Data search
Results for MligTC455_28362
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_28362 | 852 | 17.75 | Mlig455_031039, Mlig455_047027 | Neo: - Age: - Region-enriched R5: 1.224/0.02131 Regeneration-upregulated R6: 2.337 Regeneration-enriched R6: 2.337 |
RTL1 | Mlig455_031039 {REF} {Length: 9265} {TRANSSPLICED} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=31.5]; Zinc knuckle [PF13696.8, score=23.2]; Zinc knuckle [PF00098.25, score=22.9]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} Mlig455_047027 {REF} {Length: 9661} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.4]; Integrase core domain [PF00665.28, score=46.7]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.8]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.4]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.4, Expect=5e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=1e-05]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=317, Expect=3e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} |
Cumulative graph for MligTC455_28362
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.409 | 4.346 | 0.35727 | 0.99979 | |
| RegionR2 | -0.003 | 4.346 | 0.99612 | 1.00000 | |
| RegionR3 | -0.251 | 4.346 | 0.62763 | 1.00000 | |
| RegionR4 | -0.037 | 4.346 | 0.95352 | 1.00000 | |
| RegionR5 | 1.224 | 4.346 | 0.00260 | 0.02131 | |
| RegionR6 | -0.1 | 4.346 | 0.84940 | 1.00000 | |
| RegionR7 | 0.242 | 4.346 | 0.70471 | 1.00000 | |
| RegionR8 | 0.333 | 4.346 | 0.67415 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 2.718 | 4.346 | 0.11566 | 0.84201 | |
| RegenerationR2 | 0.951 | 4.346 | 0.06479 | 0.41699 | |
| RegenerationR3 | 1.411 | 4.346 | 0.01351 | 0.21372 | |
| RegenerationR4 | 0.977 | 4.346 | 0.06802 | 0.41653 | |
| RegenerationR5 | 0.452 | 4.346 | 0.35167 | 0.76553 | |
| RegenerationR6 | 2.337 | 4.346 | 0.00002 | 0.00267 | Specific for R6: 2.337 |
| RegenerationBL | 1.797 | 4.346 | 0.00177 | 0.03326 | |
| RegenerationTP | 0.221 | 4.346 | 0.74869 | 1.00000 |
Genes with expression patterns similar to MligTC455_28362
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_28362 | 852 | 17.75 | Mlig455_031039, Mlig455_047027 | Neo: - Age: - Region-enriched R5: 1.224/0.02131 Regeneration-upregulated R6: 2.337 Regeneration-enriched R6: 2.337 |
RTL1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_031039 {REF} {Length: 9265} {TRANSSPLICED} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=31.5]; Zinc knuckle [PF13696.8, score=23.2]; Zinc knuckle [PF00098.25, score=22.9]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} Mlig455_047027 {REF} {Length: 9661} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.4]; Integrase core domain [PF00665.28, score=46.7]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.8]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.4]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.4, Expect=5e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=1e-05]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=317, Expect=3e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} |
| 2. | MligTC455_28364 | 467 | 9.73 | Mlig455_061240, Mlig455_061241 | Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.355 Regeneration-upregulated R6: 2.218 Regeneration-enriched R6: 2.218 |
RTL1 | 5.78 | 0.975 | 0.974 | 0.913 | 0.968 | 0.966 | 0.984 | Mlig455_061240 {REF} {Length: 5353} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=103.3]; 'Cold-shock' DNA-binding domain [PF00313.24, score=30.2]; Aspartyl protease [PF13650.8, score=21.9]; Zinc knuckle [PF13696.8, score=21.9]; Zinc knuckle [PF00098.25, score=21.6]; gag-polyprotein putative aspartyl protease [PF13975.8, score=21.3]; Aspartyl protease [PF09668.12, score=20.4]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=57.4, Expect=2e-07]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=5e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=203, Expect=8e-56]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} Mlig455_061241 {REF} {Length: 5317} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=98.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=96.7]; Integrase core domain [PF00665.28, score=47.7]; Integrase zinc binding domain [PF17921.3, score=38.4]; H2C2 zinc finger [PF09337.12, score=19.5]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=147, Expect=7e-38]} {RNA1509_4878, RNA1509_55705} {RNA1310_542.1, RNA1509_55705} {RNA1509_55705, RNA815_7586} |
| 3. | MligTC455_28361 | 440 | 9.16 | Mlig455_040638 | Neo: Int S/G2/M Age: - Region-enriched R5: 1.191/0.01323 Regeneration-upregulated R6: 2.081 Regeneration-enriched R6: 2.081 |
RTL1 | 5.627 | 0.901 | 0.966 | 0.904 | 0.942 | 0.969 | 0.945 | Mlig455_040638 {REF} {Length: 10716} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.3]; Integrase core domain [PF00665.28, score=46.4]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.2]; Zinc knuckle [PF00098.25, score=20.9]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.4]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.8, Expect=4e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=9e-06]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=317, Expect=3e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} |
| 4. | MligTC455_28365 | 270 | 5.63 | Mlig455_068689 | Neo: - Age: Up-Down-Down Region-enriched R5: 1.758/0.01074 |
RTL1 | 5.479 | 0.924 | 0.952 | 0.791 | 0.932 | 0.944 | 0.936 | Mlig455_068689 {REF} {Length: 9784} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=100.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.3]; Integrase core domain [PF00665.28, score=46.4]; Integrase zinc binding domain [PF17921.3, score=35.6]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.6]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.8]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.4]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.4, Expect=5e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=9e-06]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=317, Expect=2e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} |
| 5. | MligTC455_16580 | 257 | 5.36 | Mlig455_002672 | Neo: Irradiation Age: Up-Down-Down |
0.957 | - | - | - | 0.957 | - | - | Mlig455_002672 {REF} {Length: 5439} {Mouse: ENSMUSG00000020154, Ptprb, protein tyrosine phosphatase, receptor type, B, [Score=56.2, Expect=3e-07]} {RNA1509_28509, RNA1509_37252} {RNA1310_14831.1, RNA1509_37252} {RNA1509_37252, RNA815_5519.1} | |
| 6. | MligTC455_43088 | 139 | 2.89 | Mlig455_060075 | Neo: - Age: - |
0.956 | - | - | - | 0.956 | - | - | Mlig455_060075 {REF} {Length: 3084} {Pfam: Homeodomain [PF00046.31, score=37.4]; Ubiquitin-like oligomerisation domain of SATB [PF16534.7, score=31.1]} {Dmel: FBgn0020307, dve, defective proventriculus, [RH, Score=102, Expect=2e-22]} {Celegans: WBGene00022861, dve-1, [RH, Score=82.8, Expect=1e-16]} {RNA1310_30262} {RNA815_49480} |