M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15988

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15988 831 17.31 Mlig455_050283, Mlig455_050290

Neo: -

Age: -

 ATP2C1

Mlig455_050283 {REF} {Length: 5637} {Pfam: Cation transporting ATPase, C-terminus [PF00689.23, score=148.0]; haloacid dehalogenase-like hydrolase [PF00702.28, score=79.1]; Cation transport ATPase (P-type) [PF13246.8, score=58.9]; E1-E2 ATPase [PF00122.22, score=28.0]} {Human: ENSG00000017260, ATP2C1, ATPase secretory pathway Ca2+ transporting 1, [Score=709, Expect=0.0]} {Mouse: ENSMUSG00000032570, Atp2c1, ATPase, Ca++-sequestering, [Score=712, Expect=0.0]} {Dmel: FBgn0052451, SPoCk, Secretory Pathway Calcium atpase, [Score=664, Expect=0.0]} {Celegans: WBGene00004063, pmr-1, Calcium-transporting ATPase, [Score=674, Expect=0.0]} {Smed: dd_Smed_v6_6310_0_1, dd_Smed_v6_6310_0_1, [Score=733, Expect=0.0]} {RNA1509_30074, RNA1509_7017} {RNA1310_3818.1, RNA1509_30074, RNA1509_7017} {RNA1509_30074, RNA1509_7017, RNA815_1139.1}

Mlig455_050290 {REF} {Length: 5245} {TRANSSPLICED} {Pfam: E1-E2 ATPase [PF00122.22, score=161.5]; Cation transporting ATPase, C-terminus [PF00689.23, score=91.9]; haloacid dehalogenase-like hydrolase [PF00702.28, score=79.0]; Cation transporter/ATPase, N-terminus [PF00690.28, score=76.1]; Cation transport ATPase (P-type) [PF13246.8, score=57.3]} {Human: ENSG00000017260, ATP2C1, ATPase secretory pathway Ca2+ transporting 1, [Score=921, Expect=0.0]} {Mouse: ENSMUSG00000032570, Atp2c1, ATPase, Ca++-sequestering, [Score=909, Expect=0.0]} {Dmel: FBgn0052451, SPoCk, Secretory Pathway Calcium atpase, [Score=894, Expect=0.0]} {Celegans: WBGene00004063, pmr-1, Calcium-transporting ATPase, [Score=843, Expect=0.0]} {Smed: dd_Smed_v6_6310_0_1, dd_Smed_v6_6310_0_1, [Score=943, Expect=0.0]} {RNA1509_26176, RNA1509_26832} {RNA1310_3155.1, RNA1509_26832} {RNA1509_26832, RNA815_1139.1}

Cumulative graph for MligTC455_15988

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.304 4.472 0.39186 1.00000
RegionR2 0.358 4.472 0.57793 0.93486
RegionR3 0.775 4.472 0.13270 0.62498
RegionR4 1.356 4.472 0.02740 0.12734
RegionR5 0.528 4.472 0.26854 0.59243
RegionR6 0.188 4.472 0.71964 1.00000
RegionR7 -0.882 4.472 0.17274 0.76345
RegionR8 -1.02 4.472 0.17800 0.75875

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.145 4.472 0.35549 1.00000
RegenerationR2 -0.328 4.472 0.55037 0.89366
RegenerationR3 -0.489 4.472 0.41336 0.81084
RegenerationR4 0.089 4.472 0.88444 1.00000
RegenerationR5 0.474 4.472 0.40389 0.80137
RegenerationR6 0.496 4.472 0.40864 0.74303
RegenerationBL 0.686 4.472 0.30098 0.66436
RegenerationTP 1.189 4.472 0.08656 0.46482


Genes with expression patterns similar to MligTC455_15988

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15988 831 17.31 Mlig455_050283, Mlig455_050290

Neo: -

Age: -

 ATP2C1 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_050283 {REF} {Length: 5637} {Pfam: Cation transporting ATPase, C-terminus [PF00689.23, score=148.0]; haloacid dehalogenase-like hydrolase [PF00702.28, score=79.1]; Cation transport ATPase (P-type) [PF13246.8, score=58.9]; E1-E2 ATPase [PF00122.22, score=28.0]} {Human: ENSG00000017260, ATP2C1, ATPase secretory pathway Ca2+ transporting 1, [Score=709, Expect=0.0]} {Mouse: ENSMUSG00000032570, Atp2c1, ATPase, Ca++-sequestering, [Score=712, Expect=0.0]} {Dmel: FBgn0052451, SPoCk, Secretory Pathway Calcium atpase, [Score=664, Expect=0.0]} {Celegans: WBGene00004063, pmr-1, Calcium-transporting ATPase, [Score=674, Expect=0.0]} {Smed: dd_Smed_v6_6310_0_1, dd_Smed_v6_6310_0_1, [Score=733, Expect=0.0]} {RNA1509_30074, RNA1509_7017} {RNA1310_3818.1, RNA1509_30074, RNA1509_7017} {RNA1509_30074, RNA1509_7017, RNA815_1139.1}

Mlig455_050290 {REF} {Length: 5245} {TRANSSPLICED} {Pfam: E1-E2 ATPase [PF00122.22, score=161.5]; Cation transporting ATPase, C-terminus [PF00689.23, score=91.9]; haloacid dehalogenase-like hydrolase [PF00702.28, score=79.0]; Cation transporter/ATPase, N-terminus [PF00690.28, score=76.1]; Cation transport ATPase (P-type) [PF13246.8, score=57.3]} {Human: ENSG00000017260, ATP2C1, ATPase secretory pathway Ca2+ transporting 1, [Score=921, Expect=0.0]} {Mouse: ENSMUSG00000032570, Atp2c1, ATPase, Ca++-sequestering, [Score=909, Expect=0.0]} {Dmel: FBgn0052451, SPoCk, Secretory Pathway Calcium atpase, [Score=894, Expect=0.0]} {Celegans: WBGene00004063, pmr-1, Calcium-transporting ATPase, [Score=843, Expect=0.0]} {Smed: dd_Smed_v6_6310_0_1, dd_Smed_v6_6310_0_1, [Score=943, Expect=0.0]} {RNA1509_26176, RNA1509_26832} {RNA1310_3155.1, RNA1509_26832} {RNA1509_26832, RNA815_1139.1}
2. MligTC455_24879 857 17.85 Mlig455_069172

Neo: Int S/G2/M

Age: -

 LIMS2 1.77 0.817 - - - - 0.953 Mlig455_069172 {REF} {Length: 2066} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=202.3]} {Human: ENSG00000072163, LIMS2, LIM zinc finger domain containing 2, [RH, Score=369, Expect=6e-126]; ENSG00000256977, LIMS3, LIM zinc finger domain containing 3, [RH, Score=368, Expect=4e-125]; ENSG00000256671, LIMS4, LIM zinc finger domain containing 4, [RH, Score=368, Expect=4e-125]; ENSG00000169756, LIMS1, LIM zinc finger domain containing 1, [RH, Score=365, Expect=2e-124]} {Mouse: ENSMUSG00000019920, Lims1, LIM and senescent cell antigen-like domains 1, [RH, Score=372, Expect=1e-126]; ENSMUSG00000024395, Lims2, LIM and senescent cell antigen like domains 2, [RH, Score=358, Expect=4e-122]} {Dmel: FBgn0020249, stck, steamer duck, [RH, Score=387, Expect=2e-133]} {Celegans: WBGene00006826, unc-97, LIM domain-containing protein unc-97, [RH, Score=377, Expect=1e-129]} {Smed: dd_Smed_v6_2476_0_1, dd_Smed_v6_2476_0_1, [RH, Score=427, Expect=2e-149]} {RNA1509_58964} {RNA1310_13680.2} {RNA815_4936.1}
3. MligTC455_38301 398 8.28 Mlig455_057142

Neo: -

Age: Down-Up-Down

 VPS26A 0.971 - - - - - 0.971 Mlig455_057142 {REF} {Length: 2712} {Pfam: Vacuolar protein sorting-associated protein 26 [PF03643.17, score=396.4]} {Human: ENSG00000122958, VPS26A, VPS26, retromer complex component A, [Score=411, Expect=1e-143]; ENSG00000151502, VPS26B, VPS26, retromer complex component B, [Score=401, Expect=3e-139]} {Mouse: ENSMUSG00000020078, Vps26a, VPS26 retromer complex component A, [Score=411, Expect=1e-143]; ENSMUSG00000031988, Vps26b, VPS26 retromer complex component B, [Score=401, Expect=1e-139]} {Dmel: FBgn0014411, Vps26, Vacuolar protein sorting 26, [Score=384, Expect=7e-131]} {Celegans: WBGene00006931, vps-26, Vacuolar protein sorting-associated protein 26, [Score=395, Expect=4e-137]} {Smed: dd_Smed_v6_3214_0_1, dd_Smed_v6_3214_0_1, [Score=395, Expect=6e-137]} {RNA1509_27843, RNA1509_36693} {RNA1310_12607, RNA1509_27843, RNA1509_36693} {RNA1509_27843, RNA1509_36693, RNA815_20231}
4. MligTC455_49811 323 6.73 Mlig455_035309

Neo: Int S/G2/M

Age: -

 ASCC2 0.969 - - - - - 0.969 Mlig455_035309 {REF} {Length: 4782} {Pfam: CUE domain [PF02845.18, score=31.9]} {Human: ENSG00000100325, ASCC2, activating signal cointegrator 1 complex subunit 2, [Score=224, Expect=2e-61]} {Mouse: ENSMUSG00000020412, Ascc2, activating signal cointegrator 1 complex subunit 2, [Score=189, Expect=9e-50]} {Dmel: FBgn0024973, CG2701, [Score=82.8, Expect=8e-16]} {RNA1509_34484, RNA1509_7044} {RNA1310_7597, RNA1509_34484} {RNA1509_34484, RNA815_1952.1}
5. MligTC455_48484 391 8.14 Mlig455_012644

