M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25002

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25002 216 4.51 Mlig455_013904, Mlig455_041373, Mlig455_045919

Neo: Int S/G2/M

Age: -

Mlig455_013904 {REF} {Length: 312} {NoTransDecoderORF} {RNA1509_44157} {RNA1310_166} {RNA815_5586}

Mlig455_041373 {REF} {Length: 468} {NoTransDecoderORF} {RNA1509_44157} {RNA1310_166} {RNA815_5586}

Mlig455_045919 {REF} {Length: 169} {NoTransDecoderORF} {RNA1509_44157} {RNA1310_166} {RNA815_47560}

Cumulative graph for MligTC455_25002

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.629 2.732 0.99965 1.00000
RegionR2 2.212 2.732 0.16117 0.50228
RegionR3 0.42 2.732 0.68377 1.00000
RegionR4 2.221 2.732 0.10286 0.31316
RegionR5 -0.045 2.732 0.79457 1.00000
RegionR6 1.519 2.732 0.28064 0.87047
RegionR7 2.192 2.732 0.17348 0.76484
RegionR8 -3.891 2.732 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.391 2.732 1.00000 1.00000
RegenerationR2 2.061 2.732 0.04593 0.35421
RegenerationR3 2.291 2.732 0.06725 0.43627
RegenerationR4 0.813 2.732 0.50025 0.86962
RegenerationR5 2.54 2.732 0.03707 0.31938
RegenerationR6 2.317 2.732 0.05203 0.28597
RegenerationBL 2.296 2.732 0.17702 0.50502
RegenerationTP 3.786 2.732 0.07412 0.43584


Genes with expression patterns similar to MligTC455_25002

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25002 216 4.51 Mlig455_013904, Mlig455_041373, Mlig455_045919

Neo: Int S/G2/M

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_013904 {REF} {Length: 312} {NoTransDecoderORF} {RNA1509_44157} {RNA1310_166} {RNA815_5586}

Mlig455_041373 {REF} {Length: 468} {NoTransDecoderORF} {RNA1509_44157} {RNA1310_166} {RNA815_5586}

Mlig455_045919 {REF} {Length: 169} {NoTransDecoderORF} {RNA1509_44157} {RNA1310_166} {RNA815_47560}
2. MligTC455_31637 158 3.29 Mlig455_011919, Mlig455_011929, Mlig455_027031

Neo: -

Age: Up-Down-Up

 1.764 - - - - 0.804 0.960

Mlig455_011919 {REF} {Length: 3794} {Pfam: MULE transposase domain [PF10551.11, score=19.8]} {RNA1509_42928} {RNA1310_22278} {RNA815_25813.1}

Mlig455_011929 {REF} {Length: 6289} {Pfam: MULE transposase domain [PF10551.11, score=19.7]} {RNA1509_32522, RNA1509_53350} {RNA1310_5450.1, RNA1509_32522} {RNA1509_32522, RNA815_7136.2}

Mlig455_027031 {REF} {Length: 1091} {Pfam: MULE transposase domain [PF10551.11, score=20.0]} {RNA1310_22278} {RNA815_36567}
3. MligTC455_21762 134 2.8 Mlig455_031432

Neo: -

Age: -

 1.731 - - 0.770 - - 0.961 Mlig455_031432 {REF} {Length: 284} {NoTransDecoderORF} {RNA1509_42914} {RNA1310_99471} {RNA815_64986}
4. MligTC455_41723 46 0.97 Mlig455_001714

Neo: -

Age: -

 1.731 - - 0.772 - 0.959 - Mlig455_001714 {REF} {Length: 1881} {RNA1310_22665} {RNA815_13308}
5. MligTC455_52619 109 2.26 Mlig455_024816

