Data search
Results for MligTC455_16580
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_16580 | 257 | 5.36 | Mlig455_002672 | Neo: Irradiation Age: Up-Down-Down |
Mlig455_002672 {REF} {Length: 5439} {Mouse: ENSMUSG00000020154, Ptprb, protein tyrosine phosphatase, receptor type, B, [Score=56.2, Expect=3e-07]} {RNA1509_28509, RNA1509_37252} {RNA1310_14831.1, RNA1509_37252} {RNA1509_37252, RNA815_5519.1} |
Cumulative graph for MligTC455_16580
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 1.054 | 3.041 | 0.53076 | 1.00000 | |
| RegionR2 | -0.069 | 3.041 | 0.93662 | 1.00000 | |
| RegionR3 | -0.169 | 3.041 | 0.80912 | 1.00000 | |
| RegionR4 | 0.441 | 3.041 | 0.58307 | 0.89915 | |
| RegionR5 | 0.343 | 3.041 | 0.55643 | 0.91665 | |
| RegionR6 | -0.762 | 3.041 | 0.29277 | 0.88422 | |
| RegionR7 | 0.031 | 3.041 | 0.97196 | 1.00000 | |
| RegionR8 | -0.868 | 3.041 | 0.54285 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 0.071 | 3.041 | 0.97672 | 1.00000 | |
| RegenerationR2 | 1.647 | 3.041 | 0.01985 | 0.23124 | |
| RegenerationR3 | 0.828 | 3.041 | 0.30699 | 0.73752 | |
| RegenerationR4 | 0.237 | 3.041 | 0.76711 | 0.97562 | |
| RegenerationR5 | 0.68 | 3.041 | 0.32328 | 0.74586 | |
| RegenerationR6 | 1.755 | 3.041 | 0.03148 | 0.22171 | |
| RegenerationBL | 0.987 | 3.041 | 0.36525 | 0.73368 | |
| RegenerationTP | 0.946 | 3.041 | 0.40355 | 0.83161 |
Genes with expression patterns similar to MligTC455_16580
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_16580 | 257 | 5.36 | Mlig455_002672 | Neo: Irradiation Age: Up-Down-Down |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_002672 {REF} {Length: 5439} {Mouse: ENSMUSG00000020154, Ptprb, protein tyrosine phosphatase, receptor type, B, [Score=56.2, Expect=3e-07]} {RNA1509_28509, RNA1509_37252} {RNA1310_14831.1, RNA1509_37252} {RNA1509_37252, RNA815_5519.1} | |
| 2. | MligTC455_28362 | 852 | 17.75 | Mlig455_031039, Mlig455_047027 | Neo: - Age: - Region-enriched R5: 1.224/0.02131 Regeneration-upregulated R6: 2.337 Regeneration-enriched R6: 2.337 |
RTL1 | 0.957 | - | - | - | 0.957 | - | - | Mlig455_031039 {REF} {Length: 9265} {TRANSSPLICED} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=31.5]; Zinc knuckle [PF13696.8, score=23.2]; Zinc knuckle [PF00098.25, score=22.9]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} Mlig455_047027 {REF} {Length: 9661} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.4]; Integrase core domain [PF00665.28, score=46.7]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.8]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.4]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.4, Expect=5e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=1e-05]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=317, Expect=3e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} |
| 3. | MligTC455_52389 | 545 | 11.36 | Mlig455_012827 | Neo: - Age: - |
0.953 | - | - | - | - | - | 0.953 | Mlig455_012827 {REF} {Length: 1894} {NoTransDecoderORF} {RNA1509_39500} {RNA1310_34800, RNA1509_39500} {RNA1509_39500, RNA815_18137.1} | |
| 4. | MligTC455_19619 | 505 | 10.52 | Mlig455_019413 | Neo: - Age: logFC(26M/2M)=3.064 |
