TomoSeq data search

Data search

Results for MligTC455_16384

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_16384	177	3.68	Mlig455_053786	Neo: - Age: -		Mlig455_053786 {REF} {Length: 1773} {RNA1509_22149} {RNA1310_32048} {RNA815_12368}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_16384

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.339	2.56	0.88091	1.00000
RegionR2	0.011	2.56	0.98294	1.00000
RegionR3	-1.112	2.56	0.12896	0.61694
RegionR4	1.406	2.56	0.03654	0.15597
RegionR5	-0.421	2.56	0.49175	0.85500
RegionR6	-0.234	2.56	0.73574	1.00000
RegionR7	0.63	2.56	0.47139	1.00000
RegionR8	-0.62	2.56	0.65528	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-4.98	2.56	0.41411	1.00000
RegenerationR2	0.802	2.56	0.13984	0.56916
RegenerationR3	1.658	2.56	0.01687	0.23743
RegenerationR4	-0.391	2.56	0.51850	0.87891
RegenerationR5	1.006	2.56	0.07415	0.42622
RegenerationR6	0.828	2.56	0.21793	0.56221
RegenerationBL	0.705	2.56	0.44480	0.81206
RegenerationTP	0.919	2.56	0.34532	0.78755

Genes with expression patterns similar to MligTC455_16384

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16384	177	3.68	Mlig455_053786	Neo: - Age: -		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_053786 {REF} {Length: 1773} {RNA1509_22149} {RNA1310_32048} {RNA815_12368}
2.	MligTC455_40324	1334	27.79	Mlig455_011153, Mlig455_050865	Neo: - Age: Down-Down-Up		0.967	-	-	-	-	0.967	-	Mlig455_011153 {REF} {Length: 1364} {RNA1509_34943} {RNA1310_14839} {RNA815_5587.1} Mlig455_050865 {REF} {Length: 2515} {RNA1509_34943} {RNA1310_14839, RNA1509_34943} {RNA1509_34943, RNA815_5587.1}
3.	MligTC455_26421	116	2.41	Mlig455_006485	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.292	RAPGEF2	0.957	-	-	-	-	0.957	-	Mlig455_006485 {REF} {Length: 8114} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=127.5]; PDZ domain [PF17820.3, score=38.4]; PDZ domain [PF00595.26, score=31.6]; RasGEF N-terminal motif [PF00618.22, score=30.3]; Cyclic nucleotide-binding domain [PF00027.31, score=25.8]; Ras association (RalGDS/AF-6) domain [PF00788.25, score=24.1]; PDZ domain [PF13180.8, score=23.1]} {Human: ENSG00000109756, RAPGEF2, Rap guanine nucleotide exchange factor 2, [RH, Score=476, Expect=2e-144]} {Mouse: ENSMUSG00000062232, Rapgef2, Rap guanine nucleotide exchange factor (GEF) 2, [RH, Score=478, Expect=4e-145]} {Dmel: FBgn0265778, PDZ-GEF, PDZ domain-containing guanine nucleotide exchange factor, [RH, Score=262, Expect=6e-71]} {Celegans: WBGene00004254, pxf-1, Rap guanine nucleotide exchange factor, [RH, Score=222, Expect=1e-58]} {Smed: dd_Smed_v6_4950_0_3, dd_Smed_v6_4950_0_3, [RH, Score=434, Expect=2e-129]} {RNA1509_7322} {RNA1310_804.3} {RNA815_1044}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_16384

177

3.68

Mlig455_053786

Neo: -

Age: -

1.000

Mlig455_053786 {REF} {Length: 1773} {RNA1509_22149} {RNA1310_32048} {RNA815_12368}

MligTC455_40324

1334

27.79

Mlig455_011153, Mlig455_050865

Neo: -

Age: Down-Down-Up

0.967

Mlig455_011153 {REF} {Length: 1364} {RNA1509_34943} {RNA1310_14839} {RNA815_5587.1}

Mlig455_050865 {REF} {Length: 2515} {RNA1509_34943} {RNA1310_14839, RNA1509_34943} {RNA1509_34943, RNA815_5587.1}

MligTC455_26421

116

2.41

Mlig455_006485

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.292

RAPGEF2

0.957

Mlig455_006485 {REF} {Length: 8114} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=127.5]; PDZ domain [PF17820.3, score=38.4]; PDZ domain [PF00595.26, score=31.6]; RasGEF N-terminal motif [PF00618.22, score=30.3]; Cyclic nucleotide-binding domain [PF00027.31, score=25.8]; Ras association (RalGDS/AF-6) domain [PF00788.25, score=24.1]; PDZ domain [PF13180.8, score=23.1]} {Human: ENSG00000109756, RAPGEF2, Rap guanine nucleotide exchange factor 2, [RH, Score=476, Expect=2e-144]} {Mouse: ENSMUSG00000062232, Rapgef2, Rap guanine nucleotide exchange factor (GEF) 2, [RH, Score=478, Expect=4e-145]} {Dmel: FBgn0265778, PDZ-GEF, PDZ domain-containing guanine nucleotide exchange factor, [RH, Score=262, Expect=6e-71]} {Celegans: WBGene00004254, pxf-1, Rap guanine nucleotide exchange factor, [RH, Score=222, Expect=1e-58]} {Smed: dd_Smed_v6_4950_0_3, dd_Smed_v6_4950_0_3, [RH, Score=434, Expect=2e-129]} {RNA1509_7322} {RNA1310_804.3} {RNA815_1044}