M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_16024

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16024 145 3.02 Mlig455_000879

Neo: -

Age: logFC(26M/2M)=0.299

 IDE Mlig455_000879 {REF} {Length: 4663} {Pfam: Middle or third domain of peptidase_M16 [PF16187.7, score=280.9]; Insulinase (Peptidase family M16) [PF00675.22, score=142.4]; Peptidase M16 inactive domain [PF05193.23, score=89.0]} {Human: ENSG00000119912, IDE, insulin degrading enzyme, [RH, Score=719, Expect=0.0]} {Mouse: ENSMUSG00000056999, Ide, insulin degrading enzyme, [RH, Score=726, Expect=0.0]; ENSMUSG00000111624, Ide, insulin degrading enzyme, [RH, Score=726, Expect=0.0]} {Dmel: FBgn0001247, Ide, Insulin degrading metalloproteinase, [RH, Score=693, Expect=0.0]} {Celegans: WBGene00018426, F44E7.4, [RH, Score=582, Expect=0.0]} {Smed: dd_Smed_v6_9500_1_1, dd_Smed_v6_9500_1_1, [RH, Score=603, Expect=0.0]} {RNA1509_3150} {RNA1310_856.2} {RNA815_1063}

Cumulative graph for MligTC455_16024

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.182 2.385 0.93815 1.00000
RegionR2 -2.189 2.385 0.99936 1.00000
RegionR3 0.108 2.385 0.89179 1.00000
RegionR4 4.36 2.385 0.04762 0.18650
RegionR5 0.857 2.385 0.58316 0.94149
RegionR6 -1.101 2.385 0.99582 1.00000
RegionR7 -0.784 2.385 0.99249 1.00000
RegionR8 -2.432 2.385 0.99969 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.485 2.385 0.83627 1.00000
RegenerationR2 0.535 2.385 0.73040 0.96572
RegenerationR3 -2.106 2.385 0.22835 0.66337
RegenerationR4 -1.938 2.385 0.25737 0.70533
RegenerationR5 -0.592 2.385 0.65392 0.93359
RegenerationR6 1.786 2.385 0.31457 0.66203
RegenerationBL -0.65 2.385 0.80155 1.00000
RegenerationTP -0.587 2.385 0.72613 1.00000


Genes with expression patterns similar to MligTC455_16024

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_16024 145 3.02 Mlig455_000879

Neo: -

Age: logFC(26M/2M)=0.299

 IDE 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_000879 {REF} {Length: 4663} {Pfam: Middle or third domain of peptidase_M16 [PF16187.7, score=280.9]; Insulinase (Peptidase family M16) [PF00675.22, score=142.4]; Peptidase M16 inactive domain [PF05193.23, score=89.0]} {Human: ENSG00000119912, IDE, insulin degrading enzyme, [RH, Score=719, Expect=0.0]} {Mouse: ENSMUSG00000056999, Ide, insulin degrading enzyme, [RH, Score=726, Expect=0.0]; ENSMUSG00000111624, Ide, insulin degrading enzyme, [RH, Score=726, Expect=0.0]} {Dmel: FBgn0001247, Ide, Insulin degrading metalloproteinase, [RH, Score=693, Expect=0.0]} {Celegans: WBGene00018426, F44E7.4, [RH, Score=582, Expect=0.0]} {Smed: dd_Smed_v6_9500_1_1, dd_Smed_v6_9500_1_1, [RH, Score=603, Expect=0.0]} {RNA1509_3150} {RNA1310_856.2} {RNA815_1063}
2. MligTC455_05958 6 0.12 Mlig455_045904

Neo: -

Age: -

 0.997 - - - 0.997 - - Mlig455_045904 {REF} {Length: 260} {NoTransDecoderORF}
3. MligTC455_41207 52 1.08 Mlig455_011309, Mlig455_060938

Neo: -

Age: -

 0.995 - - - 0.995 - -

Mlig455_011309 {REF} {Length: 76} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_22660} {RNA1310_12928.1} {RNA815_18634}

Mlig455_060938 {REF} {Length: 68} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_22660} {RNA1310_12928.1} {RNA815_18634}
4. MligTC455_00555 15 0.31 Mlig455_012173

Neo: -

Age: -

 RPTN 0.983 - - - 0.983 - - Mlig455_012173 {REF} {Length: 962} {Pfam: Domain of unknown function (DUF4573) [PF15140.8, score=19.1]} {Human: ENSG00000215853, RPTN, repetin, [Score=49.3, Expect=2e-07]} {Mouse: ENSMUSG00000052415, Tchh, trichohyalin, [Score=52.8, Expect=1e-08]} {RNA1310_68353.1}
5. MligTC455_18594 22 0.46 Mlig455_036105

Neo: -

Age: -

 0.978 - - - 0.978 - - Mlig455_036105 {REF} {Length: 1679} {RNA1509_28683} {RNA1310_9078.1} {RNA815_3064.1}
6. MligTC455_47114 14 0.29 Mlig455_032836

Neo: -

Age: -

 0.978 - - - 0.978 - - Mlig455_032836 {REF} {Length: 265} {NoTransDecoderORF} {RNA1310_64101} {RNA815_38499}
7. MligTC455_00070 11 0.23 Mlig455_053401

Neo: -

Age: -

 0.977 - - - 0.977 - - Mlig455_053401 {REF} {Length: 541} {NoTransDecoderORF}
8. MligTC455_03372 14 0.29 Mlig455_068642

Neo: -

Age: -

 0.977 - - - 0.977 - - Mlig455_068642 {REF} {Length: 590} {NoTransDecoderORF} {RNA1509_6383} {RNA1310_56174} {RNA815_51778}
9. MligTC455_03998 1 0.03 Mlig455_002005, Mlig455_002098, Mlig455_002207

Neo: -

Age: -

 COL4A2 0.977 - - - 0.977 - -

Mlig455_002005 {REF} {Length: 671} {Pfam: Uncharacterized ACR, COG1993 [PF02641.17, score=23.5]} {Smed: dd_Smed_v6_64059_0_1, dd_Smed_v6_64059_0_1, [Score=45.1, Expect=6e-06]} {RNA1310_47066}

Mlig455_002098 {REF} {Length: 778} {Pfam: Uncharacterized ACR, COG1993 [PF02641.17, score=24.4]} {Human: ENSG00000134871, COL4A2, collagen type IV alpha 2 chain, [Score=48.9, Expect=2e-06]} {Smed: dd_Smed_v6_64059_0_1, dd_Smed_v6_64059_0_1, [Score=49.3, Expect=2e-07]} {RNA1310_47066}

Mlig455_002207 {REF} {Length: 654} {Pfam: Uncharacterized ACR, COG1993 [PF02641.17, score=22.6]} {RNA1310_47066}
10. MligTC455_06824 30 0.63 Mlig455_033684

Neo: -

Age: -

 0.977 - - - 0.977 - - Mlig455_033684 {REF} {Length: 521} {RNA1509_11770} {RNA1310_82896}
11. MligTC455_07057 32 0.66 Mlig455_062316, Mlig455_068910

Neo: -

Age: -

 0.977 - - - 0.977 - -

Mlig455_062316 {REF} {Length: 191} {NoTransDecoderORF}

Mlig455_068910 {REF} {Length: 226} {NoTransDecoderORF}
12. MligTC455_11441 4 0.08 Mlig455_039364

Neo: -

Age: -

 0.977 - - - 0.977 - - Mlig455_039364 {REF} {Length: 1132}
13. MligTC455_21684 5 0.11 Mlig455_014284, Mlig455_014320, Mlig455_014336

Neo: -

Age: logFC(26M/2M)=-0.541

 HECA 0.977 - - - 0.977 - -

Mlig455_014284 {REF} {Length: 1986} {Pfam: Headcase protein [PF16002.7, score=201.7]; Headcase protein family homologue [PF15353.8, score=31.7]} {Human: ENSG00000112406, HECA, hdc homolog, cell cycle regulator, [RH, Score=145, Expect=8e-38]} {Mouse: ENSMUSG00000039879, Heca, hdc homolog, cell cycle regulator, [RH, Score=142, Expect=4e-37]} {Dmel: FBgn0010113, hdc, Histidine decarboxylase, [RH, Score=151, Expect=2e-39]} {Celegans: WBGene00010614, cri-1, Conserved Regulator of Innate immunity, [Score=98.2, Expect=1e-22]} {Smed: dd_Smed_v6_6218_0_1, dd_Smed_v6_6218_0_1, [RH, Score=167, Expect=4e-46]} {RNA1509_12340} {RNA1310_16685} {RNA815_9766}

Mlig455_014320 {REF} {Length: 2086} {Pfam: Headcase protein [PF16002.7, score=201.7]; Headcase protein family homologue [PF15353.8, score=31.7]} {Human: ENSG00000112406, HECA, hdc homolog, cell cycle regulator, [RH, Score=145, Expect=8e-38]} {Mouse: ENSMUSG00000039879, Heca, hdc homolog, cell cycle regulator, [RH, Score=142, Expect=4e-37]} {Dmel: FBgn0010113, hdc, Histidine decarboxylase, [RH, Score=151, Expect=2e-39]} {Celegans: WBGene00010614, cri-1, Conserved Regulator of Innate immunity, [Score=98.2, Expect=1e-22]} {Smed: dd_Smed_v6_6218_0_1, dd_Smed_v6_6218_0_1, [RH, Score=167, Expect=4e-46]} {RNA1509_12340} {RNA1310_16685, RNA1509_12340} {RNA1509_12340, RNA815_9766}

Mlig455_014336 {REF} {Length: 2009} {Pfam: Headcase protein [PF16002.7, score=201.7]; Headcase protein family homologue [PF15353.8, score=31.7]} {Human: ENSG00000112406, HECA, hdc homolog, cell cycle regulator, [RH, Score=145, Expect=7e-38]} {Mouse: ENSMUSG00000039879, Heca, hdc homolog, cell cycle regulator, [RH, Score=142, Expect=4e-37]} {Dmel: FBgn0010113, hdc, Histidine decarboxylase, [RH, Score=151, Expect=2e-39]} {Celegans: WBGene00010614, cri-1, Conserved Regulator of Innate immunity, [Score=98.2, Expect=1e-22]} {Smed: dd_Smed_v6_6218_0_1, dd_Smed_v6_6218_0_1, [RH, Score=166, Expect=6e-46]} {RNA1509_12340} {RNA1310_16685} {RNA815_9766}
14. MligTC455_39786 16 0.33 Mlig455_049551

Neo: -

Age: -

 0.974 - - - 0.974 - - Mlig455_049551 {REF} {Length: 2496} {RNA1509_18723} {RNA1310_95138} {RNA815_42097}
15. MligTC455_49188 2341 48.77 Mlig455_002269, Mlig455_002314

Neo: -

Age: -

Region-enriched R6: 6.536/0.00415

 0.972 - - - 0.972 - -

Mlig455_002269 {REF} {Length: 959} {RNA1509_43329} {RNA1310_49486} {RNA815_5449}

Mlig455_002314 {REF} {Length: 1882} {RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1310_49486, RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1509_18874, RNA1509_2814, RNA1509_43329, RNA815_5449}
16. MligTC455_37870 8 0.18 Mlig455_013912, Mlig455_042223, Mlig455_042495

Neo: Int S/G2/M

Age: Down-Up-Down

 FCN2 0.968 - - - 0.968 - -

Mlig455_013912 {REF} {Length: 1493} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=39.7]} {Smed: dd_Smed_v6_129_2_2, dd_Smed_v6_129_2_2, [Score=136, Expect=3e-37]} {RNA1509_28547} {RNA1310_33803.1} {RNA815_30600}

Mlig455_042223 {REF} {Length: 2428} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=41.0]} {Smed: dd_Smed_v6_129_2_2, dd_Smed_v6_129_2_2, [RH, Score=250, Expect=9e-75]} {RNA1509_28547} {RNA1310_33803.1} {RNA815_30600}

Mlig455_042495 {REF} {Length: 1039} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=100.4]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=79.3, Expect=6e-17]; ENSG00000167772, ANGPTL4, angiopoietin like 4, [Score=79.3, Expect=1e-16]; ENSG00000085265, FCN1, ficolin 1, [Score=78.2, Expect=3e-16]; ENSG00000171564, FGB, fibrinogen beta chain, [Score=77.4, Expect=3e-16]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=76.6, Expect=2e-15]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=77.8, Expect=5e-16]; ENSMUSG00000033831, Fgb, fibrinogen beta chain, [Score=76.6, Expect=1e-15]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=75.1, Expect=2e-15]} {Dmel: FBgn0087011, CG41520, [Score=73.9, Expect=8e-15]} {RNA1509_28547} {RNA1310_111580} {RNA815_12221}
17. MligTC455_38911 37 0.76 Mlig455_052013

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.548

 ANK3 0.968 - - - 0.968 - - Mlig455_052013 {REF} {Length: 3708} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=144.6]; Ankyrin repeats (many copies) [PF13637.8, score=121.5]; Ankyrin repeat [PF00023.32, score=89.6]; Ankyrin repeat [PF13606.8, score=86.0]; Ankyrin repeats (many copies) [PF13857.8, score=79.5]; Mab-21 protein [PF03281.16, score=22.5]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=138, Expect=3e-32]; ENSG00000029534, ANK1, ankyrin 1, [Score=138, Expect=2e-32]; ENSG00000145362, ANK2, ankyrin 2, [Score=132, Expect=3e-30]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=135, Expect=2e-31]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=132, Expect=1e-30]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=127, Expect=5e-29]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=117, Expect=2e-26]} {Smed: dd_Smed_v6_10835_0_2, dd_Smed_v6_10835_0_2, [Score=129, Expect=3e-30]} {RNA1509_38691} {RNA1310_6227} {RNA815_19191}
18. MligTC455_49187 2581 53.77 Mlig455_002170

Neo: -

Age: -

Region-enriched R6: 6.621/0.00001

 0.962 - - - 0.962 - - Mlig455_002170 {REF} {Length: 748} {RNA1509_22237, RNA1509_6498} {RNA1310_49486, RNA1509_22237, RNA1509_6498} {RNA1509_22237, RNA1509_6498, RNA815_5449}
19. MligTC455_21916 25 0.52 Mlig455_054084

Neo: -

Age: -

 0.961 - - - 0.961 - - Mlig455_054084 {REF} {Length: 3233} {RNA1509_16616} {RNA1310_3827.1} {RNA815_1424.1}
20. MligTC455_09018 292 6.08 Mlig455_014490, Mlig455_014509, Mlig455_054440

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_014490 {REF} {Length: 2182} {RNA1509_36919} {RNA1310_69131} {RNA815_36781}

Mlig455_014509 {REF} {Length: 2307} {RNA1509_36919} {RNA1310_69131} {RNA815_36781}

Mlig455_054440 {REF} {Length: 2592} {NoTransDecoderORF} {RNA1509_36919} {RNA1310_69131} {RNA815_36781}
21. MligTC455_09938 37 0.78 Mlig455_063017

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_063017 {REF} {Length: 881} {NoTransDecoderORF}
22. MligTC455_25324 49 1.03 Mlig455_019454

Neo: -

Age: -

 0.957 - - - 0.957 - - Mlig455_019454 {REF} {Length: 993} {Pfam: Homeodomain-like domain [PF13384.8, score=25.2]; Helix-turn-helix domain [PF13518.8, score=20.0]; Winged helix-turn helix [PF13551.8, score=19.8]} {Smed: dd_Smed_v6_5882_0_1, dd_Smed_v6_5882_0_1, [Score=55.8, Expect=2e-10]} {RNA1509_35902} {RNA1310_52255} {RNA815_15951}
23. MligTC455_41750 29 0.6 Mlig455_062460

Neo: Int S/G2/M

Age: -

 SAMD4B 0.957 - - - 0.957 - - Mlig455_062460 {REF} {Length: 3236} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF00536.32, score=30.4]} {Human: ENSG00000179134, SAMD4B, sterile alpha motif domain containing 4B, [RH, Score=112, Expect=1e-25]} {Mouse: ENSMUSG00000109336, Samd4b, sterile alpha motif domain containing 4B, [Score=109, Expect=1e-24]} {Dmel: FBgn0016070, smg, smaug, [RH, Score=77.8, Expect=1e-14]} {Celegans: WBGene00022538, ZC190.4, [RH, Score=73.9, Expect=1e-13]} {Smed: dd_Smed_v6_6923_0_1, dd_Smed_v6_6923_0_1, [Score=129, Expect=1e-32]} {RNA1509_54805, RNA1509_58502} {RNA1310_14232, RNA1509_58502} {RNA1509_58502, RNA815_10563}
24. MligTC455_43241 66 1.38 Mlig455_029306

Neo: Germline

Age: logFC(26M/2M)=0.779

 DNLZ 0.957 - - - 0.957 - - Mlig455_029306 {REF} {Length: 1064} {TRANSSPLICED} {Pfam: DNL zinc finger [PF05180.14, score=93.8]; Mitochondrial ATP synthase epsilon chain [PF04627.15, score=71.5]} {Human: ENSG00000213221, DNLZ, DNL-type zinc finger, [RH, Score=94.0, Expect=1e-22]} {Mouse: ENSMUSG00000075467, Dnlz, DNL-type zinc finger, [RH, Score=98.2, Expect=2e-24]} {Dmel: FBgn0030676, CG12379, [RH, Score=96.3, Expect=8e-24]} {Celegans: WBGene00018723, F53A3.7, [RH, Score=85.5, Expect=2e-20]} {Smed: dd_Smed_v6_2816_0_1, dd_Smed_v6_2816_0_1, [RH, Score=73.9, Expect=3e-16]} {RNA1509_38478, RNA1509_54873} {RNA1310_45731.2, RNA1509_54873} {RNA1509_54873, RNA815_23691}
25. MligTC455_46941 90 1.86 Mlig455_050326

Neo: -

Age: -

 PDZRN4 0.957 - - - - 0.957 - Mlig455_050326 {REF} {Length: 2636} {Pfam: PDZ domain [PF17820.3, score=82.8]; PDZ domain [PF00595.26, score=70.7]; PDZ domain [PF13180.8, score=31.8]} {Human: ENSG00000165966, PDZRN4, PDZ domain containing ring finger 4, [RH, Score=96.3, Expect=5e-20]} {Mouse: ENSMUSG00000036218, Pdzrn4, PDZ domain containing RING finger 4, [Score=100, Expect=2e-21]} {Dmel: FBgn0024728, Slip1, [Score=71.6, Expect=1e-12]} {Celegans: WBGene00016846, C50F7.6, [Score=71.2, Expect=4e-13]} {Smed: dd_Smed_v6_4699_0_1, dd_Smed_v6_4699_0_1, [RH, Score=80.9, Expect=6e-16]} {RNA1310_10358} {RNA815_38642}
26. MligTC455_16121 35 0.72 Mlig455_015845

Neo: -

Age: -

 0.956 - - - 0.956 - - Mlig455_015845 {REF} {Length: 839} {RNA1509_6728} {RNA1310_56025} {RNA815_35015}
27. MligTC455_34432 199 4.15 Mlig455_038171

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_038171 {REF} {Length: 3551} {TRANSSPLICED} {Dmel: FBgn0033236, CG14764, [Score=112, Expect=3e-27]} {Smed: dd_Smed_v6_8359_0_1, dd_Smed_v6_8359_0_1, [Score=153, Expect=8e-43]} {RNA1509_24712} {RNA1310_19577.1, RNA1509_24712} {RNA1509_24712, RNA815_6336.1}
28. MligTC455_35469 92 1.91 Mlig455_051842

Neo: -

Age: -

 FPGS 0.953 - - - - 0.953 - Mlig455_051842 {REF} {Length: 3813} {TRANSSPLICED} {Pfam: Mur ligase family, glutamate ligase domain [PF02875.23, score=19.6]} {Human: ENSG00000136877, FPGS, folylpolyglutamate synthase, [RH, Score=321, Expect=1e-102]} {Mouse: ENSMUSG00000009566, Fpgs, folylpolyglutamyl synthetase, [RH, Score=310, Expect=6e-99]} {Dmel: FBgn0030407, CG2543, [RH, Score=247, Expect=5e-75]} {Celegans: WBGene00017777, F25B5.6, Putative folylpolyglutamate synthase, [RH, Score=273, Expect=2e-85]} {Smed: dd_Smed_v6_6956_0_1, dd_Smed_v6_6956_0_1, [RH, Score=279, Expect=4e-88]} {RNA1509_52653} {RNA1310_12883} {RNA815_5992.1}
29. MligTC455_22494 355 7.4 Mlig455_021564

Neo: -

Age: -

Region-enriched R5: 2.022/0.00412

 0.952 - - - - - 0.952 Mlig455_021564 {REF} {Length: 1307} {NoTransDecoderORF} {RNA1509_57748} {RNA1310_29874.1} {RNA815_10307}
30. MligTC455_50092 140 2.92 Mlig455_041942

Neo: Irradiation

Age: -

 RNF216 0.951 - - - 0.951 - - Mlig455_041942 {REF} {Length: 2906} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=26.8]} {Human: ENSG00000011275, RNF216, ring finger protein 216, [Score=176, Expect=1e-45]} {Mouse: ENSMUSG00000045078, Rnf216, ring finger protein 216, [Score=173, Expect=5e-45]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=61.6, Expect=1e-09]} {Celegans: WBGene00016157, C27A12.7, [Score=68.9, Expect=5e-12]} {Smed: dd_Smed_v6_4224_0_1, dd_Smed_v6_4224_0_1, [Score=63.9, Expect=1e-10]} {RNA1509_15865} {RNA1310_11127, RNA1509_15865} {RNA1509_15865, RNA815_4010.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA