M. lignano Tomo-Seq
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Results for MligTC455_16147

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16147 1306 27.21 Mlig455_049284, Mlig455_049296, Mlig455_050629

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.378/0.00686

Mlig455_049284 {REF} {Length: 760} {TRANSSPLICED} {RNA1509_34488} {RNA1310_46478} {RNA815_23133}

Mlig455_049296 {REF} {Length: 762} {TRANSSPLICED} {RNA1509_34488} {RNA1310_46478} {RNA815_23133}

Mlig455_050629 {REF} {Length: 760} {TRANSSPLICED} {RNA1509_34488, RNA1509_53603} {RNA1310_46478, RNA1509_34488, RNA1509_53603} {RNA1509_34488, RNA1509_53603, RNA815_23133}

Cumulative graph for MligTC455_16147

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.523 5.009 0.12142 0.71520
RegionR2 0.684 5.009 0.21104 0.57528
RegionR3 -0.102 5.009 0.82760 1.00000
RegionR4 0.283 5.009 0.57817 0.89507
RegionR5 1.378 5.009 0.00061 0.00686
RegionR6 -0.399 5.009 0.39749 0.97022
RegionR7 0.186 5.009 0.69869 1.00000
RegionR8 -0.507 5.009 0.37188 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.328 5.009 0.05813 0.72355
RegenerationR2 -0.045 5.009 0.93020 1.00000
RegenerationR3 0.723 5.009 0.20395 0.63892
RegenerationR4 -0.263 5.009 0.65365 0.93496
RegenerationR5 -0.559 5.009 0.28907 0.71712
RegenerationR6 -0.229 5.009 0.69829 0.92353
RegenerationBL -0.171 5.009 0.76094 1.00000
RegenerationTP 0.773 5.009 0.15959 0.58740


Genes with expression patterns similar to MligTC455_16147

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_16147 1306 27.21 Mlig455_049284, Mlig455_049296, Mlig455_050629

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.378/0.00686

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_049284 {REF} {Length: 760} {TRANSSPLICED} {RNA1509_34488} {RNA1310_46478} {RNA815_23133}

Mlig455_049296 {REF} {Length: 762} {TRANSSPLICED} {RNA1509_34488} {RNA1310_46478} {RNA815_23133}

Mlig455_050629 {REF} {Length: 760} {TRANSSPLICED} {RNA1509_34488, RNA1509_53603} {RNA1310_46478, RNA1509_34488, RNA1509_53603} {RNA1509_34488, RNA1509_53603, RNA815_23133}
2. MligTC455_43209 379 7.89 Mlig455_016249

Neo: -

Age: Down-Up-Down

 TAF9 1.717 0.953 - - - - 0.764 Mlig455_016249 {REF} {Length: 2000} {TRANSSPLICED} {Pfam: Transcription initiation factor IID, 31kD subunit [PF02291.17, score=132.0]; CENP-S protein [PF15630.8, score=31.7]; Bromodomain associated [PF07524.15, score=23.9]; Centromere kinetochore component CENP-T histone fold [PF15511.8, score=23.6]} {Human: ENSG00000276463, TAF9, TATA-box binding protein associated factor 9, [RH, Score=135, Expect=6e-39]; ENSG00000273841, TAF9, TATA-box binding protein associated factor 9, [RH, Score=135, Expect=6e-39]; ENSG00000187325, TAF9B, TATA-box binding protein associated factor 9b, [RH, Score=134, Expect=2e-38]} {Mouse: ENSMUSG00000078941, Ak6, adenylate kinase 6, [RH, Score=135, Expect=4e-39]; ENSMUSG00000052293, Taf9, TATA-box binding protein associated factor 9, [RH, Score=135, Expect=4e-39]; ENSMUSG00000047242, Taf9b, TATA-box binding protein associated factor 9B, [RH, Score=132, Expect=4e-38]} {Dmel: FBgn0000617, e(y)1, enhancer of yellow 1, [RH, Score=128, Expect=4e-36]} {RNA1509_26456, RNA1509_41155} {RNA1310_14966.2, RNA1509_26456, RNA1509_41155} {RNA1509_26456, RNA1509_41155, RNA815_17644}
3. MligTC455_40788 442 9.2 Mlig455_048951

Neo: -

Age: -

 SUZ12 0.955 - - - - - 0.955 Mlig455_048951 {REF} {Length: 2627} {TRANSSPLICED} {Pfam: VEFS-Box of polycomb protein [PF09733.11, score=116.0]} {Human: ENSG00000178691, SUZ12, SUZ12, polycomb repressive complex 2 subunit, [RH, Score=250, Expect=2e-72]} {Mouse: ENSMUSG00000017548, Suz12, SUZ12 polycomb repressive complex 2 subunit, [RH, Score=253, Expect=1e-73]} {Dmel: FBgn0020887, Su(z)12, [RH, Score=187, Expect=1e-49]} {Smed: dd_Smed_v6_12930_0_1, dd_Smed_v6_12930_0_1, [RH, Score=193, Expect=3e-53]} {RNA1509_42645} {RNA1310_6938, RNA1509_42645} {RNA1509_42645, RNA815_5348}
4. MligTC455_32185 276 5.75 Mlig455_010153, Mlig455_010215

Neo: -

Age: -

Region-enriched R5: 1.367/0.00654

 PPP4C 0.952 - - - - - 0.952

Mlig455_010153 {REF} {Length: 1805} {TRANSSPLICED} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=139.3]; Serine-threonine protein phosphatase N-terminal domain [PF16891.7, score=19.1]} {Human: ENSG00000149923, PPP4C, protein phosphatase 4 catalytic subunit, [RH, Score=560, Expect=0.0]} {Mouse: ENSMUSG00000030697, Ppp4c, protein phosphatase 4, catalytic subunit, [RH, Score=560, Expect=0.0]} {Dmel: FBgn0023177, Pp4-19C, Protein phosphatase 19C, [RH, Score=538, Expect=0.0]} {Celegans: WBGene00004085, pph-4.1, Serine/threonine-protein phosphatase 4 catalytic subunit 1, [RH, Score=516, Expect=0.0]} {Smed: dd_Smed_v6_1324_0_1, dd_Smed_v6_1324_0_1, [RH, Score=526, Expect=0.0]} {RNA1509_13164, RNA1509_25488} {RNA1310_10920, RNA1509_13164, RNA1509_25488} {RNA1509_13164, RNA1509_25488, RNA815_2704.1}

Mlig455_010215 {REF} {Length: 2109} {TRANSSPLICED} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=138.3]; Serine-threonine protein phosphatase N-terminal domain [PF16891.7, score=19.1]} {Human: ENSG00000149923, PPP4C, protein phosphatase 4 catalytic subunit, [RH, Score=558, Expect=0.0]} {Mouse: ENSMUSG00000030697, Ppp4c, protein phosphatase 4, catalytic subunit, [RH, Score=558, Expect=0.0]} {Dmel: FBgn0023177, Pp4-19C, Protein phosphatase 19C, [RH, Score=536, Expect=0.0]} {Celegans: WBGene00004085, pph-4.1, Serine/threonine-protein phosphatase 4 catalytic subunit 1, [RH, Score=514, Expect=0.0]} {Smed: dd_Smed_v6_1324_0_1, dd_Smed_v6_1324_0_1, [RH, Score=525, Expect=0.0]} {RNA1509_13164} {RNA1310_10920} {RNA815_2704.1}
5. MligTC455_08317 392 8.17 Mlig455_028420, Mlig455_028441

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.296

 0.951 - - - - - 0.951

Mlig455_028420 {REF} {Length: 7899} {TRANSSPLICED} {Pfam: Nucleoside 2-deoxyribosyltransferase like [PF15891.7, score=119.7]} {Dmel: FBgn0003209, raw, [RH, Score=133, Expect=4e-32]} {Celegans: WBGene00007260, olrn-1, [RH, Score=87.8, Expect=5e-18]} {Smed: dd_Smed_v6_6200_0_1, dd_Smed_v6_6200_0_1, [RH, Score=201, Expect=4e-56]} {RNA1509_25351} {RNA1310_13410, RNA1509_25351} {RNA1509_25351, RNA815_29893}

Mlig455_028441 {REF} {Length: 7529} {TRANSSPLICED} {Pfam: Nucleoside 2-deoxyribosyltransferase like [PF15891.7, score=119.7]} {Dmel: FBgn0003209, raw, [RH, Score=136, Expect=2e-33]} {Celegans: WBGene00007260, olrn-1, [RH, Score=87.8, Expect=5e-18]} {Smed: dd_Smed_v6_6200_0_1, dd_Smed_v6_6200_0_1, [RH, Score=200, Expect=8e-56]} {RNA1509_25351} {RNA1310_13410} {RNA815_29893}

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