GHITM | 0.951 | - | - | - | 0.951 | - | - | Mlig455_019413 {REF} {Length: 1374} {Pfam: Inhibitor of apoptosis-promoting Bax1 [PF01027.22, score=152.9]} {Human: ENSG00000165678, GHITM, growth hormone inducible transmembrane protein, [RH, Score=247, Expect=1e-79]} {Mouse: ENSMUSG00000041028, Ghitm, growth hormone inducible transmembrane protein, [RH, Score=244, Expect=8e-79]} {Dmel: FBgn0030263, CG2076, [RH, Score=253, Expect=3e-82]} {Celegans: WBGene00019664, K11H12.8, [RH, Score=223, Expect=2e-70]} {Smed: dd_Smed_v6_754_0_1, dd_Smed_v6_754_0_1, [RH, Score=211, Expect=6e-66]} {RNA1509_3934} {RNA1310_24357.2} {RNA815_10661} |
| 5. | MligTC455_20077 | 331 | 6.9 | Mlig455_005551 | Neo: - Age: Up-Down-Up |
RABL6 | 0.951 | - | - | - | - | - | 0.951 | Mlig455_005551 {REF} {Length: 4721} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=80.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=64.5]; ADP-ribosylation factor family [PF00025.23, score=49.0]; 50S ribosome-binding GTPase [PF01926.25, score=41.0]; Virulence-associated protein E [PF05272.13, score=22.1]; Bacterial TniB protein [PF05621.13, score=21.5]; RsgA GTPase [PF03193.18, score=18.8]} {Human: ENSG00000196642, RABL6, RAB, member RAS oncogene family like 6, [RH, Score=295, Expect=5e-88]} {Mouse: ENSMUSG00000015087, Rabl6, RAB, member RAS oncogene family-like 6, [RH, Score=276, Expect=3e-81]} {Dmel: FBgn0030200, RabX2, [Score=62.8, Expect=6e-11]} {Celegans: WBGene00008585, F08G12.1, [RH, Score=226, Expect=7e-64]} {Smed: dd_Smed_v6_6925_0_3, dd_Smed_v6_6925_0_3, [RH, Score=290, Expect=2e-91]} {RNA1509_28934} {RNA1310_15803} {RNA815_6147.1} |
| 6. | MligTC455_20766 | 227 | 4.73 | Mlig455_008953 | Neo: - Age: Up-Down-Down |
FRYL | 0.95 | - | - | - | - | - | 0.950 | Mlig455_008953 {REF} {Length: 10337} {TRANSSPLICED} {Pfam: Cell morphogenesis N-terminal [PF14222.8, score=453.4]; Cell morphogenesis C-terminal [PF14225.8, score=68.2]} {Human: ENSG00000075539, FRYL, FRY like transcription coactivator, [RH, Score=712, Expect=0.0]; ENSG00000073910, FRY, FRY microtubule binding protein, [RH, Score=691, Expect=0.0]} {Mouse: ENSMUSG00000070733, Fryl, FRY like transcription coactivator, [RH, Score=716, Expect=0.0]; ENSMUSG00000056602, Fry, FRY microtubule binding protein, [RH, Score=686, Expect=0.0]} {Dmel: FBgn0016081, fry, furry, [RH, Score=599, Expect=3e-172]} {Celegans: WBGene00004728, sax-2, Sensory AXon guidance, [RH, Score=474, Expect=5e-134]} {Smed: dd_Smed_v6_4962_0_1, dd_Smed_v6_4962_0_1, [RH, Score=448, Expect=4e-126]} {RNA1509_6798} {RNA1310_298} {RNA815_1569} |
| 7. | MligTC455_25177 | 330 | 6.87 | Mlig455_058575 | Neo: - Age: Up-Down-Down |
0.95 | - | - | - | - | - | 0.950 | Mlig455_058575 {REF} {Length: 3172} {RNA1509_34496, RNA1509_56824} {RNA1310_29369, RNA1509_34496} {RNA1509_34496, RNA815_24472} | |
| 8. | MligTC455_53899 | 383 | 7.97 | Mlig455_023534 | Neo: - Age: Up-Down-Down |
0.95 | - | - | - | - | - | 0.950 | Mlig455_023534 {REF} {Length: 3534} {TRANSSPLICED} {Pfam: FG-GAP-like repeat [PF13517.8, score=20.4]} {RNA1509_16650} {RNA1310_9337} {RNA815_4413} |
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