Neo: Int S/G2/M

Age: -

 PRPSAP1 0.959 - - - - - 0.959 Mlig455_012644 {REF} {Length: 3155} {Pfam: Phosphoribosyl synthetase-associated domain [PF14572.8, score=267.5]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=145.3]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=47.6]; Phosphoribosyl transferase domain [PF00156.29, score=24.2]} {Human: ENSG00000161542, PRPSAP1, phosphoribosyl pyrophosphate synthetase associated protein 1, [Score=202, Expect=3e-60]; ENSG00000141127, PRPSAP2, phosphoribosyl pyrophosphate synthetase associated protein 2, [Score=201, Expect=3e-61]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=192, Expect=3e-55]} {Mouse: ENSMUSG00000015869, Prpsap1, phosphoribosyl pyrophosphate synthetase-associated protein 1, [Score=200, Expect=1e-59]; ENSMUSG00000020528, Prpsap2, phosphoribosyl pyrophosphate synthetase-associated protein 2, [Score=194, Expect=1e-57]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=191, Expect=5e-55]} {Dmel: FBgn0039790, CG2246, [Score=228, Expect=2e-70]} {Celegans: WBGene00012258, W04G3.5, [Score=213, Expect=2e-65]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=262, Expect=5e-82]} {RNA1509_48717} {RNA1310_16374.1} {RNA815_17008}
6. MligTC455_15547 1378 28.71 Mlig455_019210

Neo: -

Age: -

 VCL 0.955 - - - - - 0.955 Mlig455_019210 {REF} {Length: 5186} {Pfam: Vinculin family [PF01044.21, score=428.5]} {Human: ENSG00000035403, VCL, vinculin, [RH, Score=152, Expect=8e-37]} {Mouse: ENSMUSG00000021823, Vcl, vinculin, [RH, Score=147, Expect=2e-35]} {Dmel: FBgn0004397, Vinc, Vinculin, [RH, Score=197, Expect=1e-51]} {Celegans: WBGene00000942, deb-1, Vinculin, [RH, Score=189, Expect=5e-49]} {Smed: dd_Smed_v6_3542_0_1, dd_Smed_v6_3542_0_1, [RH, Score=177, Expect=3e-45]} {RNA1509_12163} {RNA1310_3254} {RNA815_7097}
7. MligTC455_35787 665 13.85 Mlig455_067247

Neo: -

Age: Up-Up-Down

 AASS 0.951 - - - - - 0.951 Mlig455_067247 {REF} {Length: 2195} {TRANSSPLICED} {Pfam: Alanine dehydrogenase/PNT, N-terminal domain [PF05222.17, score=69.8]} {Human: ENSG00000008311, AASS, aminoadipate-semialdehyde synthase, [Score=127, Expect=1e-31]} {Mouse: ENSMUSG00000029695, Aass, aminoadipate-semialdehyde synthase, [Score=134, Expect=2e-33]} {Dmel: FBgn0025687, LKRSDH, Lysine ketoglutarate reductase/saccharopine dehydrogenase, [Score=129, Expect=4e-32]} {Celegans: WBGene00019819, R02D3.1, [Score=126, Expect=4e-31]} {Smed: dd_Smed_v6_2894_0_1, dd_Smed_v6_2894_0_1, [Score=147, Expect=2e-38]} {RNA1509_36226} {RNA1310_22293} {RNA815_9197.1}
8. MligTC455_48483 415 8.64 Mlig455_012635

Neo: -

Age: -

 PRPSAP2 0.95 - - - - - 0.950 Mlig455_012635 {REF} {Length: 2472} {TRANSSPLICED} {Pfam: Phosphoribosyl synthetase-associated domain [PF14572.8, score=267.8]; N-terminal domain of ribose phosphate pyrophosphokinase [PF13793.8, score=122.2]; Phosphoribosyl transferase domain [PF00156.29, score=29.9]} {Human: ENSG00000141127, PRPSAP2, phosphoribosyl pyrophosphate synthetase associated protein 2, [Score=380, Expect=8e-131]; ENSG00000161542, PRPSAP1, phosphoribosyl pyrophosphate synthetase associated protein 1, [Score=363, Expect=1e-123]} {Mouse: ENSMUSG00000020528, Prpsap2, phosphoribosyl pyrophosphate synthetase-associated protein 2, [Score=378, Expect=7e-130]; ENSMUSG00000015869, Prpsap1, phosphoribosyl pyrophosphate synthetase-associated protein 1, [Score=362, Expect=3e-123]} {Dmel: FBgn0039790, CG2246, [RH, Score=430, Expect=2e-150]} {Celegans: WBGene00012258, W04G3.5, [RH, Score=408, Expect=3e-142]} {Smed: dd_Smed_v6_4658_0_1, dd_Smed_v6_4658_0_1, [RH, Score=468, Expect=1e-165]} {RNA1509_17844} {RNA1310_15004, RNA1509_17844} {RNA1509_17844, RNA815_9904}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA