M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17600

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17600 39 0.81 Mlig455_068321

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.570

 Mlig455_068321 {REF} {Length: 947} {RNA1509_59430} {RNA1310_38081.1} {RNA815_31002.2}

Cumulative graph for MligTC455_17600

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.65 1.039 0.99979 1.00000
RegionR2 -0.296 1.039 0.83068 1.00000
RegionR3 2.069 1.039 0.19330 0.73072
RegionR4 5.152 1.039 0.03158 0.14105
RegionR5 -0.983 1.039 0.99981 1.00000
RegionR6 0.689 1.039 0.46437 1.00000
RegionR7 -2.926 1.039 0.99991 1.00000
RegionR8 -3.054 1.039 0.99990 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.687 1.039 0.99979 1.00000
RegenerationR2 0.412 1.039 0.90275 1.00000
RegenerationR3 -1.942 1.039 0.25452 0.68904
RegenerationR4 -1.402 1.039 0.37840 0.80044
RegenerationR5 1.749 1.039 0.32125 0.74486
RegenerationR6 -3.342 1.039 0.13110 0.44456
RegenerationBL 3.227 1.039 0.22974 0.58050
RegenerationTP 2.676 1.039 0.47149 0.88181


Genes with expression patterns similar to MligTC455_17600

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17600 39 0.81 Mlig455_068321

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.570

 3 1.000 - 1.000 - - 1.000 Mlig455_068321 {REF} {Length: 947} {RNA1509_59430} {RNA1310_38081.1} {RNA815_31002.2}
2. MligTC455_49470 54 1.13 Mlig455_054252

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.395

Region-enriched R3: 5.217/0.00090

 B3GNT5 1.723 0.963 - 0.760 - - - Mlig455_054252 {REF} {Length: 3081} {Pfam: Galactosyltransferase [PF01762.23, score=90.8]} {Human: ENSG00000176597, B3GNT5, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5, [Score=99.4, Expect=6e-22]} {Mouse: ENSMUSG00000034780, B3galt1, UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1, [Score=89.0, Expect=6e-19]} {Dmel: FBgn0000221, brn, brainiac, [Score=77.4, Expect=3e-15]} {Celegans: WBGene00044630, bus-17, Hexosyltransferase, [RH, Score=65.5, Expect=2e-11]} {Smed: dd_Smed_v6_13702_0_1, dd_Smed_v6_13702_0_1, [RH, Score=170, Expect=1e-47]} {RNA1509_54587} {RNA1310_18654} {RNA815_8083}
3. MligTC455_49469 65 1.35 Mlig455_016236

Neo: -

Age: -

Region-enriched R3: 5.774/0.00000

 B3GNT5 1.662 0.956 - 0.706 - - - Mlig455_016236 {REF} {Length: 2696} {Pfam: Galactosyltransferase [PF01762.23, score=91.0]} {Human: ENSG00000176597, B3GNT5, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5, [Score=100, Expect=1e-22]} {Mouse: ENSMUSG00000034780, B3galt1, UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1, [Score=86.3, Expect=3e-18]; ENSMUSG00000043300, B3galnt1, UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1, [Score=83.2, Expect=4e-17]} {Dmel: FBgn0000221, brn, brainiac, [Score=77.0, Expect=3e-15]} {Celegans: WBGene00044630, bus-17, Hexosyltransferase, [RH, Score=65.5, Expect=2e-11]} {Smed: dd_Smed_v6_13702_0_1, dd_Smed_v6_13702_0_1, [RH, Score=171, Expect=5e-49]} {RNA1509_54587, RNA1509_56943} {RNA1310_18654, RNA1509_54587, RNA1509_56943} {RNA1509_54587, RNA1509_56943, RNA815_8083}
4. MligTC455_36601 91 1.89 Mlig455_041320

Neo: -

Age: -

 0.978 - - 0.978 - - - Mlig455_041320 {REF} {Length: 3476} {Pfam: Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=21.1]} {RNA1509_34867} {RNA1310_25426.1} {RNA815_30726}
5. MligTC455_53029 101 2.11 Mlig455_048488

Neo: -

Age: Down-Down-Up

 GCM1 0.978 - - 0.978 - - - Mlig455_048488 {REF} {Length: 2710} {Pfam: GCM motif protein [PF03615.17, score=220.3]} {Human: ENSG00000137270, GCM1, glial cells missing homolog 1, [RH, Score=189, Expect=1e-52]; ENSG00000124827, GCM2, glial cells missing homolog 2, [RH, Score=187, Expect=2e-51]} {Mouse: ENSMUSG00000021362, Gcm2, glial cells missing homolog 2, [RH, Score=189, Expect=8e-56]; ENSMUSG00000023333, Gcm1, glial cells missing homolog 1, [RH, Score=186, Expect=1e-51]} {Dmel: FBgn0014179, gcm, glial cells missing, [RH, Score=219, Expect=3e-63]} {Smed: dd_Smed_v6_15107_0_1, dd_Smed_v6_15107_0_1, [RH, Score=179, Expect=2e-50]} {RNA1509_58813} {RNA1310_10166.1, RNA1509_58813} {RNA1509_58813, RNA815_24649}
6. MligTC455_32870 33 0.69 Mlig455_028340

Neo: -

Age: -

 PWWP2A 0.977 - - 0.977 - - - Mlig455_028340 {REF} {Length: 2944} {TRANSSPLICED} {Pfam: PWWP domain [PF00855.19, score=41.1]} {Human: ENSG00000170234, PWWP2A, PWWP domain containing 2A, [Score=65.9, Expect=1e-10]} {Mouse: ENSMUSG00000060260, Pwwp2b, PWWP domain containing 2B, [RH, Score=65.9, Expect=8e-11]; ENSMUSG00000110798, Pwwp2b, PWWP domain containing 2B, [RH, Score=65.9, Expect=8e-11]} {Smed: dd_Smed_v6_11117_0_1, dd_Smed_v6_11117_0_1, [RH, Score=68.9, Expect=3e-12]} {RNA1509_11193, RNA1509_51578} {RNA1310_14175, RNA1509_11193, RNA1509_51578} {RNA1509_11193, RNA1509_51578, RNA815_5362}
7. MligTC455_13350 45 0.93 Mlig455_050065

Neo: -

Age: -

Region-enriched R2: 6.087/0.03122

 0.965 - - 0.965 - - - Mlig455_050065 {REF} {Length: 558} {NoTransDecoderORF} {RNA1509_56822} {RNA1310_35955} {RNA815_1171.1}
8. MligTC455_15198 3 0.07 Mlig455_022925

Neo: -

Age: -

 HTR1B 0.964 0.964 - - - - - Mlig455_022925 {REF} {Length: 1671} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=129.1]; Serpentine type 7TM GPCR chemoreceptor Sri [PF10327.11, score=25.7]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=22.9]} {Human: ENSG00000135312, HTR1B, 5-hydroxytryptamine receptor 1B, [Score=139, Expect=7e-38]} {Mouse: ENSMUSG00000050783, Htr1f, 5-hydroxytryptamine (serotonin) receptor 1F, [Score=139, Expect=2e-38]; ENSMUSG00000034997, Htr2a, 5-hydroxytryptamine (serotonin) receptor 2A, [Score=136, Expect=1e-36]} {Dmel: FBgn0250910, Octbeta3R, Octopamine beta3 receptor, [Score=131, Expect=5e-35]} {Celegans: WBGene00008890, ser-5, SERotonin/octopamine receptor family, [Score=102, Expect=1e-24]} {Smed: dd_Smed_v6_24454_0_1, dd_Smed_v6_24454_0_1, [Score=137, Expect=2e-37]}
9. MligTC455_38376 24 0.49 Mlig455_011914

Neo: -

Age: -

Region-enriched R3: 6.389/0.00036

 FKRP 0.962 0.962 - - - - - Mlig455_011914 {REF} {Length: 1726} {Pfam: LicD family [PF04991.15, score=48.2]} {Human: ENSG00000181027, FKRP, fukutin related protein, [Score=49.7, Expect=6e-06]} {Smed: dd_Smed_v6_7880_0_1, dd_Smed_v6_7880_0_1, [Score=211, Expect=7e-65]} {RNA1310_24211} {RNA815_29989}
10. MligTC455_50132 162 3.37 Mlig455_043179

Neo: Int S/G2/M

Age: Down-Up-Down

 PFDN1 0.962 - - 0.962 - - - Mlig455_043179 {REF} {Length: 694} {Pfam: Prefoldin subunit [PF01920.22, score=63.7]} {Human: ENSG00000113068, PFDN1, prefoldin subunit 1, [RH, Score=91.3, Expect=2e-24]} {Mouse: ENSMUSG00000024346, Pfdn1, prefoldin 1, [RH, Score=91.3, Expect=2e-24]} {Dmel: FBgn0031776, Pfdn1, Prefoldin 1, [RH, Score=72.0, Expect=5e-17]} {Celegans: WBGene00007443, pfd-1, Probable prefoldin subunit 1, [RH, Score=49.7, Expect=1e-08]} {RNA1509_23029, RNA1509_51158} {RNA1310_46841, RNA1509_23029, RNA1509_51158} {RNA1509_23029, RNA1509_51158, RNA815_26502}
11. MligTC455_17598 654 13.62 Mlig455_007290

Neo: -

Age: Down-Down-Up

 0.96 - - - - - 0.960 Mlig455_007290 {REF} {Length: 1018} {RNA1509_58239, RNA1509_59430} {RNA1310_38081.1, RNA1509_58239, RNA1509_59430} {RNA1509_58239, RNA1509_59430, RNA815_31002.2}
12. MligTC455_45629 24 0.49 Mlig455_032109

Neo: -

Age: -

 0.956 0.956 - - - - - Mlig455_032109 {REF} {Length: 788} {Pfam: Pancreatic hormone peptide [PF00159.20, score=28.0]} {RNA1509_59316} {RNA1310_91502} {RNA815_61453}
13. MligTC455_26667 92 1.91 Mlig455_014529

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_014529 {REF} {Length: 1721} {RNA1509_15438} {RNA1310_134322} {RNA815_18679}
14. MligTC455_43726 738 15.37 Mlig455_031091, Mlig455_031126

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.725

Region-specific R3: 8.783

Region-enriched R3: 7.816/0.00000

 0.951 0.951 - - - - -

Mlig455_031091 {REF} {Length: 2108} {TRANSSPLICED} {RNA1509_10925, RNA1509_41471} {RNA1310_123716, RNA1509_10925, RNA1509_41471} {RNA1509_10925, RNA1509_41471, RNA815_13649.1}

Mlig455_031126 {REF} {Length: 1113} {TRANSSPLICED} {RNA1509_25603} {RNA1310_89218} {RNA815_13649.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA