M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17461

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17461 113 2.36 Mlig455_003687

Neo: -

Age: -

 Mlig455_003687 {REF} {Length: 1115} {NoTransDecoderORF} {RNA1509_27979} {RNA1310_21032.1} {RNA815_18608}

Cumulative graph for MligTC455_17461

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.447 2.258 0.66556 1.00000
RegionR2 1.38 2.258 0.29816 0.68685
RegionR3 2.825 2.258 0.00257 0.05995
RegionR4 0.714 2.258 0.48691 0.81446
RegionR5 1.076 2.258 0.25000 0.56595
RegionR6 1.5 2.258 0.16534 0.71989
RegionR7 -3.934 2.258 1.00000 1.00000
RegionR8 -4.008 2.258 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.916 2.258 0.82745 1.00000
RegenerationR2 1.914 2.258 0.08345 0.46408
RegenerationR3 0.549 2.258 0.51416 0.86411
RegenerationR4 1.57 2.258 0.18235 0.62303
RegenerationR5 0.911 2.258 0.28923 0.71721
RegenerationR6 -1.378 2.258 0.34257 0.68817
RegenerationBL 5.29 2.258 0.00796 0.08745
RegenerationTP 6.176 2.258 0.01139 0.18143


Genes with expression patterns similar to MligTC455_17461

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17461 113 2.36 Mlig455_003687

Neo: -

Age: -

 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_003687 {REF} {Length: 1115} {NoTransDecoderORF} {RNA1509_27979} {RNA1310_21032.1} {RNA815_18608}
2. MligTC455_51192 305 6.35 Mlig455_065957

Neo: -

Age: Up-Down-Up

Region-enriched R3: 2.100/0.00201

 1.743 0.789 - - - - 0.954 Mlig455_065957 {REF} {Length: 2609} {Pfam: Innexin [PF00876.20, score=323.9]} {Dmel: FBgn0027108, Inx2, Innexin 2, [Score=88.6, Expect=5e-19]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=261, Expect=5e-84]} {Smed: dd_Smed_v6_734_0_1, dd_Smed_v6_734_0_1, [Score=273, Expect=3e-88]} {RNA1509_22191, RNA1509_47818} {RNA1310_9582, RNA1509_47818} {RNA1509_47818, RNA815_10664}
3. MligTC455_21296 1364 28.43 Mlig455_038699

Neo: Germline

Age: -

Region-specific R4: 4.483
Region-specific R1: 3.474

Region-enriched R4: 2.386/0.00000

Regeneration-downregulated R4: -2.269

Regeneration-depleted R4: -2.269

 0.985 - - - 0.985 - - Mlig455_038699 {REF} {Length: 1131} {TRANSSPLICED} {RNA1509_19342, RNA1509_23653, RNA1509_37261, RNA1509_4702, RNA1509_5236} {RNA1310_31717, RNA1509_19342, RNA1509_23653, RNA1509_37261, RNA1509_4702, RNA1509_5236} {RNA1509_19342, RNA1509_23653, RNA1509_37261, RNA1509_4702, RNA1509_5236, RNA815_13757}
4. MligTC455_04596 69 1.43 Mlig455_030686

Neo: -

Age: Up-Down-Up

 0.972 - - - - - 0.972 Mlig455_030686 {REF} {Length: 1197} {Pfam: NIPSNAP [PF07978.15, score=75.2]} {Mouse: ENSMUSG00000015247, Nipsnap3b, nipsnap homolog 3B, [RH, Score=73.9, Expect=1e-15]} {RNA1509_38571} {RNA1310_21189.1} {RNA815_13886}
5. MligTC455_19026 335 6.98 Mlig455_033351

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.452

Region-specific R4: 5.419

Region-enriched R4: 2.838/0.00001

 0.963 - - - 0.963 - - Mlig455_033351 {REF} {Length: 2251} {RNA1509_6632} {RNA1310_26187.1} {RNA815_3899.2}
6. MligTC455_24018 148 3.09 Mlig455_041905

Neo: Germline

Age: logFC(26M/2M)=0.414

Region-specific R4: 6.042

Region-enriched R4: 2.680/0.01251

 DYSF 0.957 - - - 0.957 - - Mlig455_041905 {REF} {Length: 5910} {Pfam: C2 domain [PF00168.32, score=91.3]} {Human: ENSG00000135636, DYSF, dysferlin, [Score=346, Expect=1e-99]; ENSG00000138119, MYOF, myoferlin, [Score=330, Expect=2e-94]} {Mouse: ENSMUSG00000048612, Myof, myoferlin, [Score=337, Expect=1e-96]} {Dmel: FBgn0266757, mfr, misfire, [Score=187, Expect=2e-49]} {Celegans: WBGene00001414, fer-1, Sperm vesicle fusion protein fer-1, [Score=149, Expect=3e-36]} {Smed: dd_Smed_v6_6816_0_1, dd_Smed_v6_6816_0_1, [Score=280, Expect=5e-78]} {RNA1509_3003} {RNA1310_225.1} {RNA815_107.1}
7. MligTC455_11561 341 7.11 Mlig455_002031, Mlig455_002229

Neo: -

Age: Down-Up-Down

Region-enriched R4: 2.928/0.00212

 LIMS2, LIMS4 0.953 - - - - - 0.953

Mlig455_002031 {REF} {Length: 1327} {Pfam: LIM domain [PF00412.24, score=151.0]; Double zinc ribbon domain [PF18912.2, score=19.4]} {Human: ENSG00000256671, LIMS4, LIM zinc finger domain containing 4, [Score=281, Expect=9e-92]; ENSG00000256977, LIMS3, LIM zinc finger domain containing 3, [Score=281, Expect=9e-92]; ENSG00000169756, LIMS1, LIM zinc finger domain containing 1, [Score=273, Expect=6e-89]; ENSG00000072163, LIMS2, LIM zinc finger domain containing 2, [Score=272, Expect=6e-89]} {Mouse: ENSMUSG00000019920, Lims1, LIM and senescent cell antigen-like domains 1, [Score=279, Expect=2e-91]; ENSMUSG00000024395, Lims2, LIM and senescent cell antigen like domains 2, [Score=268, Expect=1e-87]} {Dmel: FBgn0020249, stck, steamer duck, [Score=313, Expect=2e-105]} {Celegans: WBGene00006826, unc-97, LIM domain-containing protein unc-97, [Score=304, Expect=7e-102]} {Smed: dd_Smed_v6_2476_0_1, dd_Smed_v6_2476_0_1, [Score=325, Expect=7e-110]} {RNA1310_54027} {RNA815_9806}

Mlig455_002229 {REF} {Length: 1692} {Pfam: LIM domain [PF00412.24, score=182.4]} {Human: ENSG00000072163, LIMS2, LIM zinc finger domain containing 2, [Score=343, Expect=6e-116]; ENSG00000169756, LIMS1, LIM zinc finger domain containing 1, [Score=339, Expect=2e-114]; ENSG00000256671, LIMS4, LIM zinc finger domain containing 4, [Score=339, Expect=7e-114]; ENSG00000256977, LIMS3, LIM zinc finger domain containing 3, [Score=339, Expect=7e-114]} {Mouse: ENSMUSG00000019920, Lims1, LIM and senescent cell antigen-like domains 1, [Score=344, Expect=3e-116]; ENSMUSG00000024395, Lims2, LIM and senescent cell antigen like domains 2, [Score=334, Expect=4e-113]} {Dmel: FBgn0020249, stck, steamer duck, [RH, Score=389, Expect=2e-134]} {Celegans: WBGene00006826, unc-97, LIM domain-containing protein unc-97, [RH, Score=376, Expect=1e-129]} {Smed: dd_Smed_v6_2476_0_1, dd_Smed_v6_2476_0_1, [Score=402, Expect=1e-139]} {RNA1310_24691} {RNA815_9806}
8. MligTC455_21295 565 11.77 Mlig455_038686

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 5.164

 0.953 - - - 0.953 - - Mlig455_038686 {REF} {Length: 1106} {TRANSSPLICED} {RNA1509_19342} {RNA1310_31717} {RNA815_13757}
9. MligTC455_38409 636 13.25 Mlig455_070609

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.318

Region-specific R4: 5.733

Region-enriched R4: 3.952/0.00000

Regeneration-downregulated R4: -2.680

Regeneration-depleted R4: -2.680

 0.953 - - - 0.953 - - Mlig455_070609 {REF} {Length: 4268} {RNA1509_17184, RNA1509_2763, RNA1509_34093, RNA1509_56978} {RNA1310_2909.1, RNA1509_17184, RNA1509_2763, RNA1509_34093, RNA1509_56978} {RNA1509_17184, RNA1509_2763, RNA1509_34093, RNA1509_56978, RNA815_6445.1}
10. MligTC455_17273 151 3.15 Mlig455_015059

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 4.761

Region-enriched R4: 1.993/0.02122

 LRP2 0.952 - - - 0.952 - - Mlig455_015059 {REF} {Length: 1865} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=129.4]; CUB domain [PF00431.22, score=40.5]} {Human: ENSG00000081479, LRP2, LDL receptor related protein 2, [Score=125, Expect=3e-30]; ENSG00000168702, LRP1B, LDL receptor related protein 1B, [Score=120, Expect=2e-28]} {Mouse: ENSMUSG00000027070, Lrp2, low density lipoprotein receptor-related protein 2, [Score=130, Expect=4e-32]} {Dmel: FBgn0004649, yl, yolkless, [Score=118, Expect=3e-28]} {Celegans: WBGene00003071, lrp-1, Low-density lipoprotein receptor-related protein, [Score=115, Expect=3e-27]} {Smed: dd_Smed_v6_9829_0_1, dd_Smed_v6_9829_0_1, [Score=87.4, Expect=2e-18]} {RNA1310_15261} {RNA815_6574.1}
11. MligTC455_42459 156 3.24 Mlig455_057632

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.712

 0.952 - - - - - 0.952 Mlig455_057632 {REF} {Length: 1303} {RNA1310_51585} {RNA815_30465}
12. MligTC455_19475 282 5.87 Mlig455_069236

Neo: -

Age: -

 SLC46A1 0.95 - - - - - 0.950 Mlig455_069236 {REF} {Length: 2839} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=49.1]} {Human: ENSG00000076351, SLC46A1, solute carrier family 46 member 1, [Score=132, Expect=5e-33]} {Mouse: ENSMUSG00000029650, Slc46a3, solute carrier family 46, member 3, [Score=144, Expect=5e-37]} {Dmel: FBgn0050344, CG30344, [RH, Score=79.7, Expect=2e-15]} {Celegans: WBGene00009582, F40F9.5, [Score=49.7, Expect=4e-06]} {Smed: dd_Smed_v6_9814_0_1, dd_Smed_v6_9814_0_1, [RH, Score=185, Expect=2e-52]} {RNA1509_21682, RNA1509_38894, RNA1509_9873} {RNA1310_11871, RNA1509_21682, RNA1509_38894, RNA1509_9873} {RNA1509_21682, RNA1509_38894, RNA1509_9873, RNA815_3733}
13. MligTC455_21028 477 9.95 Mlig455_040137

Neo: -

Age: logFC(26M/2M)=-0.333

 NOTCH2 0.95 - - - - - 0.950 Mlig455_040137 {REF} {Length: 3557} {Pfam: Calcium-binding EGF domain [PF07645.17, score=284.9]; EGF-like domain [PF00008.29, score=212.4]; Human growth factor-like EGF [PF12661.9, score=149.3]; EGF domain [PF12947.9, score=133.6]; Delta serrate ligand [PF01414.21, score=93.4]; EGF-like domain [PF07974.15, score=77.9]; Complement Clr-like EGF-like [PF12662.9, score=57.4]} {Human: ENSG00000134250, NOTCH2, notch 2, [Score=281, Expect=1e-78]; ENSG00000074181, NOTCH3, notch 3, [Score=280, Expect=2e-78]; ENSG00000235396, NOTCH4, notch 4, [Score=275, Expect=9e-77]; ENSG00000232339, NOTCH4, notch 4, [Score=273, Expect=3e-76]; ENSG00000206312, NOTCH4, notch 4, [Score=273, Expect=3e-76]; ENSG00000223355, NOTCH4, notch 4, [Score=273, Expect=3e-76]; ENSG00000204301, NOTCH4, notch 4, [Score=273, Expect=3e-76]; ENSG00000234876, NOTCH4, notch 4, [Score=273, Expect=3e-76]; ENSG00000148400, NOTCH1, notch 1, [Score=268, Expect=2e-74]} {Mouse: ENSMUSG00000038146, Notch3, notch 3, [Score=272, Expect=7e-76]; ENSMUSG00000027878, Notch2, notch 2, [Score=271, Expect=1e-75]; ENSMUSG00000026923, Notch1, notch 1, [Score=270, Expect=5e-75]} {Dmel: FBgn0004647, N, Notch, [Score=286, Expect=1e-80]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=225, Expect=2e-60]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=223, Expect=3e-60]} {RNA1509_24587} {RNA1310_15735} {RNA815_2179.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA