M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_16267

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16267 2598 54.13 Mlig455_008544

Neo: -

Age: -

 SUGT1 Mlig455_008544 {REF} {Length: 1065} {TRANSSPLICED} {Pfam: SGS domain [PF05002.17, score=111.3]; CS domain [PF04969.18, score=24.9]} {Human: ENSG00000165416, SUGT1, SGT1 homolog, MIS12 kinetochore complex assembly cochaperone, [RH, Score=125, Expect=4e-34]} {Mouse: ENSMUSG00000022024, Sugt1, SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae), [RH, Score=130, Expect=8e-36]} {Dmel: FBgn0265101, Sgt1, suppressor-of-G2-allele-of-skp1, [RH, Score=117, Expect=7e-33]} {Celegans: WBGene00008371, D1054.3, [RH, Score=120, Expect=5e-34]} {Smed: dd_Smed_v6_3826_0_1, dd_Smed_v6_3826_0_1, [RH, Score=115, Expect=2e-32]} {RNA1509_14874, RNA1509_3985, RNA1509_56406} {RNA1310_20250, RNA1509_14874, RNA1509_3985, RNA1509_56406} {RNA1509_14874, RNA1509_3985, RNA1509_56406, RNA815_14921}

Cumulative graph for MligTC455_16267

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.66 5.922 0.00017 0.04311
RegionR2 0.229 5.922 0.50092 0.88044
RegionR3 0.356 5.922 0.22516 0.76700
RegionR4 0.723 5.922 0.02502 0.11936
RegionR5 0.772 5.922 0.00393 0.02897
RegionR6 0.728 5.922 0.00995 0.16782
RegionR7 0.623 5.922 0.05685 0.45875
RegionR8 0.227 5.922 0.56551 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.017 5.922 0.55102 1.00000
RegenerationR2 0.197 5.922 0.45524 0.85003
RegenerationR3 0.398 5.922 0.16484 0.59887
RegenerationR4 0.387 5.922 0.18771 0.63087
RegenerationR5 0.253 5.922 0.35223 0.76573
RegenerationR6 0.358 5.922 0.20749 0.55042
RegenerationBL 0.315 5.922 0.26857 0.62770
RegenerationTP 0.598 5.922 0.05420 0.38021


Genes with expression patterns similar to MligTC455_16267

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_16267 2598 54.13 Mlig455_008544

Neo: -

Age: -

 SUGT1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_008544 {REF} {Length: 1065} {TRANSSPLICED} {Pfam: SGS domain [PF05002.17, score=111.3]; CS domain [PF04969.18, score=24.9]} {Human: ENSG00000165416, SUGT1, SGT1 homolog, MIS12 kinetochore complex assembly cochaperone, [RH, Score=125, Expect=4e-34]} {Mouse: ENSMUSG00000022024, Sugt1, SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae), [RH, Score=130, Expect=8e-36]} {Dmel: FBgn0265101, Sgt1, suppressor-of-G2-allele-of-skp1, [RH, Score=117, Expect=7e-33]} {Celegans: WBGene00008371, D1054.3, [RH, Score=120, Expect=5e-34]} {Smed: dd_Smed_v6_3826_0_1, dd_Smed_v6_3826_0_1, [RH, Score=115, Expect=2e-32]} {RNA1509_14874, RNA1509_3985, RNA1509_56406} {RNA1310_20250, RNA1509_14874, RNA1509_3985, RNA1509_56406} {RNA1509_14874, RNA1509_3985, RNA1509_56406, RNA815_14921}
2. MligTC455_16268 2679 55.81 Mlig455_018210

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.870

 SUGT1 5.902 0.985 0.994 0.996 0.997 0.998 0.932 Mlig455_018210 {REF} {Length: 1065} {TRANSSPLICED} {Pfam: SGS domain [PF05002.17, score=111.2]; CS domain [PF04969.18, score=25.7]} {Human: ENSG00000165416, SUGT1, SGT1 homolog, MIS12 kinetochore complex assembly cochaperone, [RH, Score=127, Expect=1e-34]} {Mouse: ENSMUSG00000022024, Sugt1, SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae), [RH, Score=131, Expect=2e-36]} {Dmel: FBgn0265101, Sgt1, suppressor-of-G2-allele-of-skp1, [RH, Score=116, Expect=2e-32]} {Celegans: WBGene00008371, D1054.3, [RH, Score=120, Expect=9e-34]} {Smed: dd_Smed_v6_3826_0_1, dd_Smed_v6_3826_0_1, [RH, Score=118, Expect=3e-33]} {RNA1509_14874} {RNA1310_20250} {RNA815_14921}
3. MligTC455_23363 1562 32.54 Mlig455_010054, Mlig455_063266

Neo: Irradiation

Age: -

Region-enriched R5: 1.935/0.00000
Region-enriched R4: 1.282/0.00824

Regeneration-upregulated TP: 2.464

Regeneration-enriched TP: 2.464

 NAP1L4 0.978 - - - 0.978 - -

Mlig455_010054 {REF} {Length: 2383} {TRANSSPLICED} {Pfam: Nucleosome assembly protein (NAP) [PF00956.20, score=311.0]} {Human: ENSG00000205531, NAP1L4, nucleosome assembly protein 1 like 4, [Score=272, Expect=5e-85]; ENSG00000273562, NAP1L4, nucleosome assembly protein 1 like 4, [Score=272, Expect=5e-85]; ENSG00000187109, NAP1L1, nucleosome assembly protein 1 like 1, [Score=271, Expect=3e-84]} {Mouse: ENSMUSG00000059119, Nap1l4, nucleosome assembly protein 1-like 4, [Score=281, Expect=1e-88]; ENSMUSG00000058799, Nap1l1, nucleosome assembly protein 1-like 1, [Score=271, Expect=1e-84]} {Dmel: FBgn0015268, Nap1, Nucleosome assembly protein 1, [Score=256, Expect=2e-79]} {Celegans: WBGene00017075, nap-1, Nucleosome Assembly Protein, [Score=196, Expect=3e-57]} {Smed: dd_Smed_v6_997_0_1, dd_Smed_v6_997_0_1, [Score=290, Expect=2e-92]} {RNA1509_37542} {RNA1310_23422} {RNA815_10704}

Mlig455_063266 {REF} {Length: 2409} {TRANSSPLICED} {Pfam: Nucleosome assembly protein (NAP) [PF00956.20, score=310.8]} {Human: ENSG00000273562, NAP1L4, nucleosome assembly protein 1 like 4, [Score=268, Expect=3e-83]; ENSG00000205531, NAP1L4, nucleosome assembly protein 1 like 4, [Score=268, Expect=3e-83]; ENSG00000187109, NAP1L1, nucleosome assembly protein 1 like 1, [Score=264, Expect=1e-81]} {Mouse: ENSMUSG00000059119, Nap1l4, nucleosome assembly protein 1-like 4, [Score=277, Expect=6e-87]; ENSMUSG00000058799, Nap1l1, nucleosome assembly protein 1-like 1, [Score=265, Expect=5e-82]} {Dmel: FBgn0015268, Nap1, Nucleosome assembly protein 1, [Score=254, Expect=2e-78]} {Celegans: WBGene00017075, nap-1, Nucleosome Assembly Protein, [Score=193, Expect=5e-56]} {Smed: dd_Smed_v6_997_0_1, dd_Smed_v6_997_0_1, [Score=282, Expect=2e-89]} {RNA1509_22373, RNA1509_40649} {RNA1310_23422, RNA1509_22373} {RNA1509_22373, RNA815_10704}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA