M. lignano Tomo-Seq
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Results for MligTC455_17062

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17062 1374 28.62 Mlig455_058341

Neo: Int S/G2/M

Age: -

 ALKBH4 Mlig455_058341 {REF} {Length: 1506} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF03171.22, score=27.6]; 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=24.8]} {Human: ENSG00000160993, ALKBH4, alkB homolog 4, lysine demethylase, [RH, Score=191, Expect=9e-59]} {Mouse: ENSMUSG00000039754, Alkbh4, alkB homolog 4, lysine demethylase, [RH, Score=202, Expect=2e-63]} {Dmel: FBgn0032149, CG4036, [RH, Score=179, Expect=2e-54]} {Celegans: WBGene00017304, F09F7.7, DNA N6-methyl adenine demethylase, [RH, Score=182, Expect=4e-56]} {Smed: dd_Smed_v6_4775_0_1, dd_Smed_v6_4775_0_1, [RH, Score=189, Expect=6e-59]} {RNA1509_50359, RNA1509_5872} {RNA1310_21157.1, RNA1509_50359, RNA1509_5872} {RNA1509_50359, RNA1509_5872, RNA815_8828.1}

Cumulative graph for MligTC455_17062

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.414 4.989 0.60074 1.00000
RegionR2 0.313 4.989 0.47871 0.86313
RegionR3 0.419 4.989 0.22644 0.76811
RegionR4 -0.225 4.989 0.57107 0.88922
RegionR5 0.358 4.989 0.25604 0.57445
RegionR6 0.359 4.989 0.29410 0.88577
RegionR7 -0.426 4.989 0.34724 0.98429
RegionR8 -0.382 4.989 0.48285 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.941 4.989 0.35332 1.00000
RegenerationR2 0.321 4.989 0.42664 0.83205
RegenerationR3 -0.325 4.989 0.45826 0.83689
RegenerationR4 0.225 4.989 0.60822 0.91664
RegenerationR5 -0.212 4.989 0.60623 0.91247
RegenerationR6 0.376 4.989 0.37729 0.71903
RegenerationBL 0.981 4.989 0.03022 0.19386
RegenerationTP 0.871 4.989 0.08189 0.45414


Genes with expression patterns similar to MligTC455_17062

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17062 1374 28.62 Mlig455_058341

Neo: Int S/G2/M

Age: -

 ALKBH4 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_058341 {REF} {Length: 1506} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF03171.22, score=27.6]; 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=24.8]} {Human: ENSG00000160993, ALKBH4, alkB homolog 4, lysine demethylase, [RH, Score=191, Expect=9e-59]} {Mouse: ENSMUSG00000039754, Alkbh4, alkB homolog 4, lysine demethylase, [RH, Score=202, Expect=2e-63]} {Dmel: FBgn0032149, CG4036, [RH, Score=179, Expect=2e-54]} {Celegans: WBGene00017304, F09F7.7, DNA N6-methyl adenine demethylase, [RH, Score=182, Expect=4e-56]} {Smed: dd_Smed_v6_4775_0_1, dd_Smed_v6_4775_0_1, [RH, Score=189, Expect=6e-59]} {RNA1509_50359, RNA1509_5872} {RNA1310_21157.1, RNA1509_50359, RNA1509_5872} {RNA1509_50359, RNA1509_5872, RNA815_8828.1}
2. MligTC455_44061 1563 32.56 Mlig455_020150

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.326

 RBM15B 2.451 - - 0.763 0.953 - 0.735 Mlig455_020150 {REF} {Length: 2624} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=69.0]; SPOC domain [PF07744.15, score=50.6]; RNA recognition motif [PF16367.7, score=25.8]} {Human: ENSG00000259956, RBM15B, RNA binding motif protein 15B, [RH, Score=146, Expect=1e-35]; ENSG00000162775, RBM15, RNA binding motif protein 15, [RH, Score=142, Expect=3e-34]} {Mouse: ENSMUSG00000074102, Rbm15b, RNA binding motif protein 15B, [RH, Score=147, Expect=6e-36]; ENSMUSG00000048109, Rbm15, RNA binding motif protein 15, [RH, Score=142, Expect=2e-34]} {Dmel: FBgn0027548, nito, spenito, [RH, Score=151, Expect=2e-37]} {Celegans: WBGene00017929, grld-1, Glutamate Receptor Level Decreased, [RH, Score=142, Expect=3e-36]} {Smed: dd_Smed_v6_7282_0_1, dd_Smed_v6_7282_0_1, [RH, Score=223, Expect=2e-63]} {RNA1509_27794, RNA1509_34223, RNA1509_60106, RNA1509_6733} {RNA1310_8176.1, RNA1509_27794, RNA1509_34223, RNA1509_60106, RNA1509_6733} {RNA1509_27794, RNA1509_34223, RNA1509_60106, RNA1509_6733, RNA815_25048}
3. MligTC455_22947 4525 94.27 Mlig455_000666

Neo: -

Age: -

 PSMD7 1.754 - 0.801 - 0.953 - - Mlig455_000666 {REF} {Length: 1603} {TRANSSPLICED} {Pfam: Maintenance of mitochondrial structure and function [PF13012.8, score=108.4]; JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=98.4]} {Human: ENSG00000103035, PSMD7, proteasome 26S subunit, non-ATPase 7, [RH, Score=374, Expect=4e-129]} {Mouse: ENSMUSG00000039067, Psmd7, proteasome (prosome, macropain) 26S subunit, non-ATPase, 7, [RH, Score=373, Expect=4e-129]} {Dmel: FBgn0002787, Rpn8, Regulatory particle non-ATPase 8, [RH, Score=370, Expect=7e-128]} {Celegans: WBGene00004464, rpn-8, Proteasome Regulatory Particle, Non-ATPase-like, [RH, Score=335, Expect=7e-114]} {Smed: dd_Smed_v6_52996_0_1, dd_Smed_v6_52996_0_1, [RH, Score=379, Expect=3e-132]} {RNA1509_2036, RNA1509_6448} {RNA1310_19847, RNA1509_2036, RNA1509_6448} {RNA1509_2036, RNA1509_6448, RNA815_8101}
4. MligTC455_42660 443 9.23 Mlig455_017230

Neo: -

Age: logFC(26M/2M)=0.453

 0.963 - - - 0.963 - - Mlig455_017230 {REF} {Length: 1949} {RNA1509_18178} {RNA1310_33346, RNA1509_18178} {RNA1509_18178, RNA815_55939}
5. MligTC455_41161 1723 35.89 Mlig455_015003, Mlig455_038650

Neo: -

Age: -

Regeneration-upregulated R6: 1.721

Regeneration-enriched R6: 1.721

 RBBP6 0.959 - - - 0.959 - -

Mlig455_015003 {REF} {Length: 3795} {TRANSSPLICED} {Pfam: DWNN domain [PF08783.13, score=49.8]; U-box domain [PF04564.17, score=27.2]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=20.9]; Ring finger domain [PF13639.8, score=20.2]} {Human: ENSG00000122257, RBBP6, RB binding protein 6, ubiquitin ligase, [Score=78.2, Expect=7e-14]} {Mouse: ENSMUSG00000030779, Rbbp6, retinoblastoma binding protein 6, ubiquitin ligase, [Score=78.2, Expect=5e-14]} {Dmel: FBgn0086129, snama, something that sticks like glue, [Score=96.3, Expect=9e-20]} {Celegans: WBGene00009477, rbpl-1, Retinoblastoma Binding Protein Like, [Score=61.6, Expect=3e-09]} {Smed: dd_Smed_v6_6556_0_1, dd_Smed_v6_6556_0_1, [Score=80.1, Expect=3e-15]} {RNA1509_48313, RNA1509_5537} {RNA1310_2775, RNA1509_48313} {RNA1509_48313, RNA815_5708}

Mlig455_038650 {REF} {Length: 3834} {TRANSSPLICED} {Pfam: DWNN domain [PF08783.13, score=49.8]; U-box domain [PF04564.17, score=28.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.8]; Ring finger domain [PF13639.8, score=21.3]} {Human: ENSG00000122257, RBBP6, RB binding protein 6, ubiquitin ligase, [Score=80.9, Expect=1e-14]} {Mouse: ENSMUSG00000030779, Rbbp6, retinoblastoma binding protein 6, ubiquitin ligase, [Score=80.5, Expect=9e-15]} {Dmel: FBgn0086129, snama, something that sticks like glue, [Score=91.3, Expect=3e-18]} {Celegans: WBGene00009477, rbpl-1, Retinoblastoma Binding Protein Like, [Score=62.0, Expect=2e-09]} {Smed: dd_Smed_v6_6556_0_1, dd_Smed_v6_6556_0_1, [RH, Score=85.9, Expect=4e-17]} {RNA1509_5537} {RNA1310_2775} {RNA815_5708}

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