M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15654

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15654 273 5.70 Mlig455_027011

Neo: -

Age: Down-Up-Down

 TTC23 Mlig455_027011 {REF} {Length: 2515} {Pfam: Tetratricopeptide repeat [PF13424.8, score=82.1]; Tetratricopeptide repeat [PF13374.8, score=53.9]; Tetratricopeptide repeat [PF00515.30, score=41.3]; Tetratricopeptide repeat [PF13181.8, score=23.9]; Tetratricopeptide repeat [PF13176.8, score=22.9]; Tetratricopeptide repeat [PF07719.19, score=20.5]; MalT-like TPR region [PF17874.3, score=18.5]} {Human: ENSG00000103852, TTC23, tetratricopeptide repeat domain 23, [RH, Score=148, Expect=1e-38]} {Mouse: ENSMUSG00000030555, Ttc23, tetratricopeptide repeat domain 23, [RH, Score=160, Expect=4e-43]} {Smed: dd_Smed_v6_15795_0_1, dd_Smed_v6_15795_0_1, [RH, Score=204, Expect=3e-60]} {RNA1509_43344} {RNA1310_7447.1} {RNA815_1983}

Cumulative graph for MligTC455_15654

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.034 3.043 0.48426 1.00000
RegionR2 1.258 3.043 0.01926 0.14953
RegionR3 0.456 3.043 0.27148 0.81606
RegionR4 -0.379 3.043 0.46469 0.79258
RegionR5 -0.913 3.043 0.04108 0.16261
RegionR6 0.187 3.043 0.67980 1.00000
RegionR7 -0.132 3.043 0.84609 1.00000
RegionR8 0.557 3.043 0.45445 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.902 3.043 0.38553 1.00000
RegenerationR2 0.205 3.043 0.56074 0.89882
RegenerationR3 -0.294 3.043 0.52081 0.86709
RegenerationR4 -0.356 3.043 0.46471 0.84997
RegenerationR5 -0.238 3.043 0.60591 0.91242
RegenerationR6 -0.822 3.043 0.12660 0.43765
RegenerationBL -0.406 3.043 0.58035 0.93253
RegenerationTP -0.373 3.043 0.61858 0.97159


Genes with expression patterns similar to MligTC455_15654

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15654 273 5.7 Mlig455_027011

Neo: -

Age: Down-Up-Down

 TTC23 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_027011 {REF} {Length: 2515} {Pfam: Tetratricopeptide repeat [PF13424.8, score=82.1]; Tetratricopeptide repeat [PF13374.8, score=53.9]; Tetratricopeptide repeat [PF00515.30, score=41.3]; Tetratricopeptide repeat [PF13181.8, score=23.9]; Tetratricopeptide repeat [PF13176.8, score=22.9]; Tetratricopeptide repeat [PF07719.19, score=20.5]; MalT-like TPR region [PF17874.3, score=18.5]} {Human: ENSG00000103852, TTC23, tetratricopeptide repeat domain 23, [RH, Score=148, Expect=1e-38]} {Mouse: ENSMUSG00000030555, Ttc23, tetratricopeptide repeat domain 23, [RH, Score=160, Expect=4e-43]} {Smed: dd_Smed_v6_15795_0_1, dd_Smed_v6_15795_0_1, [RH, Score=204, Expect=3e-60]} {RNA1509_43344} {RNA1310_7447.1} {RNA815_1983}
2. MligTC455_16150 267 5.56 Mlig455_057692

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.781

 KLHDC8A 2.506 - - 0.809 - 0.724 0.973 Mlig455_057692 {REF} {Length: 1684} {Pfam: Kelch motif [PF13964.8, score=56.8]; Kelch motif [PF01344.27, score=52.7]; Kelch motif [PF07646.17, score=36.4]; Galactose oxidase, central domain [PF13418.8, score=35.1]; Kelch motif [PF13854.8, score=27.6]} {Human: ENSG00000162873, KLHDC8A, kelch domain containing 8A, [Score=58.5, Expect=3e-09]} {Mouse: ENSMUSG00000042115, Klhdc8a, kelch domain containing 8A, [Score=63.5, Expect=1e-10]} {Smed: dd_Smed_v6_14507_0_1, dd_Smed_v6_14507_0_1, [RH, Score=209, Expect=3e-63]} {RNA1509_58319, RNA1509_58644} {RNA1310_20213, RNA1509_58319, RNA1509_58644} {RNA1509_58319, RNA1509_58644, RNA815_8052}
3. MligTC455_38708 306 6.36 Mlig455_040161

Neo: -

Age: Down-Up-Down

Region-enriched R2: 1.765/0.03108

 GCAT 1.81 - - - 0.974 - 0.836 Mlig455_040161 {REF} {Length: 2907} {TRANSSPLICED} {Pfam: Aminotransferase class I and II [PF00155.23, score=206.4]; Cys/Met metabolism PLP-dependent enzyme [PF01053.22, score=19.2]; Aminotransferase class-V [PF00266.21, score=18.2]} {Human: ENSG00000100116, GCAT, glycine C-acetyltransferase, [RH, Score=473, Expect=4e-166]} {Mouse: ENSMUSG00000006378, Gcat, glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase), [RH, Score=479, Expect=1e-168]} {Dmel: FBgn0036208, CG10361, [RH, Score=491, Expect=2e-173]} {Celegans: WBGene00012007, T25B9.1, [RH, Score=469, Expect=6e-165]} {Smed: dd_Smed_v6_2734_0_1, dd_Smed_v6_2734_0_1, [RH, Score=474, Expect=2e-166]} {RNA1509_20231, RNA1509_45760} {RNA1310_22904, RNA1509_20231, RNA1509_45760} {RNA1509_20231, RNA1509_45760, RNA815_10150}
4. MligTC455_09987 213 4.43 Mlig455_061259

Neo: -

Age: -

 1.799 - - - 0.964 - 0.835 Mlig455_061259 {REF} {Length: 878} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF14719.8, score=36.3]} {RNA1509_35099} {RNA1310_42966} {RNA815_24864}
5. MligTC455_44626 238 4.96 Mlig455_030645

Neo: -

Age: Up-Down-Down

 CFAP47 1.702 - - 0.751 - - 0.951 Mlig455_030645 {REF} {Length: 3012} {Pfam: Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin [PF15780.7, score=122.7]; Transmembrane protein 131-like N-terminal [PF12371.10, score=49.5]; Protein of unknown function (DUF1573) [PF07610.13, score=34.5]; MSP (Major sperm protein) domain [PF00635.28, score=34.0]; Flagellar-associated PapD-like [PF14874.8, score=20.6]; Calponin homology (CH) domain [PF00307.33, score=18.8]} {Human: ENSG00000165164, CFAP47, cilia and flagella associated protein 47, [RH, Score=1603, Expect=0.0]} {Mouse: ENSMUSG00000073077, Gm7173, predicted gene 7173, [RH, Score=1587, Expect=0.0]} {Smed: dd_Smed_v6_8294_0_2, dd_Smed_v6_8294_0_2, [RH, Score=1746, Expect=0.0]} {RNA1509_1109, RNA1509_38114} {RNA1310_98.1, RNA1509_38114} {RNA1509_38114, RNA815_42.1}
6. MligTC455_26183 2728 56.84 Mlig455_022641, Mlig455_022672, Mlig455_022687

Neo: -

Age: logFC(26M/2M)=-0.321

 TM9SF2 1.668 - - - 0.959 - 0.709

Mlig455_022641 {REF} {Length: 301} {Pfam: Endomembrane protein 70 [PF02990.18, score=48.3]} {Human: ENSG00000125304, TM9SF2, transmembrane 9 superfamily member 2, [Score=62.0, Expect=3e-12]} {Mouse: ENSMUSG00000025544, Tm9sf2, transmembrane 9 superfamily member 2, [Score=60.8, Expect=7e-12]} {Dmel: FBgn0032880, TM9SF2, Transmembrane 9 superfamily protein member 2, [Score=54.7, Expect=6e-10]} {Celegans: WBGene00006472, tag-123, Transmembrane 9 superfamily member, [Score=55.5, Expect=3e-10]} {Smed: dd_Smed_v6_2806_0_1, dd_Smed_v6_2806_0_1, [Score=42.0, Expect=1e-05]} {RNA1509_5142} {RNA1310_6047.1} {RNA815_1817}

Mlig455_022672 {REF} {Length: 3286} {Pfam: Endomembrane protein 70 [PF02990.18, score=678.2]} {Human: ENSG00000125304, TM9SF2, transmembrane 9 superfamily member 2, [RH, Score=894, Expect=0.0]} {Mouse: ENSMUSG00000025544, Tm9sf2, transmembrane 9 superfamily member 2, [Score=889, Expect=0.0]} {Dmel: FBgn0032880, TM9SF2, Transmembrane 9 superfamily protein member 2, [RH, Score=890, Expect=0.0]} {Celegans: WBGene00006472, tag-123, Transmembrane 9 superfamily member, [RH, Score=813, Expect=0.0]} {Smed: dd_Smed_v6_2806_0_1, dd_Smed_v6_2806_0_1, [Score=473, Expect=8e-160]} {RNA1509_28927, RNA1509_5142} {RNA1310_6047.1, RNA1509_28927} {RNA1509_28927, RNA815_1817}

Mlig455_022687 {REF} {Length: 2961} {Pfam: Endomembrane protein 70 [PF02990.18, score=364.5]} {Human: ENSG00000125304, TM9SF2, transmembrane 9 superfamily member 2, [Score=462, Expect=3e-160]} {Mouse: ENSMUSG00000025544, Tm9sf2, transmembrane 9 superfamily member 2, [Score=462, Expect=2e-160]} {Dmel: FBgn0032880, TM9SF2, Transmembrane 9 superfamily protein member 2, [Score=456, Expect=3e-158]} {Celegans: WBGene00006472, tag-123, Transmembrane 9 superfamily member, [Score=417, Expect=9e-143]} {Smed: dd_Smed_v6_2806_0_1, dd_Smed_v6_2806_0_1, [Score=307, Expect=1e-100]} {RNA1509_10629, RNA1509_5142} {RNA1310_6047.1, RNA1509_10629} {RNA1509_10629, RNA815_1817}
7. MligTC455_45182 1838 38.29 Mlig455_016689

Neo: -

Age: -

 GNAO1 0.965 - - - - 0.965 - Mlig455_016689 {REF} {Length: 2862} {TRANSSPLICED} {Pfam: G-protein alpha subunit [PF00503.22, score=408.8]; ADP-ribosylation factor family [PF00025.23, score=62.5]; Gtr1/RagA G protein conserved region [PF04670.14, score=24.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=20.3]} {Human: ENSG00000087258, GNAO1, G protein subunit alpha o1, [RH, Score=619, Expect=0.0]} {Mouse: ENSMUSG00000031748, Gnao1, guanine nucleotide binding protein, alpha O, [RH, Score=612, Expect=0.0]} {Dmel: FBgn0001122, Galphao, G protein alpha o subunit, [RH, Score=649, Expect=0.0]} {Celegans: WBGene00001648, goa-1, Guanine nucleotide-binding protein G(o) subunit alpha, [RH, Score=648, Expect=0.0]} {Smed: dd_Smed_v6_1656_0_3, dd_Smed_v6_1656_0_3, [RH, Score=671, Expect=0.0]} {RNA1509_44439, RNA1509_48026, RNA1509_9073} {RNA1310_26362, RNA1509_44439, RNA1509_48026, RNA1509_9073} {RNA1509_44439, RNA1509_48026, RNA1509_9073, RNA815_15072}
8. MligTC455_22125 178 3.71 Mlig455_028579, Mlig455_028597

Neo: -

Age: -

Region-enriched R2: 5.949/0.00261

 0.958 - - - - 0.958 -

Mlig455_028579 {REF} {Length: 993} {RNA1509_54214} {RNA1310_51652} {RNA815_36975}

Mlig455_028597 {REF} {Length: 962} {RNA1509_54214} {RNA1310_51652} {RNA815_36975}
9. MligTC455_41581 438 9.13 Mlig455_001354

Neo: -

Age: -

 RBPMS 0.954 - - - 0.954 - - Mlig455_001354 {REF} {Length: 2343} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=63.4]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=23.1]} {Human: ENSG00000157110, RBPMS, RNA binding protein, mRNA processing factor, [RH, Score=135, Expect=2e-38]; ENSG00000166831, RBPMS2, RNA binding protein, mRNA processing factor 2, [RH, Score=134, Expect=1e-37]} {Mouse: ENSMUSG00000032387, Rbpms2, RNA binding protein with multiple splicing 2, [RH, Score=138, Expect=2e-39]; ENSMUSG00000031586, Rbpms, RNA binding protein gene with multiple splicing, [RH, Score=133, Expect=1e-37]} {Dmel: FBgn0263995, cpo, couch potato, [RH, Score=203, Expect=1e-59]} {Celegans: WBGene00003172, mec-8, Mec-8 protein, [RH, Score=144, Expect=5e-41]} {Smed: dd_Smed_v6_4296_0_3, dd_Smed_v6_4296_0_3, [RH, Score=161, Expect=2e-47]} {RNA1509_12950} {RNA1310_3819.2} {RNA815_19117.1}
10. MligTC455_15700 381 7.93 Mlig455_029700

Neo: -

Age: -

 NEK9 0.953 - - - - - 0.953 Mlig455_029700 {REF} {Length: 3273} {Pfam: Protein kinase domain [PF00069.27, score=196.8]; Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=167.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=136.5]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=78.8]; Fungal protein kinase [PF17667.3, score=20.1]} {Human: ENSG00000119638, NEK9, NIMA related kinase 9, [RH, Score=743, Expect=0.0]} {Mouse: ENSMUSG00000034290, Nek9, NIMA (never in mitosis gene a)-related expressed kinase 9, [RH, Score=724, Expect=0.0]} {Dmel: FBgn0045980, niki, nimA-like kinase, [Score=308, Expect=2e-91]} {Celegans: WBGene00021461, nekl-1, NEK (NEver in mitosis Kinase) Like, [Score=355, Expect=3e-108]} {Smed: dd_Smed_v6_8692_0_1, dd_Smed_v6_8692_0_1, [RH, Score=576, Expect=0.0]} {RNA1509_4066} {RNA1310_4454, RNA1509_4066} {RNA1509_4066, RNA815_1625}
11. MligTC455_10666 1029 21.43 Mlig455_033815, Mlig455_036255

Neo: -

Age: Down-Up-Down

 0.952 - - - - 0.952 -

Mlig455_033815 {REF} {Length: 2235} {Pfam: CIDE-N domain [PF02017.17, score=45.6]} {RNA1509_6031} {RNA1310_3667} {RNA815_5199}

Mlig455_036255 {REF} {Length: 1884} {Pfam: CIDE-N domain [PF02017.17, score=46.3]} {RNA1509_6031} {RNA1310_3667} {RNA815_5199}
12. MligTC455_10667 475 9.89 Mlig455_060955

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_060955 {REF} {Length: 1952} {TRANSSPLICED} {Pfam: CIDE-N domain [PF02017.17, score=44.6]} {RNA1509_6031} {RNA1310_3667, RNA1509_6031} {RNA1509_6031, RNA815_5199}
13. MligTC455_08478 59 1.22 Mlig455_009785

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_009785 {REF} {Length: 348} {NoTransDecoderORF}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA