M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17402

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17402 1446 30.13 Mlig455_002513

Neo: -

Age: Down-Down-Up

 CNTNAP2 Mlig455_002513 {REF} {Length: 5370} {Pfam: Laminin G domain [PF02210.26, score=232.5]; Laminin G domain [PF00054.25, score=158.1]; F5/8 type C domain [PF00754.27, score=91.2]; EGF-like domain [PF00008.29, score=21.5]} {Human: ENSG00000174469, CNTNAP2, contactin associated protein like 2, [RH, Score=552, Expect=5e-173]; ENSG00000155052, CNTNAP5, contactin associated protein like 5, [RH, Score=529, Expect=2e-164]} {Mouse: ENSMUSG00000039419, Cntnap2, contactin associated protein-like 2, [RH, Score=533, Expect=8e-166]} {Dmel: FBgn0013997, Nrx-IV, Neurexin IV, [RH, Score=682, Expect=0.0]} {Celegans: WBGene00003772, nlr-1, Neurexin Like receptor, [RH, Score=252, Expect=2e-68]} {Smed: dd_Smed_v6_2622_0_1, dd_Smed_v6_2622_0_1, [RH, Score=1056, Expect=0.0]} {RNA1509_1218, RNA1509_4451, RNA1509_54102} {RNA1310_686.2, RNA1509_1218, RNA1509_4451, RNA1509_54102} {RNA1509_1218, RNA1509_4451, RNA1509_54102, RNA815_263}

Cumulative graph for MligTC455_17402

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.109 5.04 0.32042 0.96943
RegionR2 -0.233 5.04 0.57112 0.93083
RegionR3 -0.364 5.04 0.31182 0.85111
RegionR4 0.882 5.04 0.03700 0.15739
RegionR5 0.103 5.04 0.75218 1.00000
RegionR6 -0.128 5.04 0.71700 1.00000
RegionR7 0.268 5.04 0.49520 1.00000
RegionR8 0.58 5.04 0.18342 0.76958

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.905 5.04 0.53313 1.00000
RegenerationR2 0.342 5.04 0.31936 0.75774
RegenerationR3 -0.008 5.04 0.98265 1.00000
RegenerationR4 -0.837 5.04 0.04049 0.32421
RegenerationR5 -0.204 5.04 0.58374 0.90212
RegenerationR6 0.169 5.04 0.66669 0.90694
RegenerationBL 0.273 5.04 0.48012 0.84541
RegenerationTP -0.46 5.04 0.28250 0.73007


Genes with expression patterns similar to MligTC455_17402

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17402 1446 30.13 Mlig455_002513

Neo: -

Age: Down-Down-Up

 CNTNAP2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_002513 {REF} {Length: 5370} {Pfam: Laminin G domain [PF02210.26, score=232.5]; Laminin G domain [PF00054.25, score=158.1]; F5/8 type C domain [PF00754.27, score=91.2]; EGF-like domain [PF00008.29, score=21.5]} {Human: ENSG00000174469, CNTNAP2, contactin associated protein like 2, [RH, Score=552, Expect=5e-173]; ENSG00000155052, CNTNAP5, contactin associated protein like 5, [RH, Score=529, Expect=2e-164]} {Mouse: ENSMUSG00000039419, Cntnap2, contactin associated protein-like 2, [RH, Score=533, Expect=8e-166]} {Dmel: FBgn0013997, Nrx-IV, Neurexin IV, [RH, Score=682, Expect=0.0]} {Celegans: WBGene00003772, nlr-1, Neurexin Like receptor, [RH, Score=252, Expect=2e-68]} {Smed: dd_Smed_v6_2622_0_1, dd_Smed_v6_2622_0_1, [RH, Score=1056, Expect=0.0]} {RNA1509_1218, RNA1509_4451, RNA1509_54102} {RNA1310_686.2, RNA1509_1218, RNA1509_4451, RNA1509_54102} {RNA1509_1218, RNA1509_4451, RNA1509_54102, RNA815_263}
2. MligTC455_17403 1493 31.11 Mlig455_002656

Neo: -

Age: -

 CNTNAP2 5.827 0.940 0.992 0.995 0.987 0.942 0.971 Mlig455_002656 {REF} {Length: 5560} {Pfam: Laminin G domain [PF02210.26, score=234.4]; Laminin G domain [PF00054.25, score=159.1]; F5/8 type C domain [PF00754.27, score=91.2]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=28.2]; EGF-like domain [PF00008.29, score=21.5]} {Human: ENSG00000174469, CNTNAP2, contactin associated protein like 2, [RH, Score=553, Expect=2e-173]; ENSG00000155052, CNTNAP5, contactin associated protein like 5, [RH, Score=530, Expect=5e-165]} {Mouse: ENSMUSG00000039419, Cntnap2, contactin associated protein-like 2, [RH, Score=533, Expect=3e-166]} {Dmel: FBgn0013997, Nrx-IV, Neurexin IV, [RH, Score=684, Expect=0.0]} {Celegans: WBGene00003772, nlr-1, Neurexin Like receptor, [RH, Score=253, Expect=1e-68]} {Smed: dd_Smed_v6_2622_0_1, dd_Smed_v6_2622_0_1, [RH, Score=1056, Expect=0.0]} {RNA1509_4451} {RNA1310_686.2} {RNA815_263}
3. MligTC455_42633 6342 132.12 Mlig455_057492