Neo: -

Age: Down-Down-Up

 PCF11 1.72 - - - 0.741 0.979 - Mlig455_024816 {REF} {Length: 4120} {Pfam: CID domain [PF04818.15, score=23.9]} {Human: ENSG00000165494, PCF11, PCF11, cleavage and polyadenylation factor subunit, [Score=85.1, Expect=5e-16]} {Mouse: ENSMUSG00000041328, Pcf11, PCF11 cleavage and polyadenylation factor subunit, [Score=89.7, Expect=1e-17]} {Dmel: FBgn0264962, Pcf11, Protein 1 of cleavage and polyadenylation factor 1, [Score=66.2, Expect=1e-10]} {Celegans: WBGene00020092, pcf-11, Polyadenylation and cleavage factor homolog 11, [Score=58.2, Expect=2e-08]} {Smed: dd_Smed_v6_3280_0_1, dd_Smed_v6_3280_0_1, [Score=92.8, Expect=4e-19]} {RNA1509_14664} {RNA1310_4848.1} {RNA815_5846}
6. MligTC455_22356 28 0.57 Mlig455_009532

Neo: -

Age: -

Region-enriched R5: 4.548/0.03532

 GALR2 1.711 - - 0.756 - 0.955 - Mlig455_009532 {REF} {Length: 3801} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=72.4]} {Human: ENSG00000182687, GALR2, galanin receptor 2, [Score=50.8, Expect=6e-06]} {Dmel: FBgn0037408, NPFR, Neuropeptide F receptor, [Score=52.4, Expect=1e-06]} {Celegans: WBGene00001052, dop-1, DOPamine receptor, [Score=50.1, Expect=3e-06]} {Smed: dd_Smed_v6_23525_0_1, dd_Smed_v6_23525_0_1, [Score=126, Expect=3e-31]} {RNA1310_79397} {RNA815_39017}
7. MligTC455_34645 89 1.85 Mlig455_063696

Neo: -

Age: -

 1.676 - - - - 0.958 0.718 Mlig455_063696 {REF} {Length: 2850} {RNA1509_28247} {RNA1310_21726.1} {RNA815_14540}
8. MligTC455_47840 157 3.26 Mlig455_047942

Neo: -

Age: Down-Up-Down

 1.654 - - 0.953 - 0.701 - Mlig455_047942 {REF} {Length: 2066} {TRANSSPLICED} {Smed: dd_Smed_v6_9778_0_4, dd_Smed_v6_9778_0_4, [RH, Score=255, Expect=2e-83]} {RNA1509_19568, RNA1509_39726} {RNA1310_16157, RNA1509_19568, RNA1509_39726} {RNA1509_19568, RNA1509_39726, RNA815_7435.1}
9. MligTC455_52349 99 2.06 Mlig455_011056

Neo: -

Age: -

 DGKI 0.977 - - - - 0.977 - Mlig455_011056 {REF} {Length: 3706} {Pfam: Diacylglycerol kinase accessory domain [PF00609.21, score=146.1]; Diacylglycerol kinase catalytic domain [PF00781.26, score=101.1]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=31.0]; Proline-rich protein family 20 [PF15708.7, score=21.0]} {Human: ENSG00000157680, DGKI, diacylglycerol kinase iota, [Score=677, Expect=0.0]; ENSG00000149091, DGKZ, diacylglycerol kinase zeta, [Score=672, Expect=0.0]} {Mouse: ENSMUSG00000038665, Dgki, diacylglycerol kinase, iota, [Score=682, Expect=0.0]; ENSMUSG00000040479, Dgkz, diacylglycerol kinase zeta, [Score=667, Expect=0.0]} {Dmel: FBgn0261549, rdgA, retinal degeneration A, [Score=533, Expect=8e-173]} {Celegans: WBGene00019428, dgk-5, Putative diacylglycerol kinase K06A1.6, [RH, Score=491, Expect=4e-158]} {Smed: dd_Smed_v6_12579_0_4, dd_Smed_v6_12579_0_4, [Score=629, Expect=0.0]} {RNA1509_51540} {RNA1310_9558, RNA1509_51540} {RNA1509_51540, RNA815_11195}
10. MligTC455_48568 56 1.18 Mlig455_066807

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_066807 {REF} {Length: 1749} {NoTransDecoderORF} {RNA1310_59259}
11. MligTC455_53348 35 0.73 Mlig455_015410

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_015410 {REF} {Length: 651} {NoTransDecoderORF} {RNA1509_3658} {RNA1310_99291.2} {RNA815_125.1}
12. MligTC455_09059 61 1.27 Mlig455_023612, Mlig455_033807

Neo: -

Age: -

 0.962 - - - - 0.962 -

Mlig455_023612 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_57341} {RNA1310_49037} {RNA815_24538}

Mlig455_033807 {REF} {Length: 314} {NoTransDecoderORF} {RNA1509_43209} {RNA1310_49037} {RNA815_24538}
13. MligTC455_31984 39 0.8 Mlig455_037830

Neo: -

Age: logFC(26M/2M)=-0.509

 MAP3K4 0.96 - - - - 0.960 - Mlig455_037830 {REF} {Length: 4022} {Pfam: Protein kinase domain [PF00069.27, score=176.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=135.5]; Fungal protein kinase [PF17667.3, score=26.3]; Ankyrin repeats (many copies) [PF13637.8, score=21.9]; ABC1 atypical kinase-like domain [PF03109.18, score=20.5]} {Human: ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=118, Expect=1e-26]; ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=115, Expect=2e-26]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=116, Expect=8e-27]; ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=114, Expect=1e-25]} {Dmel: FBgn0024329, Mekk1, [Score=110, Expect=1e-24]} {Celegans: WBGene00006941, wnk-1, Serine/threonine-protein kinase WNK, [Score=94.7, Expect=1e-19]} {Smed: dd_Smed_v6_4849_0_2, dd_Smed_v6_4849_0_2, [Score=106, Expect=1e-23]} {RNA1509_20120} {RNA1310_1544} {RNA815_2146}
14. MligTC455_52763 595 12.4 Mlig455_020629, Mlig455_048817

Neo: Irradiation

Age: Up-Down-Up

 DLC1 0.96 - - - - 0.960 -

Mlig455_020629 {REF} {Length: 4722} {Pfam: RhoGAP domain [PF00620.29, score=111.4]; START domain [PF01852.21, score=54.0]} {Human: ENSG00000164741, DLC1, DLC1 Rho GTPase activating protein, [RH, Score=375, Expect=1e-112]; ENSG00000285265, DLC1, DLC1 Rho GTPase activating protein, [RH, Score=375, Expect=1e-112]} {Mouse: ENSMUSG00000031523, Dlc1, deleted in liver cancer 1, [RH, Score=371, Expect=3e-108]} {Dmel: FBgn0285955, cv-c, crossveinless c, [RH, Score=341, Expect=1e-97]} {Celegans: WBGene00001559, gei-1, GEX Interacting protein, [RH, Score=228, Expect=9e-61]} {Smed: dd_Smed_v6_9530_0_1, dd_Smed_v6_9530_0_1, [RH, Score=344, Expect=1e-102]} {RNA1509_29640} {RNA1310_9000} {RNA815_6507}

Mlig455_048817 {REF} {Length: 3722} {Pfam: RhoGAP domain [PF00620.29, score=111.4]; START domain [PF01852.21, score=52.4]} {Human: ENSG00000285265, DLC1, DLC1 Rho GTPase activating protein, [RH, Score=380, Expect=3e-111]; ENSG00000164741, DLC1, DLC1 Rho GTPase activating protein, [RH, Score=380, Expect=3e-111]} {Mouse: ENSMUSG00000031523, Dlc1, deleted in liver cancer 1, [RH, Score=375, Expect=1e-109]} {Dmel: FBgn0285955, cv-c, crossveinless c, [RH, Score=344, Expect=1e-98]} {Celegans: WBGene00001559, gei-1, GEX Interacting protein, [RH, Score=231, Expect=7e-62]} {Smed: dd_Smed_v6_9530_0_1, dd_Smed_v6_9530_0_1, [RH, Score=343, Expect=2e-102]} {RNA1509_29640} {RNA1310_9000} {RNA815_6507}
15. MligTC455_40289 93 1.94 Mlig455_017727, Mlig455_056175

Neo: -

Age: -

 BMP1, CUBN 0.959 - - - - 0.959 -

Mlig455_017727 {REF} {Length: 1202} {Pfam: CUB domain [PF00431.22, score=55.3]} {Human: ENSG00000107611, CUBN, cubilin, [Score=54.7, Expect=4e-08]; ENSG00000168487, BMP1, bone morphogenetic protein 1, [Score=52.0, Expect=3e-07]} {Mouse: ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=51.6, Expect=3e-07]; ENSMUSG00000022098, Bmp1, bone morphogenetic protein 1, [Score=49.7, Expect=1e-06]} {Dmel: FBgn0003719, tld, tolloid, [Score=51.2, Expect=3e-07]} {Smed: dd_Smed_v6_69474_0_1, dd_Smed_v6_69474_0_1, [Score=47.4, Expect=2e-07]} {RNA1310_48745} {RNA815_23305}

Mlig455_056175 {REF} {Length: 2747} {Pfam: CUB domain [PF00431.22, score=62.6]} {Human: ENSG00000168487, BMP1, bone morphogenetic protein 1, [Score=52.8, Expect=2e-07]; ENSG00000107611, CUBN, cubilin, [Score=51.6, Expect=4e-07]} {Mouse: ENSMUSG00000022098, Bmp1, bone morphogenetic protein 1, [Score=51.6, Expect=3e-07]; ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=49.7, Expect=1e-06]} {Dmel: FBgn0003719, tld, tolloid, [Score=51.2, Expect=3e-07]} {Smed: dd_Smed_v6_69474_0_1, dd_Smed_v6_69474_0_1, [Score=47.0, Expect=3e-07]} {RNA1310_48745} {RNA815_23305}
16. MligTC455_22762 328 6.84 Mlig455_036232

Neo: -

Age: logFC(26M/2M)=0.467

 ELOVL4 0.958 - - - - 0.958 - Mlig455_036232 {REF} {Length: 1770} {TRANSSPLICED} {Pfam: GNS1/SUR4 family [PF01151.20, score=205.6]} {Human: ENSG00000118402, ELOVL4, ELOVL fatty acid elongase 4, [RH, Score=308, Expect=2e-104]} {Mouse: ENSMUSG00000032262, Elovl4, elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4, [RH, Score=304, Expect=5e-103]} {Dmel: FBgn0052072, Elo68alpha, Elongase 68alpha, [RH, Score=214, Expect=2e-68]} {Celegans: WBGene00001245, elo-7, Elongation of very long chain fatty acids protein, [Score=81.3, Expect=1e-17]} {Smed: dd_Smed_v6_7835_0_1, dd_Smed_v6_7835_0_1, [Score=308, Expect=2e-105]} {RNA1509_11261} {RNA1310_21427.1} {RNA815_6649.1}
17. MligTC455_18891 275 5.73 Mlig455_024941

Neo: -

Age: -

Region-enriched R2: 2.016/0.02450

 0.957 - - - - 0.957 - Mlig455_024941 {REF} {Length: 394} {NoTransDecoderORF} {RNA1509_45136} {RNA1310_56753} {RNA815_28269}
18. MligTC455_27021 253 5.26 Mlig455_054758

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_054758 {REF} {Length: 754} {NoTransDecoderORF} {RNA1509_43644} {RNA1310_8032.2} {RNA815_3380.2}
19. MligTC455_52199 1032 21.49 Mlig455_031255, Mlig455_031301

Neo: -

Age: Down-Down-Up

 0.955 - - - - 0.955 -

Mlig455_031255 {REF} {Length: 1896} {Pfam: Innexin [PF00876.20, score=210.3]} {Celegans: WBGene00002127, inx-5, Innexin-5, [Score=134, Expect=1e-34]} {Smed: dd_Smed_v6_734_0_1, dd_Smed_v6_734_0_1, [Score=139, Expect=1e-36]} {RNA1509_2324} {RNA1310_13247} {RNA815_6165.1}

Mlig455_031301 {REF} {Length: 2187} {Pfam: Innexin [PF00876.20, score=210.3]} {Celegans: WBGene00002127, inx-5, Innexin-5, [Score=134, Expect=1e-34]} {Smed: dd_Smed_v6_734_0_1, dd_Smed_v6_734_0_1, [Score=139, Expect=2e-36]} {RNA1509_2324} {RNA1310_13247} {RNA815_6165.1}
20. MligTC455_16654 52 1.07 Mlig455_007810

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_007810 {REF} {Length: 302} {NoTransDecoderORF} {RNA1310_58645} {RNA815_47584}
21. MligTC455_42021 455 9.48 Mlig455_023402, Mlig455_045563

Neo: -

Age: -

 LOXHD1 0.954 - - - - 0.954 -

Mlig455_023402 {REF} {Length: 2349} {TRANSSPLICED} {Pfam: PLAT/LH2 domain [PF01477.25, score=48.7]} {Human: ENSG00000167210, LOXHD1, lipoxygenase homology domains 1, [Score=68.6, Expect=1e-11]} {Mouse: ENSMUSG00000032818, Loxhd1, lipoxygenase homology domains 1, [Score=67.8, Expect=1e-11]} {Smed: dd_Smed_v6_39713_0_1, dd_Smed_v6_39713_0_1, [Score=79.3, Expect=8e-16]} {RNA1509_24550, RNA1509_37714} {RNA1310_21907, RNA1509_24550, RNA1509_37714} {RNA1509_24550, RNA1509_37714, RNA815_9183}

Mlig455_045563 {REF} {Length: 2379} {TRANSSPLICED} {Pfam: PLAT/LH2 domain [PF01477.25, score=46.8]} {Human: ENSG00000167210, LOXHD1, lipoxygenase homology domains 1, [Score=63.5, Expect=5e-10]} {Mouse: ENSMUSG00000032818, Loxhd1, lipoxygenase homology domains 1, [Score=68.9, Expect=8e-12]} {Smed: dd_Smed_v6_39713_0_1, dd_Smed_v6_39713_0_1, [Score=76.3, Expect=1e-14]} {RNA1509_24550} {RNA1310_21907} {RNA815_9183}
22. MligTC455_15225 28 0.58 Mlig455_012698

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_012698 {REF} {Length: 1068} {NoTransDecoderORF}
23. MligTC455_45591 8 0.17 Mlig455_060244

Neo: -

Age: Up-Down-Down

 LY75 0.951 0.951 - - - - - Mlig455_060244 {REF} {Length: 1097} {Pfam: Lectin C-type domain [PF00059.23, score=113.0]; UL45 protein, carbohydrate-binding C-type lectin-like [PF05473.14, score=32.9]} {Human: ENSG00000054219, LY75, lymphocyte antigen 75, [Score=75.1, Expect=5e-14]; ENSG00000248672, LY75-CD302, LY75-CD302 readthrough, [Score=75.1, Expect=5e-14]} {Mouse: ENSMUSG00000000318, Clec10a, C-type lectin domain family 10, member A, [RH, Score=61.6, Expect=3e-10]} {RNA1509_169, RNA1509_21345} {RNA1310_579, RNA1509_21345} {RNA1509_21345, RNA815_112.1}
24. MligTC455_54351 24 0.49 Mlig455_008965

Neo: -

Age: -

 PLAC8 0.951 - - - - 0.951 - Mlig455_008965 {REF} {Length: 1016} {Pfam: PLAC8 family [PF04749.19, score=73.9]} {Human: ENSG00000145287, PLAC8, placenta specific 8, [Score=53.1, Expect=7e-10]} {Smed: dd_Smed_v6_477_0_1, dd_Smed_v6_477_0_1, [RH, Score=127, Expect=2e-39]} {RNA1509_49668} {RNA1310_34433} {RNA815_23736}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA