M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17488

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17488 125 2.60 Mlig455_042781

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.373

 SULF1 Mlig455_042781 {REF} {Length: 3766} {TRANSSPLICED} {Pfam: Sulfatase [PF00884.25, score=141.9]; Type I phosphodiesterase / nucleotide pyrophosphatase [PF01663.24, score=22.0]} {Human: ENSG00000137573, SULF1, sulfatase 1, [Score=377, Expect=2e-119]; ENSG00000196562, SULF2, sulfatase 2, [Score=370, Expect=8e-117]} {Mouse: ENSMUSG00000016918, Sulf1, sulfatase 1, [Score=378, Expect=3e-120]; ENSMUSG00000006800, Sulf2, sulfatase 2, [Score=368, Expect=3e-116]} {Dmel: FBgn0040271, Sulf1, Sulfated, [Score=368, Expect=2e-114]} {Celegans: WBGene00006308, sul-1, Putative extracellular sulfatase Sulf-1 homolog, [Score=383, Expect=4e-124]} {RNA1509_36005} {RNA1310_5701} {RNA815_1813}

Cumulative graph for MligTC455_17488

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.357 2.168 0.99973 1.00000
RegionR2 0.239 2.168 0.72561 1.00000
RegionR3 -1.003 2.168 0.94237 1.00000
RegionR4 0.956 2.168 0.44524 0.77423
RegionR5 0.854 2.168 0.43766 0.79808
RegionR6 1.432 2.168 0.24414 0.82929
RegionR7 2.517 2.168 0.04754 0.41911
RegionR8 -2.638 2.168 0.99959 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.354 2.168 0.99989 1.00000
RegenerationR2 0.426 2.168 0.56389 0.90040
RegenerationR3 1.531 2.168 0.18213 0.61870
RegenerationR4 0.909 2.168 0.36257 0.78844
RegenerationR5 -0.476 2.168 0.55749 0.88978
RegenerationR6 0.268 2.168 0.77932 0.96723
RegenerationBL 0.206 2.168 0.75366 1.00000
RegenerationTP -0.94 2.168 0.89659 1.00000


Genes with expression patterns similar to MligTC455_17488

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17488 125 2.6 Mlig455_042781

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.373

 SULF1 4 - - 1.000 1.000 1.000 1.000 Mlig455_042781 {REF} {Length: 3766} {TRANSSPLICED} {Pfam: Sulfatase [PF00884.25, score=141.9]; Type I phosphodiesterase / nucleotide pyrophosphatase [PF01663.24, score=22.0]} {Human: ENSG00000137573, SULF1, sulfatase 1, [Score=377, Expect=2e-119]; ENSG00000196562, SULF2, sulfatase 2, [Score=370, Expect=8e-117]} {Mouse: ENSMUSG00000016918, Sulf1, sulfatase 1, [Score=378, Expect=3e-120]; ENSMUSG00000006800, Sulf2, sulfatase 2, [Score=368, Expect=3e-116]} {Dmel: FBgn0040271, Sulf1, Sulfated, [Score=368, Expect=2e-114]} {Celegans: WBGene00006308, sul-1, Putative extracellular sulfatase Sulf-1 homolog, [Score=383, Expect=4e-124]} {RNA1509_36005} {RNA1310_5701} {RNA815_1813}
2. MligTC455_36617 284 5.91 Mlig455_014735

Neo: -

Age: Up-Down-Down

 PCDH11X 2.647 - - 0.921 0.954 - 0.772 Mlig455_014735 {REF} {Length: 4045} {Pfam: Cadherin domain [PF00028.19, score=226.7]; Putative ER transporter, 6TM, N-terminal [PF10337.11, score=21.3]; Cadherin prodomain like [PF08758.13, score=21.0]} {Human: ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=232, Expect=1e-61]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=231, Expect=4e-61]} {Mouse: ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=222, Expect=1e-58]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=218, Expect=1e-57]; ENSMUSG00000029108, Pcdh7, protocadherin 7, [Score=214, Expect=4e-56]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=213, Expect=4e-56]} {Dmel: FBgn0024836, stan, starry night, [Score=198, Expect=6e-51]} {Celegans: WBGene00019994, cdh-1, CaDHerin family, [Score=160, Expect=2e-39]} {Smed: dd_Smed_v6_13155_0_1, dd_Smed_v6_13155_0_1, [Score=287, Expect=2e-81]} {RNA1509_23140} {RNA1310_2843.3} {RNA815_10109}
3. MligTC455_09847 49 1.03 Mlig455_008171, Mlig455_008210, Mlig455_069594

Neo: -

Age: Down-Up-Up

 AL031281.2, CDC42 0.965 - - - 0.965 - -

Mlig455_008171 {REF} {Length: 849} {Pfam: Ras family [PF00071.24, score=78.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=32.3]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=140, Expect=2e-41]; ENSG00000070831, CDC42, cell division cycle 42, [Score=140, Expect=2e-41]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=140, Expect=1e-41]} {Dmel: FBgn0010341, Cdc42, [Score=136, Expect=3e-40]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [Score=143, Expect=3e-43]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=122, Expect=5e-35]} {RNA1310_50317} {RNA815_24750}

Mlig455_008210 {REF} {Length: 1780} {Pfam: Ras family [PF00071.24, score=103.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=32.8]} {Human: ENSG00000070831, CDC42, cell division cycle 42, [Score=170, Expect=1e-53]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=170, Expect=1e-53]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=170, Expect=9e-54]} {Dmel: FBgn0010341, Cdc42, [Score=174, Expect=3e-55]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [Score=177, Expect=2e-56]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=159, Expect=8e-50]} {RNA1310_50317} {RNA815_24750}

Mlig455_069594 {REF} {Length: 948} {Pfam: Ras family [PF00071.24, score=35.4]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=85.1, Expect=3e-19]; ENSG00000070831, CDC42, cell division cycle 42, [Score=85.1, Expect=3e-19]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=85.1, Expect=2e-19]} {Dmel: FBgn0010341, Cdc42, [Score=80.1, Expect=9e-18]} {Celegans: WBGene00015646, mlt-10, [Score=164, Expect=7e-46]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=70.1, Expect=3e-14]} {RNA1310_50317} {RNA815_24750}
4. MligTC455_12021 82 1.71 Mlig455_035113

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_035113 {REF} {Length: 1638} {Pfam: Lectin C-type domain [PF00059.23, score=23.3]} {RNA1509_15746, RNA1509_30689} {RNA1310_39642, RNA1509_30689} {RNA1509_30689, RNA815_2585.3}
5. MligTC455_36641 77 1.6 Mlig455_003189, Mlig455_051811

Neo: -

Age: -

 0.958 - - - 0.958 - -

Mlig455_003189 {REF} {Length: 804} {NoTransDecoderORF} {RNA1509_41508} {RNA1310_108926} {RNA815_45877.2}

Mlig455_051811 {REF} {Length: 2394} {RNA1509_20157} {RNA1310_1800.1} {RNA815_318.1}
6. MligTC455_41577 226 4.7 Mlig455_056190

Neo: -

Age: -

 CPA2 0.955 - - - - 0.955 - Mlig455_056190 {REF} {Length: 2220} {Pfam: Zinc carboxypeptidase [PF00246.26, score=244.5]; Carboxypeptidase activation peptide [PF02244.18, score=24.0]} {Human: ENSG00000158516, CPA2, carboxypeptidase A2, [Score=181, Expect=2e-51]; ENSG00000165078, CPA6, carboxypeptidase A6, [Score=179, Expect=2e-50]; ENSG00000144410, CPO, carboxypeptidase O, [Score=179, Expect=3e-51]; ENSG00000128510, CPA4, carboxypeptidase A4, [Score=174, Expect=1e-48]} {Mouse: ENSMUSG00000071553, Cpa2, carboxypeptidase A2, pancreatic, [Score=189, Expect=1e-54]; ENSMUSG00000042501, Cpa6, carboxypeptidase A6, [Score=187, Expect=1e-53]} {Dmel: FBgn0029804, CG3097, [RH, Score=215, Expect=2e-64]} {Celegans: WBGene00020281, T06A4.1, [RH, Score=223, Expect=3e-66]} {Smed: dd_Smed_v6_5999_0_1, dd_Smed_v6_5999_0_1, [RH, Score=248, Expect=2e-77]} {RNA1509_12605} {RNA1310_10687.1, RNA1509_12605} {RNA1509_12605, RNA815_3959.1}
7. MligTC455_49786 127 2.65 Mlig455_015160

Neo: Int S/G2/M

Age: -

 0.952 - - - 0.952 - - Mlig455_015160 {REF} {Length: 4010} {Pfam: NMDA receptor-regulated gene protein 2 C-terminus [PF10505.11, score=48.1]} {RNA1509_32951, RNA1509_49066} {RNA1310_4961, RNA1509_32951, RNA1509_49066} {RNA1509_32951, RNA1509_49066, RNA815_3973}
8. MligTC455_46108 13 0.28 Mlig455_003503

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_003503 {REF} {Length: 2542} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=20.8]} {Celegans: WBGene00019445, frpr-12, FMRFamide Peptide Receptor family, [Score=48.1, Expect=8e-06]} {Smed: dd_Smed_v6_21110_0_1, dd_Smed_v6_21110_0_1, [Score=202, Expect=8e-61]} {RNA1310_42800} {RNA815_34794}
9. MligTC455_07327 46 0.95 Mlig455_001874, Mlig455_001949

Neo: -

Age: -

 0.95 - - - 0.950 - -

Mlig455_001874 {REF} {Length: 1082} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=42.3]} {Celegans: WBGene00019444, frpr-11, FMRFamide Peptide Receptor family, [Score=47.8, Expect=7e-06]} {Smed: dd_Smed_v6_3522_0_1, dd_Smed_v6_3522_0_1, [Score=57.4, Expect=3e-09]} {RNA1310_94087} {RNA815_48529}

Mlig455_001949 {REF} {Length: 2058} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=42.4]} {Smed: dd_Smed_v6_3522_0_1, dd_Smed_v6_3522_0_1, [Score=57.0, Expect=4e-09]} {RNA1509_46461} {RNA1310_94087} {RNA815_57978}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA