M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17159

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17159 2586 53.87 Mlig455_045117

Neo: Int S/G2/M

Age: -

 SEPT6 Mlig455_045117 {REF} {Length: 2099} {Pfam: Septin [PF00735.20, score=326.6]; 50S ribosome-binding GTPase [PF01926.25, score=23.6]; AAA domain [PF13401.8, score=20.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=18.9]} {Human: ENSG00000125354, SEPT6, septin 6, [RH, Score=512, Expect=0.0]; ENSG00000186522, SEPT10, septin 10, [RH, Score=500, Expect=3e-176]; ENSG00000164402, SEPT8, septin 8, [RH, Score=498, Expect=2e-175]; ENSG00000138758, SEPT11, septin 11, [RH, Score=488, Expect=2e-172]} {Mouse: ENSMUSG00000050379, Sept6, septin 6, [RH, Score=516, Expect=0.0]; ENSMUSG00000019917, Sept10, septin 10, [RH, Score=509, Expect=1e-179]; ENSMUSG00000018398, Sept8, septin 8, [RH, Score=495, Expect=7e-174]} {Dmel: FBgn0014029, Sep2, Septin 2, [RH, Score=547, Expect=0.0]} {Celegans: WBGene00006795, unc-61, [RH, Score=397, Expect=6e-135]} {Smed: dd_Smed_v6_1509_0_1, dd_Smed_v6_1509_0_1, [RH, Score=569, Expect=0.0]} {RNA1509_16022, RNA1509_5043, RNA1509_51814, RNA1509_53740, RNA1509_55107, RNA1509_59053} {RNA1310_10981.1, RNA1509_16022, RNA1509_5043, RNA1509_51814, RNA1509_53740, RNA1509_55107, RNA1509_59053} {RNA1509_16022, RNA1509_5043, RNA1509_51814, RNA1509_53740, RNA1509_55107, RNA1509_59053, RNA815_3825.1}

Cumulative graph for MligTC455_17159

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.314 5.824 0.65844 1.00000
RegionR2 -0.332 5.824 0.32560 0.71761
RegionR3 -0.54 5.824 0.06503 0.45005
RegionR4 0.402 5.824 0.22521 0.51665
RegionR5 0.076 5.824 0.77166 1.00000
RegionR6 0.026 5.824 0.92652 1.00000
RegionR7 0.335 5.824 0.31272 0.94708
RegionR8 0.348 5.824 0.39938 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.178 5.824 0.14020 0.87672
RegenerationR2 0.28 5.824 0.36937 0.79517
RegenerationR3 0.503 5.824 0.13935 0.56533
RegenerationR4 -0.072 5.824 0.83212 0.99786
RegenerationR5 0.385 5.824 0.22380 0.65813
RegenerationR6 1.035 5.824 0.00162 0.04476
RegenerationBL 0.774 5.824 0.01580 0.13272
RegenerationTP 0.21 5.824 0.56190 0.93966


Genes with expression patterns similar to MligTC455_17159

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17159 2586 53.87 Mlig455_045117

Neo: Int S/G2/M

Age: -

 SEPT6 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_045117 {REF} {Length: 2099} {Pfam: Septin [PF00735.20, score=326.6]; 50S ribosome-binding GTPase [PF01926.25, score=23.6]; AAA domain [PF13401.8, score=20.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=18.9]} {Human: ENSG00000125354, SEPT6, septin 6, [RH, Score=512, Expect=0.0]; ENSG00000186522, SEPT10, septin 10, [RH, Score=500, Expect=3e-176]; ENSG00000164402, SEPT8, septin 8, [RH, Score=498, Expect=2e-175]; ENSG00000138758, SEPT11, septin 11, [RH, Score=488, Expect=2e-172]} {Mouse: ENSMUSG00000050379, Sept6, septin 6, [RH, Score=516, Expect=0.0]; ENSMUSG00000019917, Sept10, septin 10, [RH, Score=509, Expect=1e-179]; ENSMUSG00000018398, Sept8, septin 8, [RH, Score=495, Expect=7e-174]} {Dmel: FBgn0014029, Sep2, Septin 2, [RH, Score=547, Expect=0.0]} {Celegans: WBGene00006795, unc-61, [RH, Score=397, Expect=6e-135]} {Smed: dd_Smed_v6_1509_0_1, dd_Smed_v6_1509_0_1, [RH, Score=569, Expect=0.0]} {RNA1509_16022, RNA1509_5043, RNA1509_51814, RNA1509_53740, RNA1509_55107, RNA1509_59053} {RNA1310_10981.1, RNA1509_16022, RNA1509_5043, RNA1509_51814, RNA1509_53740, RNA1509_55107, RNA1509_59053} {RNA1509_16022, RNA1509_5043, RNA1509_51814, RNA1509_53740, RNA1509_55107, RNA1509_59053, RNA815_3825.1}
2. MligTC455_32979 729 15.18 Mlig455_007480

Neo: Irradiation

Age: -

Region-enriched R4: 1.619/0.01496

 MTA1 0.968 - - - - 0.968 - Mlig455_007480 {REF} {Length: 3887} {Pfam: BAH domain [PF01426.20, score=97.0]; ELM2 domain [PF01448.26, score=53.4]; MTA R1 domain [PF17226.4, score=19.7]} {Human: ENSG00000182979, MTA1, metastasis associated 1, [RH, Score=549, Expect=0.0]} {Mouse: ENSMUSG00000055817, Mta3, metastasis associated 3, [RH, Score=551, Expect=0.0]; ENSMUSG00000021144, Mta1, metastasis associated 1, [RH, Score=551, Expect=0.0]} {Dmel: FBgn0027951, MTA1-like, Metastasis associated 1-like, [Score=519, Expect=5e-173]} {Celegans: WBGene00003025, lin-40, [RH, Score=291, Expect=4e-85]} {Smed: dd_Smed_v6_5860_0_1, dd_Smed_v6_5860_0_1, [RH, Score=455, Expect=1e-150]} {RNA1509_31045, RNA1509_53593} {RNA1310_5893, RNA1509_53593} {RNA1509_53593, RNA815_2359.1}
3. MligTC455_50175 681 14.19 Mlig455_049630

Neo: -

Age: -

 TEX261 0.953 - - - - 0.953 - Mlig455_049630 {REF} {Length: 2273} {TRANSSPLICED} {Pfam: Transmembrane adaptor Erv26 [PF04148.15, score=124.9]} {Human: ENSG00000144043, TEX261, testis expressed 261, [Score=150, Expect=3e-45]} {Mouse: ENSMUSG00000014748, Tex261, testis expressed gene 261, [Score=150, Expect=1e-45]} {Dmel: FBgn0034849, CG3500, [Score=119, Expect=2e-33]} {Smed: dd_Smed_v6_10021_0_1, dd_Smed_v6_10021_0_1, [Score=117, Expect=1e-32]} {RNA1509_45542} {RNA1310_11823, RNA1509_45542} {RNA1509_45542, RNA815_17541.1}
4. MligTC455_49655 957 19.94 Mlig455_002453, Mlig455_002720

Neo: -

Age: logFC(26M/2M)=0.337

Regeneration-upregulated BL: 1.810

Regeneration-enriched BL: 1.810

 UAP1 0.951 - - 0.951 - - -

Mlig455_002453 {REF} {Length: 2391} {TRANSSPLICED} {Pfam: UTP--glucose-1-phosphate uridylyltransferase [PF01704.20, score=131.3]} {Human: ENSG00000117143, UAP1, UDP-N-acetylglucosamine pyrophosphorylase 1, [Score=327, Expect=2e-106]; ENSG00000197355, UAP1L1, UDP-N-acetylglucosamine pyrophosphorylase 1 like 1, [Score=315, Expect=1e-101]} {Mouse: ENSMUSG00000026670, Uap1, UDP-N-acetylglucosamine pyrophosphorylase 1, [Score=339, Expect=3e-111]} {Dmel: FBgn0259749, mmy, mummy, [RH, Score=349, Expect=6e-115]} {Celegans: WBGene00007965, C36A4.4, Probable UDP-N-acetylglucosamine pyrophosphorylase, [RH, Score=239, Expect=4e-73]} {Smed: dd_Smed_v6_2150_1_1, dd_Smed_v6_2150_1_1, [Score=343, Expect=4e-113]} {RNA1509_18328} {RNA1310_8742, RNA1509_18328} {RNA1509_18328, RNA815_10366}

Mlig455_002720 {REF} {Length: 2405} {Pfam: UTP--glucose-1-phosphate uridylyltransferase [PF01704.20, score=131.3]} {Human: ENSG00000117143, UAP1, UDP-N-acetylglucosamine pyrophosphorylase 1, [Score=327, Expect=2e-106]; ENSG00000197355, UAP1L1, UDP-N-acetylglucosamine pyrophosphorylase 1 like 1, [Score=313, Expect=7e-101]} {Mouse: ENSMUSG00000026670, Uap1, UDP-N-acetylglucosamine pyrophosphorylase 1, [Score=340, Expect=2e-111]} {Dmel: FBgn0259749, mmy, mummy, [Score=348, Expect=2e-115]} {Celegans: WBGene00007965, C36A4.4, Probable UDP-N-acetylglucosamine pyrophosphorylase, [Score=237, Expect=2e-72]} {Smed: dd_Smed_v6_2150_1_1, dd_Smed_v6_2150_1_1, [Score=348, Expect=2e-115]} {RNA1509_18328} {RNA1310_8742} {RNA815_10366}
5. MligTC455_51505 806 16.78 Mlig455_030147

Neo: -

Age: logFC(26M/2M)=-0.256

 DTX3L 0.951 - - 0.951 - - - Mlig455_030147 {REF} {Length: 3045} {Pfam: Deltex C-terminal domain [PF18102.3, score=135.2]} {Human: ENSG00000163840, DTX3L, deltex E3 ubiquitin ligase 3L, [Score=128, Expect=4e-30]; ENSG00000178498, DTX3, deltex E3 ubiquitin ligase 3, [Score=128, Expect=7e-32]} {Mouse: ENSMUSG00000040415, Dtx3, deltex 3, E3 ubiquitin ligase, [Score=129, Expect=2e-32]; ENSMUSG00000049502, Dtx3l, deltex 3-like, E3 ubiquitin ligase, [Score=129, Expect=1e-30]} {Dmel: FBgn0000524, dx, deltex, [Score=79.0, Expect=7e-15]} {RNA1509_27510, RNA1509_5594} {RNA1310_5119.1, RNA1509_27510, RNA1509_5594} {RNA1509_27510, RNA1509_5594, RNA815_4008}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA