9]; E1-E2 ATPase [PF00122.22, score=28.0]} {Human: ENSG00000017260, ATP2C1, ATPase secretory pathway Ca2+ transporting 1, [Score=709, Expect=0.0]} {Mouse: ENSMUSG00000032570, Atp2c1, ATPase, Ca++-sequestering, [Score=712, Expect=0.0]} {Dmel: FBgn0052451, SPoCk, Secretory Pathway Calcium atpase, [Score=664, Expect=0.0]} {Celegans: WBGene00004063, pmr-1, Calcium-transporting ATPase, [Score=674, Expect=0.0]} {Smed: dd_Smed_v6_6310_0_1, dd_Smed_v6_6310_0_1, [Score=733, Expect=0.0]} {RNA1509_30074, RNA1509_7017} {RNA1310_3818.1, RNA1509_30074, RNA1509_7017} {RNA1509_30074, RNA1509_7017, RNA815_1139.1} Mlig455_050290 {REF} {Length: 5245} {TRANSSPLICED} {Pfam: E1-E2 ATPase [PF00122.22, score=161.5]; Cation transporting ATPase, C-terminus [PF00689.23, score=91.9]; haloacid dehalogenase-like hydrolase [PF00702.28, score=79.0]; Cation transporter/ATPase, N-terminus [PF00690.28, score=76.1]; Cation transport ATPase (P-type) [PF13246.8, score=57.3]} {Human: ENSG00000017260, ATP2C1, ATPase secretory pathway Ca2+ transporting 1, [Score=921, Expect=0.0]} {Mouse: ENSMUSG00000032570, Atp2c1, ATPase, Ca++-sequestering, [Score=909, Expect=0.0]} {Dmel: FBgn0052451, SPoCk, Secretory Pathway Calcium atpase, [Score=894, Expect=0.0]} {Celegans: WBGene00004063, pmr-1, Calcium-transporting ATPase, [Score=843, Expect=0.0]} {Smed: dd_Smed_v6_6310_0_1, dd_Smed_v6_6310_0_1, [Score=943, Expect=0.0]} {RNA1509_26176, RNA1509_26832} {RNA1310_3155.1, RNA1509_26832} {RNA1509_26832, RNA815_1139.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_15547

1378

28.71

Mlig455_019210

Neo: -

Age: -

VCL

1.000

MligTC455_16495

418

8.7

Mlig455_056081

Neo: Irradiation

Age: -

HNRNPL

0.964

Mlig455_056081 {REF} {Length: 3143} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=104.6]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=89.8]; Occluded RNA-recognition motif [PF16842.7, score=31.7]; RRM-like domain [PF11835.10, score=21.8]} {Human: ENSG00000104824, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=174, Expect=3e-47]; ENSG00000282947, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=174, Expect=3e-47]} {Mouse: ENSMUSG00000015165, Hnrnpl, heterogeneous nuclear ribonucleoprotein L, [Score=174, Expect=3e-47]} {Dmel: FBgn0003435, sm, smooth, [Score=148, Expect=2e-38]} {Celegans: WBGene00016624, C44B7.2, [Score=100, Expect=3e-22]} {Smed: dd_Smed_v6_1327_0_1, dd_Smed_v6_1327_0_1, [Score=188, Expect=7e-53]} {RNA1509_11480, RNA1509_51231} {RNA1310_13979, RNA1509_11480, RNA1509_51231} {RNA1509_11480, RNA1509_51231, RNA815_16343}

MligTC455_15988

831

17.31

Mlig455_050283, Mlig455_050290

Neo: -

Age: -

ATP2C1

0.955

Mlig455_050283 {REF} {Length: 5637} {Pfam: Cation transporting ATPase, C-terminus [PF00689.23, score=148.0]; haloacid dehalogenase-like hydrolase [PF00702.28, score=79.1]; Cation transport ATPase (P-type) [PF13246.8, score=58.9]; E1-E2 ATPase [PF00122.22, score=28.0]} {Human: ENSG00000017260, ATP2C1, ATPase secretory pathway Ca2+ transporting 1, [Score=709, Expect=0.0]} {Mouse: ENSMUSG00000032570, Atp2c1, ATPase, Ca++-sequestering, [Score=712, Expect=0.0]} {Dmel: FBgn0052451, SPoCk, Secretory Pathway Calcium atpase, [Score=664, Expect=0.0]} {Celegans: WBGene00004063, pmr-1, Calcium-transporting ATPase, [Score=674, Expect=0.0]} {Smed: dd_Smed_v6_6310_0_1, dd_Smed_v6_6310_0_1, [Score=733, Expect=0.0]} {RNA1509_30074, RNA1509_7017} {RNA1310_3818.1, RNA1509_30074, RNA1509_7017} {RNA1509_30074, RNA1509_7017, RNA815_1139.1}

Mlig455_050290 {REF} {Length: 5245} {TRANSSPLICED} {Pfam: E1-E2 ATPase [PF00122.22, score=161.5]; Cation transporting ATPase, C-terminus [PF00689.23, score=91.9]; haloacid dehalogenase-like hydrolase [PF00702.28, score=79.0]; Cation transporter/ATPase, N-terminus [PF00690.28, score=76.1]; Cation transport ATPase (P-type) [PF13246.8, score=57.3]} {Human: ENSG00000017260, ATP2C1, ATPase secretory pathway Ca2+ transporting 1, [Score=921, Expect=0.0]} {Mouse: ENSMUSG00000032570, Atp2c1, ATPase, Ca++-sequestering, [Score=909, Expect=0.0]} {Dmel: FBgn0052451, SPoCk, Secretory Pathway Calcium atpase, [Score=894, Expect=0.0]} {Celegans: WBGene00004063, pmr-1, Calcium-transporting ATPase, [Score=843, Expect=0.0]} {Smed: dd_Smed_v6_6310_0_1, dd_Smed_v6_6310_0_1, [Score=943, Expect=0.0]} {RNA1509_26176, RNA1509_26832} {RNA1310_3155.1, RNA1509_26832} {RNA1509_26832, RNA815_1139.1}