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.203

Regeneration-upregulated BL: 1.057

Regeneration-enriched BL: 1.057

 ATP1A2 2.531 - - 0.766 0.951 0.814 - Mlig455_057492 {REF} {Length: 3667} {Pfam: E1-E2 ATPase [PF00122.22, score=151.4]; Cation transporting ATPase, C-terminus [PF00689.23, score=144.1]; Cation transport ATPase (P-type) [PF13246.8, score=78.1]; haloacid dehalogenase-like hydrolase [PF00702.28, score=72.7]; Cation transporter/ATPase, N-terminus [PF00690.28, score=59.0]; haloacid dehalogenase-like hydrolase [PF08282.14, score=25.8]} {Human: ENSG00000018625, ATP1A2, ATPase Na+/K+ transporting subunit alpha 2, [RH, Score=1508, Expect=0.0]; ENSG00000163399, ATP1A1, ATPase Na+/K+ transporting subunit alpha 1, [RH, Score=1504, Expect=0.0]; ENSG00000105409, ATP1A3, ATPase Na+/K+ transporting subunit alpha 3, [RH, Score=1497, Expect=0.0]; ENSG00000285505, AC010616.2, novel protein, ATP1A3-RABAC1 readthrough, [RH, Score=1483, Expect=0.0]} {Mouse: ENSMUSG00000007097, Atp1a2, ATPase, Na+/K+ transporting, alpha 2 polypeptide, [RH, Score=1503, Expect=0.0]; ENSMUSG00000040907, Atp1a3, ATPase, Na+/K+ transporting, alpha 3 polypeptide, [RH, Score=1496, Expect=0.0]; ENSMUSG00000033161, Atp1a1, ATPase, Na+/K+ transporting, alpha 1 polypeptide, [RH, Score=1492, Expect=0.0]} {Dmel: FBgn0002921, Atpalpha, Na pump alpha subunit, [RH, Score=1560, Expect=0.0]} {Celegans: WBGene00001137, eat-6, Sodium/potassium-transporting ATPase subunit alpha, [RH, Score=1483, Expect=0.0]} {Smed: dd_Smed_v6_1179_0_1, dd_Smed_v6_1179_0_1, [RH, Score=1657, Expect=0.0]} {RNA1509_12697, RNA1509_22100, RNA1509_22212, RNA1509_990} {RNA1310_3228.1, RNA1509_12697, RNA1509_22100, RNA1509_22212, RNA1509_990} {RNA1509_12697, RNA1509_22100, RNA1509_22212, RNA1509_990, RNA815_592.2}
4. MligTC455_20264 3839 79.98 Mlig455_004009, Mlig455_004093

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.975

 ANK3 1.78 - - - 0.958 0.822 -

Mlig455_004009 {REF} {Length: 4291} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=118.9]; Ankyrin repeat [PF00023.32, score=98.7]; Ankyrin repeats (many copies) [PF13637.8, score=90.0]; Ankyrin repeats (many copies) [PF13857.8, score=84.8]; Ankyrin repeat [PF13606.8, score=73.4]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=127, Expect=7e-29]; ENSG00000145362, ANK2, ankyrin 2, [Score=125, Expect=3e-28]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=124, Expect=5e-28]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=121, Expect=3e-27]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=121, Expect=3e-27]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=119, Expect=9e-27]} {Smed: dd_Smed_v6_2072_0_20, dd_Smed_v6_2072_0_20, [Score=119, Expect=7e-27]} {RNA1509_9109} {RNA1310_24854.1} {RNA815_11486}

Mlig455_004093 {REF} {Length: 4136} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=119.2]; Ankyrin repeat [PF00023.32, score=99.2]; Ankyrin repeats (many copies) [PF13637.8, score=90.2]; Ankyrin repeats (many copies) [PF13857.8, score=85.3]; Ankyrin repeat [PF13606.8, score=73.9]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=127, Expect=7e-29]; ENSG00000145362, ANK2, ankyrin 2, [Score=125, Expect=3e-28]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=123, Expect=7e-28]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=121, Expect=2e-27]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=120, Expect=5e-27]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=118, Expect=2e-26]} {Smed: dd_Smed_v6_2072_0_26, dd_Smed_v6_2072_0_26, [Score=119, Expect=6e-27]} {RNA1509_9109} {RNA1310_24854.1} {RNA815_11486}
5. MligTC455_42634 4044 84.26 Mlig455_070344

Neo: -

Age: Down-Up-Down

Regeneration-upregulated BL: 1.425

Regeneration-enriched BL: 1.425

 ATP1A2 1.765 - - - 0.960 0.805 - Mlig455_070344 {REF} {Length: 3621} {Pfam: E1-E2 ATPase [PF00122.22, score=151.4]; Cation transporting ATPase, C-terminus [PF00689.23, score=144.1]; Cation transport ATPase (P-type) [PF13246.8, score=78.1]; haloacid dehalogenase-like hydrolase [PF00702.28, score=72.7]; Cation transporter/ATPase, N-terminus [PF00690.28, score=59.0]; haloacid dehalogenase-like hydrolase [PF08282.14, score=25.8]} {Human: ENSG00000018625, ATP1A2, ATPase Na+/K+ transporting subunit alpha 2, [RH, Score=1508, Expect=0.0]; ENSG00000163399, ATP1A1, ATPase Na+/K+ transporting subunit alpha 1, [RH, Score=1505, Expect=0.0]; ENSG00000105409, ATP1A3, ATPase Na+/K+ transporting subunit alpha 3, [RH, Score=1497, Expect=0.0]; ENSG00000285505, AC010616.2, novel protein, ATP1A3-RABAC1 readthrough, [RH, Score=1483, Expect=0.0]} {Mouse: ENSMUSG00000007097, Atp1a2, ATPase, Na+/K+ transporting, alpha 2 polypeptide, [RH, Score=1502, Expect=0.0]; ENSMUSG00000040907, Atp1a3, ATPase, Na+/K+ transporting, alpha 3 polypeptide, [RH, Score=1495, Expect=0.0]; ENSMUSG00000033161, Atp1a1, ATPase, Na+/K+ transporting, alpha 1 polypeptide, [RH, Score=1491, Expect=0.0]} {Dmel: FBgn0002921, Atpalpha, Na pump alpha subunit, [RH, Score=1560, Expect=0.0]} {Celegans: WBGene00001137, eat-6, Sodium/potassium-transporting ATPase subunit alpha, [RH, Score=1483, Expect=0.0]} {Smed: dd_Smed_v6_1179_0_1, dd_Smed_v6_1179_0_1, [RH, Score=1654, Expect=0.0]} {RNA1509_990} {RNA1310_3228.1} {RNA815_592.2}
6. MligTC455_45672 743 15.49 Mlig455_034867

Neo: -

Age: -

Region-enriched R4: 1.237/0.02291

 TMEM80 0.964 - - 0.964 - - - Mlig455_034867 {REF} {Length: 1153} {TRANSSPLICED} {Pfam: Predicted membrane protein [PF09799.11, score=79.4]} {Human: ENSG00000177042, TMEM80, transmembrane protein 80, [RH, Score=53.9, Expect=1e-08]} {Celegans: WBGene00194710, mks-2, MecKel-Gruber Syndrome (MKS) homolog, [RH, Score=49.7, Expect=6e-08]} {Smed: dd_Smed_v6_14636_0_1, dd_Smed_v6_14636_0_1, [Score=73.6, Expect=5e-17]} {RNA1509_35137, RNA1509_36429, RNA1509_39419} {RNA1310_30722.1, RNA1509_36429, RNA1509_39419} {RNA1509_36429, RNA1509_39419, RNA815_13266}
7. MligTC455_49921 1426 29.71 Mlig455_032025

Neo: -

Age: Down-Up-Up

Region-enriched R2: 1.301/0.00737

 0.957 - - 0.957 - - - Mlig455_032025 {REF} {Length: 1799} {TRANSSPLICED} {Pfam: Universal stress protein family [PF00582.28, score=84.8]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [RH, Score=144, Expect=3e-44]} {RNA1509_16448, RNA1509_17596, RNA1509_35928, RNA1509_44644, RNA1509_49937, RNA1509_52376, RNA1509_56497, RNA1509_7845} {RNA1310_16500, RNA1509_16448, RNA1509_17596, RNA1509_35928, RNA1509_44644, RNA1509_49937, RNA1509_52376, RNA1509_56497, RNA1509_7845} {RNA1509_16448, RNA1509_17596, RNA1509_35928, RNA1509_44644, RNA1509_49937, RNA1509_52376, RNA1509_56497, RNA1509_7845, RNA815_25483}
8. MligTC455_50104 1791 37.32 Mlig455_042984, Mlig455_043017

Neo: -

Age: -

 0.957 - - 0.957 - - -

Mlig455_042984 {REF} {Length: 63} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_35523} {RNA1310_62829} {RNA815_46239}

Mlig455_043017 {REF} {Length: 74} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_29538} {RNA1310_62829} {RNA815_46239}
9. MligTC455_30672 1486 30.96 Mlig455_039627

Neo: -

Age: logFC(26M/2M)=-0.336

 0.955 - - 0.955 - - - Mlig455_039627 {REF} {Length: 4991} {TRANSSPLICED} {Pfam: TMEM154 protein family [PF15102.8, score=21.9]; Family of unknown function (DUF5305) [PF17231.4, score=21.2]; Domain of unknown function (DUF3377) [PF11857.10, score=21.1]} {RNA1509_15005, RNA1509_23948, RNA1509_33625, RNA1509_41258, RNA1509_8814} {RNA1310_5516.1, RNA1509_15005, RNA1509_23948, RNA1509_33625, RNA1509_41258, RNA1509_8814} {RNA1509_15005, RNA1509_23948, RNA1509_33625, RNA1509_41258, RNA1509_8814, RNA815_2563.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA