M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_47114

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47114 14 0.29 Mlig455_032836

Neo: -

Age: -

 Mlig455_032836 {REF} {Length: 265} {NoTransDecoderORF} {RNA1310_64101} {RNA815_38499}

Cumulative graph for MligTC455_47114

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.234 0.619 0.99970 1.00000
RegionR2 -1.697 0.619 0.99975 1.00000
RegionR3 -0.267 0.619 0.99970 1.00000
RegionR4 1.077 0.619 0.99981 1.00000
RegionR5 0.073 0.619 0.99988 1.00000
RegionR6 -0.825 0.619 0.99993 1.00000
RegionR7 -0.333 0.619 1.00000 1.00000
RegionR8 0.738 0.619 0.99993 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.134 0.619 0.99991 1.00000
RegenerationR2 1.253 0.619 0.74840 0.97288
RegenerationR3 -0.097 0.619 0.51813 0.86553
RegenerationR4 -0.911 0.619 0.97226 1.00000
RegenerationR5 1.588 0.619 0.79336 0.98698
RegenerationR6 2.641 0.619 0.65888 0.90277
RegenerationBL 1.414 0.619 0.95872 1.00000
RegenerationTP -1.191 0.619 0.99989 1.00000


Genes with expression patterns similar to MligTC455_47114

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47114 14 0.29 Mlig455_032836

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_032836 {REF} {Length: 265} {NoTransDecoderORF} {RNA1310_64101} {RNA815_38499}
2. MligTC455_41750 29 0.6 Mlig455_062460

Neo: Int S/G2/M

Age: -

 SAMD4B 0.989 - - - 0.989 - - Mlig455_062460 {REF} {Length: 3236} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF00536.32, score=30.4]} {Human: ENSG00000179134, SAMD4B, sterile alpha motif domain containing 4B, [RH, Score=112, Expect=1e-25]} {Mouse: ENSMUSG00000109336, Samd4b, sterile alpha motif domain containing 4B, [Score=109, Expect=1e-24]} {Dmel: FBgn0016070, smg, smaug, [RH, Score=77.8, Expect=1e-14]} {Celegans: WBGene00022538, ZC190.4, [RH, Score=73.9, Expect=1e-13]} {Smed: dd_Smed_v6_6923_0_1, dd_Smed_v6_6923_0_1, [Score=129, Expect=1e-32]} {RNA1509_54805, RNA1509_58502} {RNA1310_14232, RNA1509_58502} {RNA1509_58502, RNA815_10563}
3. MligTC455_15178 6 0.13 Mlig455_027247

Neo: -

Age: -

 0.984 - - - 0.984 - - Mlig455_027247 {REF} {Length: 923} {NoTransDecoderORF} {RNA1310_42563}
4. MligTC455_09938 37 0.78 Mlig455_063017

Neo: -

Age: -

 0.979 - - - 0.979 - - Mlig455_063017 {REF} {Length: 881} {NoTransDecoderORF}
5. MligTC455_16024 145 3.02 Mlig455_000879

Neo: -

Age: logFC(26M/2M)=0.299

 IDE 0.978 - - - 0.978 - - Mlig455_000879 {REF} {Length: 4663} {Pfam: Middle or third domain of peptidase_M16 [PF16187.7, score=280.9]; Insulinase (Peptidase family M16) [PF00675.22, score=142.4]; Peptidase M16 inactive domain [PF05193.23, score=89.0]} {Human: ENSG00000119912, IDE, insulin degrading enzyme, [RH, Score=719, Expect=0.0]} {Mouse: ENSMUSG00000056999, Ide, insulin degrading enzyme, [RH, Score=726, Expect=0.0]; ENSMUSG00000111624, Ide, insulin degrading enzyme, [RH, Score=726, Expect=0.0]} {Dmel: FBgn0001247, Ide, Insulin degrading metalloproteinase, [RH, Score=693, Expect=0.0]} {Celegans: WBGene00018426, F44E7.4, [RH, Score=582, Expect=0.0]} {Smed: dd_Smed_v6_9500_1_1, dd_Smed_v6_9500_1_1, [RH, Score=603, Expect=0.0]} {RNA1509_3150} {RNA1310_856.2} {RNA815_1063}
6. MligTC455_10234 22 0.45 Mlig455_010257

Neo: -

Age: -

 0.976 - - - 0.976 - - Mlig455_010257 {REF} {Length: 385} {NoTransDecoderORF} {RNA1509_22999} {RNA1310_20268} {RNA815_55028}
7. MligTC455_30756 66 1.36 Mlig455_031771, Mlig455_054714

Neo: -

Age: logFC(26M/2M)=-0.696

 ANK1 0.976 - - - 0.976 - -

Mlig455_031771 {REF} {Length: 3793} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=184.4]; Ankyrin repeat [PF00023.32, score=135.6]; Ankyrin repeats (many copies) [PF13637.8, score=126.2]; Ankyrin repeat [PF13606.8, score=121.3]; Ankyrin repeats (many copies) [PF13857.8, score=105.1]; Mab-21 protein [PF03281.16, score=32.0]; Nucleoplasmin/nucleophosmin domain [PF03066.17, score=19.9]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=155, Expect=1e-37]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=159, Expect=2e-39]} {Dmel: FBgn0031473, CG3104, [Score=156, Expect=7e-42]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=150, Expect=1e-36]} {Smed: dd_Smed_v6_2072_0_20, dd_Smed_v6_2072_0_20, [Score=147, Expect=1e-35]} {RNA1509_26004} {RNA1310_3906.1} {RNA815_1664.1}

Mlig455_054714 {REF} {Length: 4487} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=443.9]; Ankyrin repeat [PF00023.32, score=286.8]; Ankyrin repeats (many copies) [PF13637.8, score=245.9]; Ankyrin repeats (many copies) [PF13857.8, score=223.5]; Ankyrin repeat [PF13606.8, score=222.5]; Glutamine amidotransferase domain [PF13537.8, score=32.6]; Mab-21 protein [PF03281.16, score=31.6]; PEGA domain [PF08308.13, score=26.0]; Nucleoplasmin/nucleophosmin domain [PF03066.17, score=23.6]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=265, Expect=7e-72]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=257, Expect=2e-69]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=248, Expect=3e-66]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=237, Expect=3e-67]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=258, Expect=4e-70]} {Smed: dd_Smed_v6_10835_0_2, dd_Smed_v6_10835_0_2, [Score=255, Expect=4e-69]} {RNA1509_26004} {RNA1310_3906.1} {RNA815_1664.1}
8. MligTC455_06504 14 0.28 Mlig455_034825

Neo: -

Age: -

 0.974 - - - 0.974 - - Mlig455_034825 {REF} {Length: 196} {NoTransDecoderORF}
9. MligTC455_00555 15 0.31 Mlig455_012173

Neo: -

Age: -

 RPTN 0.973 - - - 0.973 - - Mlig455_012173 {REF} {Length: 962} {Pfam: Domain of unknown function (DUF4573) [PF15140.8, score=19.1]} {Human: ENSG00000215853, RPTN, repetin, [Score=49.3, Expect=2e-07]} {Mouse: ENSMUSG00000052415, Tchh, trichohyalin, [Score=52.8, Expect=1e-08]} {RNA1310_68353.1}
10. MligTC455_10398 5 0.09 Mlig455_039953

Neo: -

Age: -

 0.971 - - - 0.971 - - Mlig455_039953 {REF} {Length: 1319} {NoTransDecoderORF} {RNA1509_48793} {RNA1310_45877} {RNA815_9578.1}
11. MligTC455_41207 52 1.08 Mlig455_011309, Mlig455_060938

Neo: -

Age: -

 0.971 - - - 0.971 - -

Mlig455_011309 {REF} {Length: 76} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_22660} {RNA1310_12928.1} {RNA815_18634}

Mlig455_060938 {REF} {Length: 68} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_22660} {RNA1310_12928.1} {RNA815_18634}
12. MligTC455_05958 6 0.12 Mlig455_045904

Neo: -

Age: -

 0.97 - - - 0.970 - - Mlig455_045904 {REF} {Length: 260} {NoTransDecoderORF}
13. MligTC455_00070 11 0.23 Mlig455_053401

Neo: -

Age: -

 0.968 - - - 0.968 - - Mlig455_053401 {REF} {Length: 541} {NoTransDecoderORF}
14. MligTC455_03372 14 0.29 Mlig455_068642

Neo: -

Age: -

 0.968 - - - 0.968 - - Mlig455_068642 {REF} {Length: 590} {NoTransDecoderORF} {RNA1509_6383} {RNA1310_56174} {RNA815_51778}
15. MligTC455_03998 1 0.03 Mlig455_002005, Mlig455_002098, Mlig455_002207

Neo: -

Age: -

 COL4A2 0.968 - - - 0.968 - -

Mlig455_002005 {REF} {Length: 671} {Pfam: Uncharacterized ACR, COG1993 [PF02641.17, score=23.5]} {Smed: dd_Smed_v6_64059_0_1, dd_Smed_v6_64059_0_1, [Score=45.1, Expect=6e-06]} {RNA1310_47066}

Mlig455_002098 {REF} {Length: 778} {Pfam: Uncharacterized ACR, COG1993 [PF02641.17, score=24.4]} {Human: ENSG00000134871, COL4A2, collagen type IV alpha 2 chain, [Score=48.9, Expect=2e-06]} {Smed: dd_Smed_v6_64059_0_1, dd_Smed_v6_64059_0_1, [Score=49.3, Expect=2e-07]} {RNA1310_47066}

Mlig455_002207 {REF} {Length: 654} {Pfam: Uncharacterized ACR, COG1993 [PF02641.17, score=22.6]} {RNA1310_47066}
16. MligTC455_06824 30 0.63 Mlig455_033684

Neo: -

Age: -

 0.968 - - - 0.968 - - Mlig455_033684 {REF} {Length: 521} {RNA1509_11770} {RNA1310_82896}
17. MligTC455_07057 32 0.66 Mlig455_062316, Mlig455_068910

Neo: -

Age: -

 0.968 - - - 0.968 - -

Mlig455_062316 {REF} {Length: 191} {NoTransDecoderORF}

Mlig455_068910 {REF} {Length: 226} {NoTransDecoderORF}
18. MligTC455_11441 4 0.08 Mlig455_039364

Neo: -

Age: -

 0.968 - - - 0.968 - - Mlig455_039364 {REF} {Length: 1132}
19. MligTC455_21684 5 0.11 Mlig455_014284, Mlig455_014320, Mlig455_014336

Neo: -

Age: logFC(26M/2M)=-0.541

 HECA 0.968 - - - 0.968 - -

Mlig455_014284 {REF} {Length: 1986} {Pfam: Headcase protein [PF16002.7, score=201.7]; Headcase protein family homologue [PF15353.8, score=31.7]} {Human: ENSG00000112406, HECA, hdc homolog, cell cycle regulator, [RH, Score=145, Expect=8e-38]} {Mouse: ENSMUSG00000039879, Heca, hdc homolog, cell cycle regulator, [RH, Score=142, Expect=4e-37]} {Dmel: FBgn0010113, hdc, Histidine decarboxylase, [RH, Score=151, Expect=2e-39]} {Celegans: WBGene00010614, cri-1, Conserved Regulator of Innate immunity, [Score=98.2, Expect=1e-22]} {Smed: dd_Smed_v6_6218_0_1, dd_Smed_v6_6218_0_1, [RH, Score=167, Expect=4e-46]} {RNA1509_12340} {RNA1310_16685} {RNA815_9766}

Mlig455_014320 {REF} {Length: 2086} {Pfam: Headcase protein [PF16002.7, score=201.7]; Headcase protein family homologue [PF15353.8, score=31.7]} {Human: ENSG00000112406, HECA, hdc homolog, cell cycle regulator, [RH, Score=145, Expect=8e-38]} {Mouse: ENSMUSG00000039879, Heca, hdc homolog, cell cycle regulator, [RH, Score=142, Expect=4e-37]} {Dmel: FBgn0010113, hdc, Histidine decarboxylase, [RH, Score=151, Expect=2e-39]} {Celegans: WBGene00010614, cri-1, Conserved Regulator of Innate immunity, [Score=98.2, Expect=1e-22]} {Smed: dd_Smed_v6_6218_0_1, dd_Smed_v6_6218_0_1, [RH, Score=167, Expect=4e-46]} {RNA1509_12340} {RNA1310_16685, RNA1509_12340} {RNA1509_12340, RNA815_9766}

Mlig455_014336 {REF} {Length: 2009} {Pfam: Headcase protein [PF16002.7, score=201.7]; Headcase protein family homologue [PF15353.8, score=31.7]} {Human: ENSG00000112406, HECA, hdc homolog, cell cycle regulator, [RH, Score=145, Expect=7e-38]} {Mouse: ENSMUSG00000039879, Heca, hdc homolog, cell cycle regulator, [RH, Score=142, Expect=4e-37]} {Dmel: FBgn0010113, hdc, Histidine decarboxylase, [RH, Score=151, Expect=2e-39]} {Celegans: WBGene00010614, cri-1, Conserved Regulator of Innate immunity, [Score=98.2, Expect=1e-22]} {Smed: dd_Smed_v6_6218_0_1, dd_Smed_v6_6218_0_1, [RH, Score=166, Expect=6e-46]} {RNA1509_12340} {RNA1310_16685} {RNA815_9766}
20. MligTC455_18594 22 0.46 Mlig455_036105

Neo: -

Age: -

 0.966 - - - 0.966 - - Mlig455_036105 {REF} {Length: 1679} {RNA1509_28683} {RNA1310_9078.1} {RNA815_3064.1}
21. MligTC455_02588 124 2.59 Mlig455_027269

Neo: -

Age: -

Region-enriched R8: 3.886/0.02772

 MX2 0.965 - - - - 0.965 - Mlig455_027269 {REF} {Length: 3110} {Pfam: Dynamin central region [PF01031.22, score=151.0]; Dynamin family [PF00350.25, score=125.4]; Dynamin GTPase effector domain [PF02212.20, score=54.8]; 50S ribosome-binding GTPase [PF01926.25, score=24.2]; AAA ATPase domain [PF13175.8, score=21.4]; Family with sequence similarity 184, A and B [PF15665.7, score=18.9]} {Human: ENSG00000183486, MX2, MX dynamin like GTPase 2, [RH, Score=347, Expect=1e-108]; ENSG00000157601, MX1, MX dynamin like GTPase 1, [RH, Score=334, Expect=1e-104]} {Mouse: ENSMUSG00000023341, Mx2, MX dynamin-like GTPase 2, [RH, Score=343, Expect=3e-108]} {Dmel: FBgn0003392, shi, shibire, [Score=153, Expect=2e-38]} {Celegans: WBGene00001130, dyn-1, Dynamin, [Score=164, Expect=4e-42]} {Smed: dd_Smed_v6_1818_0_1, dd_Smed_v6_1818_0_1, [Score=165, Expect=4e-43]} {RNA1509_19894} {RNA1310_7243} {RNA815_3194}
22. MligTC455_43241 66 1.38 Mlig455_029306

Neo: Germline

Age: logFC(26M/2M)=0.779

 DNLZ 0.965 - - - 0.965 - - Mlig455_029306 {REF} {Length: 1064} {TRANSSPLICED} {Pfam: DNL zinc finger [PF05180.14, score=93.8]; Mitochondrial ATP synthase epsilon chain [PF04627.15, score=71.5]} {Human: ENSG00000213221, DNLZ, DNL-type zinc finger, [RH, Score=94.0, Expect=1e-22]} {Mouse: ENSMUSG00000075467, Dnlz, DNL-type zinc finger, [RH, Score=98.2, Expect=2e-24]} {Dmel: FBgn0030676, CG12379, [RH, Score=96.3, Expect=8e-24]} {Celegans: WBGene00018723, F53A3.7, [RH, Score=85.5, Expect=2e-20]} {Smed: dd_Smed_v6_2816_0_1, dd_Smed_v6_2816_0_1, [RH, Score=73.9, Expect=3e-16]} {RNA1509_38478, RNA1509_54873} {RNA1310_45731.2, RNA1509_54873} {RNA1509_54873, RNA815_23691}
23. MligTC455_49188 2341 48.77 Mlig455_002269, Mlig455_002314

Neo: -

Age: -

Region-enriched R6: 6.536/0.00415

 0.965 - - - 0.965 - -

Mlig455_002269 {REF} {Length: 959} {RNA1509_43329} {RNA1310_49486} {RNA815_5449}

Mlig455_002314 {REF} {Length: 1882} {RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1310_49486, RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1509_18874, RNA1509_2814, RNA1509_43329, RNA815_5449}
24. MligTC455_49664 37 0.78 Mlig455_013619

Neo: -

Age: -

 CDH23 0.961 - - - 0.961 - - Mlig455_013619 {REF} {Length: 7298} {Pfam: Cadherin domain [PF00028.19, score=360.9]; Cadherin-like [PF08266.14, score=37.5]} {Human: ENSG00000107736, CDH23, cadherin related 23, [Score=372, Expect=1e-103]} {Mouse: ENSMUSG00000012819, Cdh23, cadherin 23 (otocadherin), [Score=374, Expect=2e-104]} {Dmel: FBgn0038247, Cad88C, Cadherin 88C, [Score=362, Expect=3e-101]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=224, Expect=2e-58]} {Smed: dd_Smed_v6_15356_0_1, dd_Smed_v6_15356_0_1, [Score=414, Expect=2e-118]} {RNA1509_16482} {RNA1310_682} {RNA815_249}
25. MligTC455_38911 37 0.76 Mlig455_052013

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.548

 ANK3 0.958 - - - 0.958 - - Mlig455_052013 {REF} {Length: 3708} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=144.6]; Ankyrin repeats (many copies) [PF13637.8, score=121.5]; Ankyrin repeat [PF00023.32, score=89.6]; Ankyrin repeat [PF13606.8, score=86.0]; Ankyrin repeats (many copies) [PF13857.8, score=79.5]; Mab-21 protein [PF03281.16, score=22.5]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=138, Expect=3e-32]; ENSG00000029534, ANK1, ankyrin 1, [Score=138, Expect=2e-32]; ENSG00000145362, ANK2, ankyrin 2, [Score=132, Expect=3e-30]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=135, Expect=2e-31]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=132, Expect=1e-30]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=127, Expect=5e-29]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=117, Expect=2e-26]} {Smed: dd_Smed_v6_10835_0_2, dd_Smed_v6_10835_0_2, [Score=129, Expect=3e-30]} {RNA1509_38691} {RNA1310_6227} {RNA815_19191}
26. MligTC455_37870 8 0.18 Mlig455_013912, Mlig455_042223, Mlig455_042495

Neo: Int S/G2/M

Age: Down-Up-Down

 FCN2 0.955 - - - 0.955 - -

Mlig455_013912 {REF} {Length: 1493} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=39.7]} {Smed: dd_Smed_v6_129_2_2, dd_Smed_v6_129_2_2, [Score=136, Expect=3e-37]} {RNA1509_28547} {RNA1310_33803.1} {RNA815_30600}

Mlig455_042223 {REF} {Length: 2428} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=41.0]} {Smed: dd_Smed_v6_129_2_2, dd_Smed_v6_129_2_2, [RH, Score=250, Expect=9e-75]} {RNA1509_28547} {RNA1310_33803.1} {RNA815_30600}

Mlig455_042495 {REF} {Length: 1039} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=100.4]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=79.3, Expect=6e-17]; ENSG00000167772, ANGPTL4, angiopoietin like 4, [Score=79.3, Expect=1e-16]; ENSG00000085265, FCN1, ficolin 1, [Score=78.2, Expect=3e-16]; ENSG00000171564, FGB, fibrinogen beta chain, [Score=77.4, Expect=3e-16]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=76.6, Expect=2e-15]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=77.8, Expect=5e-16]; ENSMUSG00000033831, Fgb, fibrinogen beta chain, [Score=76.6, Expect=1e-15]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=75.1, Expect=2e-15]} {Dmel: FBgn0087011, CG41520, [Score=73.9, Expect=8e-15]} {RNA1509_28547} {RNA1310_111580} {RNA815_12221}
27. MligTC455_50092 140 2.92 Mlig455_041942

Neo: Irradiation

Age: -

 RNF216 0.955 - - - 0.955 - - Mlig455_041942 {REF} {Length: 2906} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=26.8]} {Human: ENSG00000011275, RNF216, ring finger protein 216, [Score=176, Expect=1e-45]} {Mouse: ENSMUSG00000045078, Rnf216, ring finger protein 216, [Score=173, Expect=5e-45]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=61.6, Expect=1e-09]} {Celegans: WBGene00016157, C27A12.7, [Score=68.9, Expect=5e-12]} {Smed: dd_Smed_v6_4224_0_1, dd_Smed_v6_4224_0_1, [Score=63.9, Expect=1e-10]} {RNA1509_15865} {RNA1310_11127, RNA1509_15865} {RNA1509_15865, RNA815_4010.1}
28. MligTC455_49187 2581 53.77 Mlig455_002170

Neo: -

Age: -

Region-enriched R6: 6.621/0.00001

 0.95 - - - 0.950 - - Mlig455_002170 {REF} {Length: 748} {RNA1509_22237, RNA1509_6498} {RNA1310_49486, RNA1509_22237, RNA1509_6498} {RNA1509_22237, RNA1509_6498, RNA815_5449}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA