TomoSeq data search

Data search

Results for MligTC455_16272

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_16272	170	3.54	Mlig455_042206	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.570	TRPM1	Mlig455_042206 {REF} {Length: 3835} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=68.4]; Ankyrin repeats (many copies) [PF13637.8, score=65.1]; Ankyrin repeats (many copies) [PF13857.8, score=59.8]; Ankyrin repeat [PF13606.8, score=56.1]; Ion transport protein [PF00520.33, score=50.9]; Ankyrin repeat [PF00023.32, score=37.8]} {Human: ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=123, Expect=9e-28]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=123, Expect=8e-28]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=125, Expect=2e-28]} {Dmel: FBgn0005614, trpl, transient receptor potential-like, [Score=71.2, Expect=5e-12]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=95.1, Expect=2e-19]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=199, Expect=4e-52]} {RNA1509_2368} {RNA1310_977, RNA1509_2368} {RNA1509_2368, RNA815_2896}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_16272

170

3.54

Mlig455_042206

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.570

TRPM1

Mlig455_042206 {REF} {Length: 3835} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=68.4]; Ankyrin repeats (many copies) [PF13637.8, score=65.1]; Ankyrin repeats (many copies) [PF13857.8, score=59.8]; Ankyrin repeat [PF13606.8, score=56.1]; Ion transport protein [PF00520.33, score=50.9]; Ankyrin repeat [PF00023.32, score=37.8]} {Human: ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=123, Expect=9e-28]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=123, Expect=8e-28]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=125, Expect=2e-28]} {Dmel: FBgn0005614, trpl, transient receptor potential-like, [Score=71.2, Expect=5e-12]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=95.1, Expect=2e-19]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=199, Expect=4e-52]} {RNA1509_2368} {RNA1310_977, RNA1509_2368} {RNA1509_2368, RNA815_2896}

Cumulative graph for MligTC455_16272

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	2.742	2.567	0.17188	0.79728
RegionR2	0.061	2.567	0.95012	1.00000
RegionR3	-0.86	2.567	0.22663	0.76848
RegionR4	0.8	2.567	0.37865	0.70295
RegionR5	-0.944	2.567	0.15749	0.41650
RegionR6	-1.067	2.567	0.16604	0.72114
RegionR7	-1.121	2.567	0.32922	0.96447
RegionR8	0.389	2.567	0.74646	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-6.852	2.567	0.16363	0.90551
RegenerationR2	0.541	2.567	0.34827	0.78072
RegenerationR3	1.31	2.567	0.09173	0.48875
RegenerationR4	0.84	2.567	0.30949	0.74964
RegenerationR5	1.439	2.567	0.04651	0.34977
RegenerationR6	1.077	2.567	0.18422	0.52003
RegenerationBL	0.001	2.567	0.99667	1.00000
RegenerationTP	0.312	2.567	0.77984	1.00000

Genes with expression patterns similar to MligTC455_16272

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16272	170	3.54	Mlig455_042206	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.570	TRPM1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_042206 {REF} {Length: 3835} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=68.4]; Ankyrin repeats (many copies) [PF13637.8, score=65.1]; Ankyrin repeats (many copies) [PF13857.8, score=59.8]; Ankyrin repeat [PF13606.8, score=56.1]; Ion transport protein [PF00520.33, score=50.9]; Ankyrin repeat [PF00023.32, score=37.8]} {Human: ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=123, Expect=9e-28]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=123, Expect=8e-28]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=125, Expect=2e-28]} {Dmel: FBgn0005614, trpl, transient receptor potential-like, [Score=71.2, Expect=5e-12]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=95.1, Expect=2e-19]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=199, Expect=4e-52]} {RNA1509_2368} {RNA1310_977, RNA1509_2368} {RNA1509_2368, RNA815_2896}
2.	MligTC455_47880	377	7.85	Mlig455_003874	Neo: Int S/G2/M Age: Down-Up-Up		0.971	-	-	-	0.971	-	-	Mlig455_003874 {REF} {Length: 1704} {TRANSSPLICED} {RNA1509_15949, RNA1509_23469} {RNA1310_16621.2, RNA1509_23469} {RNA1509_23469, RNA815_9106.1}
3.	MligTC455_21146	27	0.55	Mlig455_064254	Neo: - Age: -		0.969	-	-	0.969	-	-	-	Mlig455_064254 {REF} {Length: 2327} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=32.2]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=18.6]} {RNA1310_12459} {RNA815_30712}
4.	MligTC455_40713	71	1.48	Mlig455_047717	Neo: - Age: -	KCNMA1	0.959	-	-	0.959	-	-	-	Mlig455_047717 {REF} {Length: 4615} {Pfam: Calcium-activated BK potassium channel alpha subunit [PF03493.20, score=104.5]; Ion transport protein [PF00520.33, score=59.3]; Ion channel [PF07885.18, score=49.9]; TrkA-N domain [PF02254.20, score=22.2]} {Human: ENSG00000156113, KCNMA1, potassium calcium-activated channel subfamily M alpha 1, [RH, Score=976, Expect=0.0]} {Mouse: ENSMUSG00000063142, Kcnma1, potassium large conductance calcium-activated channel, subfamily M, alpha member 1, [Score=995, Expect=0.0]} {Dmel: FBgn0003429, slo, slowpoke, [Score=1077, Expect=0.0]} {Celegans: WBGene00004830, slo-1, Calcium-activated potassium channel slo-1, [Score=993, Expect=0.0]} {Smed: dd_Smed_v6_5509_0_1, dd_Smed_v6_5509_0_1, [Score=1043, Expect=0.0]} {RNA1509_27885} {RNA1310_2876} {RNA815_9989}
5.	MligTC455_46788	260	5.41	Mlig455_063761	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.663		0.957	-	-	-	0.957	-	-	Mlig455_063761 {REF} {Length: 329} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_38481} {RNA1310_68166.1, RNA1509_38481} {RNA1509_38481, RNA815_35753}
6.	MligTC455_07805	688	14.32	Mlig455_000060, Mlig455_057252	Neo: - Age: -	WDR97	0.951	-	-	-	0.951	-	-	Mlig455_000060 {REF} {Length: 5357} {Pfam: WD domain, G-beta repeat [PF00400.34, score=58.2]} {Human: ENSG00000179698, WDR97, WD repeat domain 97, [Score=234, Expect=7e-62]} {Mouse: ENSMUSG00000109179, Gm35339, predicted gene, 35339, [Score=156, Expect=8e-38]} {Dmel: FBgn0025725, alphaCOP, Coat Protein (coatomer) alpha, [Score=51.2, Expect=7e-06]} {Celegans: WBGene00270321, Y41C4A.32, [Score=56.6, Expect=4e-08]} {Smed: dd_Smed_v6_11828_0_1, dd_Smed_v6_11828_0_1, [Score=384, Expect=1e-111]} {RNA1509_10940} {RNA1310_1415} {RNA815_8779} Mlig455_057252 {REF} {Length: 224} {Human: ENSG00000179698, WDR97, WD repeat domain 97, [Score=62.4, Expect=1e-12]} {Mouse: ENSMUSG00000109179, Gm35339, predicted gene, 35339, [Score=66.6, Expect=2e-14]} {Smed: dd_Smed_v6_11828_0_1, dd_Smed_v6_11828_0_1, [Score=52.0, Expect=1e-09]} {RNA1509_10940} {RNA1310_1415} {RNA815_8779}