M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15801

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15801 66 1.37 Mlig455_069842

Neo: -

Age: -

 Mlig455_069842 {REF} {Length: 358} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_103074} {RNA815_52881}

Cumulative graph for MligTC455_15801

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.048 1.662 0.71460 1.00000
RegionR2 -1.798 1.662 0.99880 1.00000
RegionR3 -0.221 1.662 0.91887 1.00000
RegionR4 3.183 1.662 0.02764 0.12823
RegionR5 1.224 1.662 0.25282 0.57004
RegionR6 -0.137 1.662 0.91033 1.00000
RegionR7 0.201 1.662 0.82894 1.00000
RegionR8 -0.403 1.662 0.95539 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.654 1.662 1.00000 1.00000
RegenerationR2 -0.123 1.662 0.88107 1.00000
RegenerationR3 -0.125 1.662 0.87658 1.00000
RegenerationR4 -1.102 1.662 0.30155 0.74355
RegenerationR5 0.017 1.662 0.98798 1.00000
RegenerationR6 -1.344 1.662 0.27931 0.62845
RegenerationBL -3.962 1.662 0.14542 0.45507
RegenerationTP -1.418 1.662 0.37183 0.80938


Genes with expression patterns similar to MligTC455_15801

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15801 66 1.37 Mlig455_069842

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_069842 {REF} {Length: 358} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_103074} {RNA815_52881}
2. MligTC455_41591 78 1.62 Mlig455_013030

Neo: -

Age: Down-Up-Down

 ZDHHC2 1.774 - - - 0.796 0.978 - Mlig455_013030 {REF} {Length: 2382} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=97.6]; N-terminal domain of galactosyltransferase [PF02709.16, score=62.9]; N-terminal region of glycosyl transferase group 7 [PF13733.8, score=27.6]} {Human: ENSG00000104219, ZDHHC2, zinc finger DHHC-type containing 2, [Score=188, Expect=7e-55]; ENSG00000102383, ZDHHC15, zinc finger DHHC-type containing 15, [Score=180, Expect=2e-52]} {Mouse: ENSMUSG00000021969, Zdhhc20, zinc finger, DHHC domain containing 20, [Score=190, Expect=7e-56]; ENSMUSG00000039470, Zdhhc2, zinc finger, DHHC domain containing 2, [Score=188, Expect=4e-55]} {Dmel: FBgn0033474, CG1407, [Score=183, Expect=1e-53]} {Celegans: WBGene00014075, dhhc-4, Zinc finger DHHC domain-containing protein 4, [Score=153, Expect=3e-42]} {Smed: dd_Smed_v6_6233_0_1, dd_Smed_v6_6233_0_1, [Score=174, Expect=5e-51]} {RNA1509_23962} {RNA1310_14192} {RNA815_5095.1}
3. MligTC455_18225 657 13.69 Mlig455_034956

Neo: -

Age: logFC(26M/2M)=0.287

 1.71 - - - - 0.755 0.955 Mlig455_034956 {REF} {Length: 2635} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=45.3]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=40.0]} {Dmel: FBgn0037518, CG2641, [Score=52.4, Expect=4e-07]} {Celegans: WBGene00012464, arrd-7, ARRestin Domain protein, [Score=54.7, Expect=5e-08]} {RNA1509_22116} {RNA1310_8444.1, RNA1509_22116} {RNA1509_22116, RNA815_2910}
4. MligTC455_09643 8 0.17 Mlig455_041705

Neo: -

Age: -

 0.986 - - - - 0.986 - Mlig455_041705 {REF} {Length: 960} {Pfam: PAN domain [PF14295.8, score=18.9]} {RNA1509_48973} {RNA1310_27704} {RNA815_36286}
5. MligTC455_11316 16 0.32 Mlig455_015383

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_015383 {REF} {Length: 775} {TRANSSPLICED} {RNA1509_14043} {RNA1310_81640} {RNA815_13324.1}
6. MligTC455_35452 902 18.8 Mlig455_004136, Mlig455_060477, Mlig455_060506

Neo: -

Age: -

 ACBD5 0.969 - - - - - 0.969

Mlig455_004136 {REF} {Length: 3440} {TRANSSPLICED} {Pfam: Acyl CoA binding protein [PF00887.21, score=78.0]} {Human: ENSG00000107897, ACBD5, acyl-CoA binding domain containing 5, [Score=124, Expect=3e-32]} {Mouse: ENSMUSG00000026781, Acbd5, acyl-Coenzyme A binding domain containing 5, [Score=127, Expect=7e-32]} {Dmel: FBgn0031478, CG8814, [Score=81.3, Expect=1e-16]} {Celegans: WBGene00007680, maa-1, Membrane Associated Acyl-CoA binding protein, [Score=71.6, Expect=6e-14]} {Smed: dd_Smed_v6_5745_0_1, dd_Smed_v6_5745_0_1, [Score=114, Expect=3e-29]} {RNA1509_53464} {RNA1310_21517} {RNA815_18762}

Mlig455_060477 {REF} {Length: 3873} {Pfam: Acyl CoA binding protein [PF00887.21, score=78.2]} {Human: ENSG00000107897, ACBD5, acyl-CoA binding domain containing 5, [Score=125, Expect=1e-32]} {Mouse: ENSMUSG00000026781, Acbd5, acyl-Coenzyme A binding domain containing 5, [Score=125, Expect=4e-31]} {Dmel: FBgn0031478, CG8814, [Score=81.6, Expect=8e-17]} {Celegans: WBGene00007680, maa-1, Membrane Associated Acyl-CoA binding protein, [Score=72.0, Expect=6e-14]} {Smed: dd_Smed_v6_5745_0_1, dd_Smed_v6_5745_0_1, [Score=115, Expect=2e-29]} {RNA1509_53464} {RNA1310_21517} {RNA815_18762}

Mlig455_060506 {REF} {Length: 2561} {TRANSSPLICED} {Pfam: Acyl CoA binding protein [PF00887.21, score=78.2]} {Human: ENSG00000107897, ACBD5, acyl-CoA binding domain containing 5, [Score=124, Expect=2e-32]} {Mouse: ENSMUSG00000026781, Acbd5, acyl-Coenzyme A binding domain containing 5, [Score=127, Expect=6e-32]} {Dmel: FBgn0031478, CG8814, [Score=81.6, Expect=9e-17]} {Celegans: WBGene00007680, maa-1, Membrane Associated Acyl-CoA binding protein, [Score=72.0, Expect=5e-14]} {Smed: dd_Smed_v6_5745_0_1, dd_Smed_v6_5745_0_1, [Score=115, Expect=2e-29]} {RNA1509_53464} {RNA1310_21517, RNA1509_53464} {RNA1509_53464, RNA815_18762}
7. MligTC455_40856 25 0.52 Mlig455_053200

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=1.241

 PANK1 0.969 - - - - 0.969 - Mlig455_053200 {REF} {Length: 5528} {Pfam: Fumble [PF03630.16, score=93.6]} {Human: ENSG00000152782, PANK1, pantothenate kinase 1, [Score=53.9, Expect=2e-07]} {Mouse: ENSMUSG00000033610, Pank1, pantothenate kinase 1, [Score=55.1, Expect=5e-08]} {Celegans: WBGene00006862, pnk-4, PaNtothenate Kinase, [Score=55.8, Expect=2e-08]} {Smed: dd_Smed_v6_2075_0_1, dd_Smed_v6_2075_0_1, [Score=119, Expect=3e-30]} {RNA1509_43085} {RNA1310_22321.1, RNA1509_43085} {RNA1509_43085, RNA815_8776}
8. MligTC455_24654 134 2.8 Mlig455_033249

Neo: -

Age: -

 0.966 - - - 0.966 - - Mlig455_033249 {REF} {Length: 1015} {NoTransDecoderORF} {RNA1310_65661.1} {RNA815_41693}
9. MligTC455_15390 309 6.43 Mlig455_050937, Mlig455_067793

Neo: -

Age: Up-Down-Down

 SLC26A11 0.963 - - - - - 0.963

Mlig455_050937 {REF} {Length: 4807} {TRANSSPLICED} {Pfam: Sulfate permease family [PF00916.22, score=307.6]; STAS domain [PF01740.23, score=35.6]} {Human: ENSG00000181045, SLC26A11, solute carrier family 26 member 11, [RH, Score=404, Expect=2e-133]} {Mouse: ENSMUSG00000039908, Slc26a11, solute carrier family 26, member 11, [RH, Score=407, Expect=7e-135]} {Dmel: FBgn0013953, Esp, Epidermal stripes and patches, [RH, Score=336, Expect=5e-107]} {Celegans: WBGene00010789, sulp-5, SULfate Permease family, [Score=167, Expect=7e-44]} {Smed: dd_Smed_v6_7104_0_1, dd_Smed_v6_7104_0_1, [RH, Score=400, Expect=6e-133]} {RNA1509_16136, RNA1509_20873, RNA1509_51714, RNA1509_53918} {RNA1310_7632.2, RNA1509_16136, RNA1509_20873, RNA1509_51714, RNA1509_53918} {RNA1509_16136, RNA1509_20873, RNA1509_51714, RNA1509_53918, RNA815_4171}

Mlig455_067793 {REF} {Length: 1086} {TRANSSPLICED} {Pfam: Sulfate permease family [PF00916.22, score=140.8]} {Human: ENSG00000181045, SLC26A11, solute carrier family 26 member 11, [Score=167, Expect=2e-46]} {Mouse: ENSMUSG00000039908, Slc26a11, solute carrier family 26, member 11, [Score=165, Expect=6e-46]} {Dmel: FBgn0039736, CG7912, [Score=154, Expect=5e-42]} {Celegans: WBGene00013963, sulp-8, Anion transporter SULP-8a; Anion transporter SULP-8b; SULfate Permease family, [Score=108, Expect=6e-26]} {Smed: dd_Smed_v6_7104_0_1, dd_Smed_v6_7104_0_1, [Score=150, Expect=4e-41]} {RNA1509_16136} {RNA1310_12392} {RNA815_4171}
10. MligTC455_35909 812 16.92 Mlig455_034871

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.312

 TTLL10 0.955 - - - - 0.955 - Mlig455_034871 {REF} {Length: 3062} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=88.4]; YheC/D like ATP-grasp [PF14398.8, score=19.2]} {Human: ENSG00000162571, TTLL10, tubulin tyrosine ligase like 10, [Score=99.0, Expect=4e-21]} {Mouse: ENSMUSG00000029074, Ttll10, tubulin tyrosine ligase-like family, member 10, [Score=104, Expect=2e-23]} {Dmel: FBgn0052238, CG32238, [Score=69.3, Expect=3e-12]} {Celegans: WBGene00014232, ttll-4, Tubulin polyglutamylase ttll-4, [Score=52.4, Expect=6e-07]} {Smed: dd_Smed_v6_9664_0_1, dd_Smed_v6_9664_0_1, [Score=117, Expect=1e-27]} {RNA1509_19049, RNA1509_5087} {RNA1310_8962, RNA1509_19049, RNA1509_5087} {RNA1509_19049, RNA1509_5087, RNA815_5112}
11. MligTC455_20453 68 1.43 Mlig455_026036, Mlig455_043191

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_026036 {REF} {Length: 1944} {TRANSSPLICED} {RNA1310_38712} {RNA815_19806}

Mlig455_043191 {REF} {Length: 338} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_38712} {RNA815_19806}
12. MligTC455_25324 49 1.03 Mlig455_019454

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_019454 {REF} {Length: 993} {Pfam: Homeodomain-like domain [PF13384.8, score=25.2]; Helix-turn-helix domain [PF13518.8, score=20.0]; Winged helix-turn helix [PF13551.8, score=19.8]} {Smed: dd_Smed_v6_5882_0_1, dd_Smed_v6_5882_0_1, [Score=55.8, Expect=2e-10]} {RNA1509_35902} {RNA1310_52255} {RNA815_15951}
13. MligTC455_11013 203 4.22 Mlig455_010455

Neo: -

Age: -

Region-enriched R2: 3.244/0.03731

 0.953 - - - - - 0.953 Mlig455_010455 {REF} {Length: 1483} {RNA1310_22199.1} {RNA815_10412}
14. MligTC455_36304 67 1.41 Mlig455_061160

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.529

Regeneration-upregulated R2: 5.724

Regeneration-enriched R2: 5.724

 0.953 - - - - 0.953 - Mlig455_061160 {REF} {Length: 3684} {Pfam: Tenascin EGF domain [PF18720.3, score=25.7]; EGF-like domain [PF07974.15, score=21.9]} {RNA1509_3707} {RNA1310_2470} {RNA815_642.1}
15. MligTC455_37647 142 2.97 Mlig455_042606, Mlig455_042617

Neo: Int S/G2/M

Age: -

 DCAF1 0.951 - - - 0.951 - -

Mlig455_042606 {REF} {Length: 2506} {Pfam: LisH [PF08513.13, score=18.9]} {Human: ENSG00000145041, DCAF1, DDB1 and CUL4 associated factor 1, [Score=75.9, Expect=8e-14]} {Mouse: ENSMUSG00000040325, Dcaf1, DDB1 and CUL4 associated factor 1, [Score=76.3, Expect=5e-14]} {Celegans: WBGene00014243, dcaf-1, DDB1- and CUL4-associated factor homolog 1, [Score=53.1, Expect=4e-07]} {Smed: dd_Smed_v6_6487_0_2, dd_Smed_v6_6487_0_2, [Score=55.8, Expect=4e-08]} {RNA1509_31529} {RNA1310_5966} {RNA815_11029}

Mlig455_042617 {REF} {Length: 7960} {TRANSSPLICED} {Human: ENSG00000145041, DCAF1, DDB1 and CUL4 associated factor 1, [RH, Score=371, Expect=4e-105]} {Mouse: ENSMUSG00000040325, Dcaf1, DDB1 and CUL4 associated factor 1, [RH, Score=371, Expect=3e-105]} {Dmel: FBgn0034641, mahj, mahjong, [RH, Score=452, Expect=4e-133]} {Celegans: WBGene00014243, dcaf-1, DDB1- and CUL4-associated factor homolog 1, [RH, Score=316, Expect=2e-87]} {Smed: dd_Smed_v6_6487_0_2, dd_Smed_v6_6487_0_2, [RH, Score=171, Expect=8e-43]} {RNA1509_54617} {RNA1310_993.1, RNA1509_54617} {RNA1509_54617, RNA815_421.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA