M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40856

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40856 25 0.52 Mlig455_053200

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=1.241

 PANK1 Mlig455_053200 {REF} {Length: 5528} {Pfam: Fumble [PF03630.16, score=93.6]} {Human: ENSG00000152782, PANK1, pantothenate kinase 1, [Score=53.9, Expect=2e-07]} {Mouse: ENSMUSG00000033610, Pank1, pantothenate kinase 1, [Score=55.1, Expect=5e-08]} {Celegans: WBGene00006862, pnk-4, PaNtothenate Kinase, [Score=55.8, Expect=2e-08]} {Smed: dd_Smed_v6_2075_0_1, dd_Smed_v6_2075_0_1, [Score=119, Expect=3e-30]} {RNA1509_43085} {RNA1310_22321.1, RNA1509_43085} {RNA1509_43085, RNA815_8776}

Cumulative graph for MligTC455_40856

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.593 1.195 0.99970 1.00000
RegionR2 -0.686 1.195 0.87210 1.00000
RegionR3 2.593 1.195 0.05300 0.40354
RegionR4 2.897 1.195 0.10419 0.31602
RegionR5 1.635 1.195 0.19708 0.48537
RegionR6 -0.247 1.195 0.78236 1.00000
RegionR7 -2.718 1.195 1.00000 1.00000
RegionR8 -2.88 1.195 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.392 1.195 0.99997 1.00000
RegenerationR2 -0.919 1.195 0.41015 0.82048
RegenerationR3 0.296 1.195 0.79719 0.98184
RegenerationR4 0.903 1.195 0.63766 0.92618
RegenerationR5 -0.023 1.195 0.98679 1.00000
RegenerationR6 1.285 1.195 0.43590 0.76133
RegenerationBL 0.579 1.195 0.99963 1.00000
RegenerationTP 0.956 1.195 0.73002 1.00000


Genes with expression patterns similar to MligTC455_40856

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40856 25 0.52 Mlig455_053200

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=1.241

 PANK1 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_053200 {REF} {Length: 5528} {Pfam: Fumble [PF03630.16, score=93.6]} {Human: ENSG00000152782, PANK1, pantothenate kinase 1, [Score=53.9, Expect=2e-07]} {Mouse: ENSMUSG00000033610, Pank1, pantothenate kinase 1, [Score=55.1, Expect=5e-08]} {Celegans: WBGene00006862, pnk-4, PaNtothenate Kinase, [Score=55.8, Expect=2e-08]} {Smed: dd_Smed_v6_2075_0_1, dd_Smed_v6_2075_0_1, [Score=119, Expect=3e-30]} {RNA1509_43085} {RNA1310_22321.1, RNA1509_43085} {RNA1509_43085, RNA815_8776}
2. MligTC455_07569 28 0.59 Mlig455_066997

Neo: -

Age: -

 1.779 - - - - 0.964 0.815 Mlig455_066997 {REF} {Length: 819} {RNA1509_50562} {RNA1310_122277}
3. MligTC455_18343 24 0.51 Mlig455_009752, Mlig455_070106

Neo: -

Age: -

Region-enriched R4: 7.167/0.04292

 0.991 - - - - 0.991 -

Mlig455_009752 {REF} {Length: 389} {NoTransDecoderORF} {RNA1509_25325} {RNA1310_117642} {RNA815_17620.2}

Mlig455_070106 {REF} {Length: 478} {NoTransDecoderORF} {RNA1509_53541} {RNA1310_117642} {RNA815_17620.2}
4. MligTC455_02586 18 0.38 Mlig455_027317

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-1.626

 0.984 - - - - 0.984 - Mlig455_027317 {REF} {Length: 1429} {TRANSSPLICED} {RNA1509_15660} {RNA1310_28914} {RNA815_2791.1}
5. MligTC455_09643 8 0.17 Mlig455_041705

Neo: -

Age: -

 0.98 - - - - 0.980 - Mlig455_041705 {REF} {Length: 960} {Pfam: PAN domain [PF14295.8, score=18.9]} {RNA1509_48973} {RNA1310_27704} {RNA815_36286}
6. MligTC455_29364 29 0.61 Mlig455_066665

Neo: -

Age: -

Region-enriched R4: 5.130/0.00166

 0.98 - - - 0.980 - - Mlig455_066665 {REF} {Length: 798} {TRANSSPLICED} {Pfam: Vps16, N-terminal region [PF04841.15, score=76.9]} {Dmel: FBgn0285911, Vps16A, Vacuolar protein sorting 16A, [Score=75.1, Expect=3e-16]} {RNA1509_58148} {RNA1310_5715, RNA1509_58148} {RNA1509_58148, RNA815_29961}
7. MligTC455_57194 5 0.11 Mlig455_012870

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_012870 {REF} {Length: 521} {NoTransDecoderORF}
8. MligTC455_15801 66 1.37 Mlig455_069842

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_069842 {REF} {Length: 358} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_103074} {RNA815_52881}
9. MligTC455_20453 68 1.43 Mlig455_026036, Mlig455_043191

Neo: -

Age: -

 0.969 - - - - 0.969 -

Mlig455_026036 {REF} {Length: 1944} {TRANSSPLICED} {RNA1310_38712} {RNA815_19806}

Mlig455_043191 {REF} {Length: 338} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_38712} {RNA815_19806}
10. MligTC455_24663 144 3 Mlig455_003946

Neo: Irradiation

Age: -

 MSTO1 0.958 - - - 0.958 - - Mlig455_003946 {REF} {Length: 2430} {TRANSSPLICED} {Pfam: Misato Segment II tubulin-like domain [PF10644.11, score=75.0]; Tubulin domain [PF14881.8, score=35.8]} {Human: ENSG00000125459, MSTO1, misato 1, mitochondrial distribution and morphology regulator, [RH, Score=110, Expect=3e-25]} {Mouse: ENSMUSG00000068922, Msto1, misato 1, mitochondrial distribution and morphology regulator, [RH, Score=106, Expect=8e-24]} {Dmel: FBgn0020272, mst, misato, [RH, Score=122, Expect=3e-29]} {Smed: dd_Smed_v6_11439_0_1, dd_Smed_v6_11439_0_1, [RH, Score=107, Expect=2e-24]} {RNA1509_44476} {RNA1310_14007.2, RNA1509_44476} {RNA1509_44476, RNA815_5955.1}
11. MligTC455_41591 78 1.62 Mlig455_013030

Neo: -

Age: Down-Up-Down

 ZDHHC2 0.958 - - - - 0.958 - Mlig455_013030 {REF} {Length: 2382} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=97.6]; N-terminal domain of galactosyltransferase [PF02709.16, score=62.9]; N-terminal region of glycosyl transferase group 7 [PF13733.8, score=27.6]} {Human: ENSG00000104219, ZDHHC2, zinc finger DHHC-type containing 2, [Score=188, Expect=7e-55]; ENSG00000102383, ZDHHC15, zinc finger DHHC-type containing 15, [Score=180, Expect=2e-52]} {Mouse: ENSMUSG00000021969, Zdhhc20, zinc finger, DHHC domain containing 20, [Score=190, Expect=7e-56]; ENSMUSG00000039470, Zdhhc2, zinc finger, DHHC domain containing 2, [Score=188, Expect=4e-55]} {Dmel: FBgn0033474, CG1407, [Score=183, Expect=1e-53]} {Celegans: WBGene00014075, dhhc-4, Zinc finger DHHC domain-containing protein 4, [Score=153, Expect=3e-42]} {Smed: dd_Smed_v6_6233_0_1, dd_Smed_v6_6233_0_1, [Score=174, Expect=5e-51]} {RNA1509_23962} {RNA1310_14192} {RNA815_5095.1}
12. MligTC455_43026 40 0.83 Mlig455_043737

Neo: Int S/G2/M

Age: Up-Down-Down, logFC(26M/2M)=-0.373

 0.955 - - - - 0.955 - Mlig455_043737 {REF} {Length: 3032} {TRANSSPLICED} {RNA1509_38177} {RNA1310_2879.2} {RNA815_7299}
13. MligTC455_35909 812 16.92 Mlig455_034871

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.312

 TTLL10 0.951 - - - - 0.951 - Mlig455_034871 {REF} {Length: 3062} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=88.4]; YheC/D like ATP-grasp [PF14398.8, score=19.2]} {Human: ENSG00000162571, TTLL10, tubulin tyrosine ligase like 10, [Score=99.0, Expect=4e-21]} {Mouse: ENSMUSG00000029074, Ttll10, tubulin tyrosine ligase-like family, member 10, [Score=104, Expect=2e-23]} {Dmel: FBgn0052238, CG32238, [Score=69.3, Expect=3e-12]} {Celegans: WBGene00014232, ttll-4, Tubulin polyglutamylase ttll-4, [Score=52.4, Expect=6e-07]} {Smed: dd_Smed_v6_9664_0_1, dd_Smed_v6_9664_0_1, [Score=117, Expect=1e-27]} {RNA1509_19049, RNA1509_5087} {RNA1310_8962, RNA1509_19049, RNA1509_5087} {RNA1509_19049, RNA1509_5087, RNA815_5112}
14. MligTC455_38406 4 0.09 Mlig455_063475

Neo: -

Age: -

 ANKRD50 0.951 - - - - 0.951 - Mlig455_063475 {REF} {Length: 4390} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=47.3]; Ankyrin repeats (many copies) [PF13637.8, score=41.0]; Ankyrin repeat [PF13606.8, score=39.8]; Ankyrin repeat [PF00023.32, score=30.6]; Ankyrin repeats (many copies) [PF13857.8, score=28.6]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=60.1, Expect=2e-08]; ENSG00000107104, KANK1, KN motif and ankyrin repeat domains 1, [Score=58.2, Expect=4e-08]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=59.3, Expect=2e-08]; ENSMUSG00000032702, Kank1, KN motif and ankyrin repeat domains 1, [Score=59.3, Expect=3e-08]; ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=57.0, Expect=1e-07]} {Dmel: FBgn0031473, CG3104, [Score=50.8, Expect=4e-06]} {Smed: dd_Smed_v6_11252_0_1, dd_Smed_v6_11252_0_1, [Score=53.1, Expect=6e-07]} {RNA1509_58343} {RNA1310_18384} {RNA815_44377}
15. MligTC455_10375 17 0.35 Mlig455_066826

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_066826 {REF} {Length: 668} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59624} {RNA1310_65491} {RNA815_10554.1}
16. MligTC455_12038 6 0.12 Mlig455_036560, Mlig455_057786

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_036560 {REF} {Length: 1679}

Mlig455_057786 {REF} {Length: 1814}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA