M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_16654

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16654 52 1.07 Mlig455_007810

Neo: -

Age: -

 Mlig455_007810 {REF} {Length: 302} {NoTransDecoderORF} {RNA1310_58645} {RNA815_47584}

Cumulative graph for MligTC455_16654

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.74 1.269 0.99985 1.00000
RegionR2 -0.12 1.269 0.69293 1.00000
RegionR3 1.127 1.269 0.33812 0.87425
RegionR4 1.206 1.269 0.29823 0.61038
RegionR5 1.5 1.269 0.18930 0.47219
RegionR6 -2.511 1.269 0.99963 1.00000
RegionR7 -2.637 1.269 0.99969 1.00000
RegionR8 4.175 1.269 0.01799 0.26118

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.873 1.269 0.84626 1.00000
RegenerationR2 1.532 1.269 0.20140 0.64766
RegenerationR3 0.914 1.269 0.48465 0.85270
RegenerationR4 0.691 1.269 0.61961 0.92055
RegenerationR5 -1.961 1.269 0.12960 0.53493
RegenerationR6 3.584 1.269 0.05604 0.29698
RegenerationBL -2.897 1.269 0.99973 1.00000
RegenerationTP -3.452 1.269 0.99969 1.00000


Genes with expression patterns similar to MligTC455_16654

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_16654 52 1.07 Mlig455_007810

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_007810 {REF} {Length: 302} {NoTransDecoderORF} {RNA1310_58645} {RNA815_47584}
2. MligTC455_15225 28 0.58 Mlig455_012698

Neo: -

Age: -

 1.767 - - - - 0.957 0.810 Mlig455_012698 {REF} {Length: 1068} {NoTransDecoderORF}
3. MligTC455_16661 43 0.89 Mlig455_034421

Neo: -

Age: Down-Up-Down

 1.693 - - - - 0.734 0.959 Mlig455_034421 {REF} {Length: 1148} {RNA1310_46092} {RNA815_30614}
4. MligTC455_22435 71 1.48 Mlig455_000364, Mlig455_046129

Neo: -

Age: -

 0.971 - - - - 0.971 -

Mlig455_000364 {REF} {Length: 224} {NoTransDecoderORF} {RNA1509_56084} {RNA1310_16313} {RNA815_60226}

Mlig455_046129 {REF} {Length: 213} {NoTransDecoderORF} {RNA1509_56084} {RNA1310_16313} {RNA815_60226}
5. MligTC455_16150 267 5.56 Mlig455_057692

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.781

 KLHDC8A 0.962 - - - - 0.962 - Mlig455_057692 {REF} {Length: 1684} {Pfam: Kelch motif [PF13964.8, score=56.8]; Kelch motif [PF01344.27, score=52.7]; Kelch motif [PF07646.17, score=36.4]; Galactose oxidase, central domain [PF13418.8, score=35.1]; Kelch motif [PF13854.8, score=27.6]} {Human: ENSG00000162873, KLHDC8A, kelch domain containing 8A, [Score=58.5, Expect=3e-09]} {Mouse: ENSMUSG00000042115, Klhdc8a, kelch domain containing 8A, [Score=63.5, Expect=1e-10]} {Smed: dd_Smed_v6_14507_0_1, dd_Smed_v6_14507_0_1, [RH, Score=209, Expect=3e-63]} {RNA1509_58319, RNA1509_58644} {RNA1310_20213, RNA1509_58319, RNA1509_58644} {RNA1509_58319, RNA1509_58644, RNA815_8052}
6. MligTC455_40289 93 1.94 Mlig455_017727, Mlig455_056175

Neo: -

Age: -

 BMP1, CUBN 0.962 - - - - 0.962 -

Mlig455_017727 {REF} {Length: 1202} {Pfam: CUB domain [PF00431.22, score=55.3]} {Human: ENSG00000107611, CUBN, cubilin, [Score=54.7, Expect=4e-08]; ENSG00000168487, BMP1, bone morphogenetic protein 1, [Score=52.0, Expect=3e-07]} {Mouse: ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=51.6, Expect=3e-07]; ENSMUSG00000022098, Bmp1, bone morphogenetic protein 1, [Score=49.7, Expect=1e-06]} {Dmel: FBgn0003719, tld, tolloid, [Score=51.2, Expect=3e-07]} {Smed: dd_Smed_v6_69474_0_1, dd_Smed_v6_69474_0_1, [Score=47.4, Expect=2e-07]} {RNA1310_48745} {RNA815_23305}

Mlig455_056175 {REF} {Length: 2747} {Pfam: CUB domain [PF00431.22, score=62.6]} {Human: ENSG00000168487, BMP1, bone morphogenetic protein 1, [Score=52.8, Expect=2e-07]; ENSG00000107611, CUBN, cubilin, [Score=51.6, Expect=4e-07]} {Mouse: ENSMUSG00000022098, Bmp1, bone morphogenetic protein 1, [Score=51.6, Expect=3e-07]; ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=49.7, Expect=1e-06]} {Dmel: FBgn0003719, tld, tolloid, [Score=51.2, Expect=3e-07]} {Smed: dd_Smed_v6_69474_0_1, dd_Smed_v6_69474_0_1, [Score=47.0, Expect=3e-07]} {RNA1310_48745} {RNA815_23305}
7. MligTC455_01380 20 0.42 Mlig455_006074

Neo: -

Age: -

 0.961 - - - - - 0.961 Mlig455_006074 {REF} {Length: 823} {NoTransDecoderORF} {RNA1509_27021} {RNA1310_10847.1} {RNA815_5428.1}
8. MligTC455_37106 54 1.13 Mlig455_057730

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_057730 {REF} {Length: 2467} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_34323} {RNA815_33771.1}
9. MligTC455_28796 121 2.53 Mlig455_000324, Mlig455_013478, Mlig455_013479, Mlig455_020608, Mlig455_044509

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_000324 {REF} {Length: 1035} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=38.7]; Integrase zinc binding domain [PF17921.3, score=35.8]; H2C2 zinc finger [PF09337.12, score=19.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=49.7, Expect=2e-06]} {RNA1509_50200} {RNA1310_832} {RNA815_31737}

Mlig455_013478 {REF} {Length: 907} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=38.7]; Integrase zinc binding domain [PF17921.3, score=35.8]; H2C2 zinc finger [PF09337.12, score=19.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=49.7, Expect=2e-06]} {RNA1310_832} {RNA815_31737}

Mlig455_013479 {REF} {Length: 1374} {NoTransDecoderORF} {RNA1509_53012} {RNA1310_64055} {RNA815_9365}

Mlig455_020608 {REF} {Length: 12424} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=151.6]} {Smed: dd_Smed_v6_8949_0_1, dd_Smed_v6_8949_0_1, [Score=74.7, Expect=6e-14]} {RNA1509_53012} {RNA1310_832} {RNA815_19380}

Mlig455_044509 {REF} {Length: 12424} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=151.9]} {Smed: dd_Smed_v6_8949_0_1, dd_Smed_v6_8949_0_1, [Score=74.7, Expect=7e-14]} {RNA1509_53012} {RNA1310_832, RNA1509_53012} {RNA1509_53012, RNA815_19380}
10. MligTC455_45205 147 3.06 Mlig455_058679

Neo: Int S/G2/M

Age: -

Region-enriched R2: 3.694/0.00736
Region-enriched R4: 2.642/0.00370

 0.96 - - - - 0.960 - Mlig455_058679 {REF} {Length: 1141} {RNA1509_48085} {RNA1310_40804} {RNA815_27336}
11. MligTC455_49417 47 0.97 Mlig455_018820

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_018820 {REF} {Length: 1221} {RNA1509_32397} {RNA1310_33051} {RNA815_37385}
12. MligTC455_22555 16 0.34 Mlig455_014043

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_014043 {REF} {Length: 1521} {RNA1509_57689} {RNA1310_98725} {RNA815_30060}
13. MligTC455_18879 26 0.55 Mlig455_063345

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_063345 {REF} {Length: 769} {NoTransDecoderORF}
14. MligTC455_25002 216 4.51 Mlig455_013904, Mlig455_041373, Mlig455_045919

Neo: Int S/G2/M

Age: -

 0.954 - - - - 0.954 -

Mlig455_013904 {REF} {Length: 312} {NoTransDecoderORF} {RNA1509_44157} {RNA1310_166} {RNA815_5586}

Mlig455_041373 {REF} {Length: 468} {NoTransDecoderORF} {RNA1509_44157} {RNA1310_166} {RNA815_5586}

Mlig455_045919 {REF} {Length: 169} {NoTransDecoderORF} {RNA1509_44157} {RNA1310_166} {RNA815_47560}
15. MligTC455_16729 75 1.57 Mlig455_013762

Neo: -

Age: Up-Down-Down

Region-enriched R4: 4.685/0.03582

 0.952 - - - - 0.952 - Mlig455_013762 {REF} {Length: 2706} {Pfam: Glycine rich protein [PF12810.9, score=24.7]; PAN domain [PF00024.28, score=18.7]} {RNA1310_22079} {RNA815_24304}
16. MligTC455_29745 26 0.54 Mlig455_030176

Neo: -

Age: logFC(26M/2M)=1.424

 URGCP 0.952 - - - - 0.952 - Mlig455_030176 {REF} {Length: 6051} {Pfam: Root hair defective 3 GTP-binding protein (RHD3) [PF05879.14, score=27.8]; Dynamin family [PF00350.25, score=19.4]} {Human: ENSG00000106608, URGCP, upregulator of cell proliferation, [Score=130, Expect=1e-29]} {Mouse: ENSMUSG00000078606, Gm4070, predicted gene 4070, [Score=524, Expect=1e-152]; ENSMUSG00000045868, Gvin1, GTPase, very large interferon inducible 1, [Score=523, Expect=1e-152]} {RNA1509_1879} {RNA1310_768} {RNA815_1275.1}
17. MligTC455_08568 50 1.04 Mlig455_023688

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_023688 {REF} {Length: 345} {NoTransDecoderORF} {RNA1509_8910} {RNA1310_44262} {RNA815_4406.1}
18. MligTC455_37350 54 1.12 Mlig455_052436

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_052436 {REF} {Length: 3228} {Pfam: PHD-finger [PF00628.31, score=24.5]} {RNA1509_53488} {RNA1310_40766}
19. MligTC455_18891 275 5.73 Mlig455_024941

Neo: -

Age: -

Region-enriched R2: 2.016/0.02450

 0.95 - - - - 0.950 - Mlig455_024941 {REF} {Length: 394} {NoTransDecoderORF} {RNA1509_45136} {RNA1310_56753} {RNA815_28269}
20. MligTC455_39260 117 2.44 Mlig455_036510

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_036510 {REF} {Length: 1933} {RNA1509_55500} {RNA1310_46864} {RNA815_57446}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA