M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32870

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32870 33 0.69 Mlig455_028340

Neo: -

Age: -

 PWWP2A Mlig455_028340 {REF} {Length: 2944} {TRANSSPLICED} {Pfam: PWWP domain [PF00855.19, score=41.1]} {Human: ENSG00000170234, PWWP2A, PWWP domain containing 2A, [Score=65.9, Expect=1e-10]} {Mouse: ENSMUSG00000060260, Pwwp2b, PWWP domain containing 2B, [RH, Score=65.9, Expect=8e-11]; ENSMUSG00000110798, Pwwp2b, PWWP domain containing 2B, [RH, Score=65.9, Expect=8e-11]} {Smed: dd_Smed_v6_11117_0_1, dd_Smed_v6_11117_0_1, [RH, Score=68.9, Expect=3e-12]} {RNA1509_11193, RNA1509_51578} {RNA1310_14175, RNA1509_11193, RNA1509_51578} {RNA1509_11193, RNA1509_51578, RNA815_5362}

Cumulative graph for MligTC455_32870

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.898 1.151 0.99966 1.00000
RegionR2 3.272 1.151 0.07317 0.33013
RegionR3 3.122 1.151 0.06075 0.43408
RegionR4 2.514 1.151 0.06287 0.22520
RegionR5 0.698 1.151 0.70545 1.00000
RegionR6 1.489 1.151 0.42117 0.98804
RegionR7 -1.566 1.151 0.99959 1.00000
RegionR8 -3.63 1.151 0.99984 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.426 1.151 0.99999 1.00000
RegenerationR2 1.049 1.151 0.28695 0.72976
RegenerationR3 1.226 1.151 0.26710 0.70155
RegenerationR4 0.993 1.151 0.35969 0.78706
RegenerationR5 1.422 1.151 0.26116 0.69237
RegenerationR6 1.346 1.151 0.37903 0.72044
RegenerationBL 4.449 1.151 0.01908 0.14894
RegenerationTP 0.598 1.151 0.99997 1.00000


Genes with expression patterns similar to MligTC455_32870

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32870 33 0.69 Mlig455_028340

Neo: -

Age: -

 PWWP2A 5 - 1.000 1.000 1.000 1.000 1.000 Mlig455_028340 {REF} {Length: 2944} {TRANSSPLICED} {Pfam: PWWP domain [PF00855.19, score=41.1]} {Human: ENSG00000170234, PWWP2A, PWWP domain containing 2A, [Score=65.9, Expect=1e-10]} {Mouse: ENSMUSG00000060260, Pwwp2b, PWWP domain containing 2B, [RH, Score=65.9, Expect=8e-11]; ENSMUSG00000110798, Pwwp2b, PWWP domain containing 2B, [RH, Score=65.9, Expect=8e-11]} {Smed: dd_Smed_v6_11117_0_1, dd_Smed_v6_11117_0_1, [RH, Score=68.9, Expect=3e-12]} {RNA1509_11193, RNA1509_51578} {RNA1310_14175, RNA1509_11193, RNA1509_51578} {RNA1509_11193, RNA1509_51578, RNA815_5362}
2. MligTC455_39290 539 11.23 Mlig455_050038, Mlig455_056986

Neo: -

Age: -

Region-enriched R7: 2.078/0.04135

 GDPD1, PDIA3 2.625 - - 0.816 0.951 - 0.858

Mlig455_050038 {REF} {Length: 3530} {TRANSSPLICED} {Pfam: Thioredoxin [PF00085.22, score=111.4]; Glycerophosphoryl diester phosphodiesterase family [PF03009.19, score=91.5]; Thioredoxin-like domain [PF13848.8, score=26.3]; Calsequestrin [PF01216.19, score=19.6]} {Human: ENSG00000153982, GDPD1, glycerophosphodiester phosphodiesterase domain containing 1, [RH, Score=268, Expect=8e-85]} {Mouse: ENSMUSG00000061666, Gdpd1, glycerophosphodiester phosphodiesterase domain containing 1, [RH, Score=256, Expect=2e-80]} {Dmel: FBgn0033663, ERp60, [Score=199, Expect=8e-57]} {Celegans: WBGene00003964, pdi-3, [Score=209, Expect=1e-60]} {Smed: dd_Smed_v6_4493_0_2, dd_Smed_v6_4493_0_2, [RH, Score=282, Expect=4e-90]} {RNA1509_21060} {RNA1310_17651} {RNA815_11831}

Mlig455_056986 {REF} {Length: 8158} {TRANSSPLICED} {Pfam: Thioredoxin [PF00085.22, score=199.7]; Glycerophosphoryl diester phosphodiesterase family [PF03009.19, score=89.3]; Thioredoxin-like domain [PF13848.8, score=82.0]; Thioredoxin-like domain [PF13098.8, score=31.3]; Thioredoxin-like [PF13899.8, score=28.0]; Thioredoxin-like [PF13905.8, score=26.4]; Glycosyltransferase Family 4 [PF13439.8, score=24.1]; AhpC/TSA family [PF00578.23, score=23.3]; Redoxin [PF08534.12, score=19.7]; Calsequestrin [PF01216.19, score=19.2]} {Human: ENSG00000167004, PDIA3, protein disulfide isomerase family A member 3, [RH, Score=476, Expect=4e-160]} {Mouse: ENSMUSG00000027248, Pdia3, protein disulfide isomerase associated 3, [Score=468, Expect=3e-157]} {Dmel: FBgn0033663, ERp60, [Score=449, Expect=4e-150]} {Celegans: WBGene00003964, pdi-3, [Score=439, Expect=2e-146]} {Smed: dd_Smed_v6_426_0_1, dd_Smed_v6_426_0_1, [Score=538, Expect=0.0]} {RNA1509_24311} {RNA1310_17651} {RNA815_11831}
3. MligTC455_52219 214 4.45 Mlig455_000626

Neo: -

Age: logFC(26M/2M)=-0.288

 1.798 - - - - 0.962 0.836 Mlig455_000626 {REF} {Length: 1967} {TRANSSPLICED} {RNA1509_39878} {RNA1310_38967} {RNA815_5599}
4. MligTC455_33901 15 0.32 Mlig455_051784

Neo: -

Age: -

 0.991 - - - - 0.991 - Mlig455_051784 {REF} {Length: 2208} {RNA1310_94009}
5. MligTC455_17600 39 0.81 Mlig455_068321

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.570

 0.977 - - 0.977 - - - Mlig455_068321 {REF} {Length: 947} {RNA1509_59430} {RNA1310_38081.1} {RNA815_31002.2}
6. MligTC455_53098 10 0.2 Mlig455_000210

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_000210 {REF} {Length: 1856} {NoTransDecoderORF} {RNA1509_35494} {RNA1310_44521} {RNA815_38154}
7. MligTC455_08858 195 4.07 Mlig455_058112

Neo: -

Age: -

Regeneration-enriched R5: 4.501
Regeneration-enriched R6: 4.064

 0.963 - - 0.963 - - - Mlig455_058112 {REF} {Length: 1662} {RNA1509_26637} {RNA1310_27547} {RNA815_16487}
8. MligTC455_13092 38 0.79 Mlig455_036237

Neo: -

Age: -

Regeneration-downregulated R2: -3.428

Regeneration-depleted R2: -3.428

 0.963 - - - - 0.963 - Mlig455_036237 {REF} {Length: 1392} {Pfam: Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=28.1]} {RNA1509_41201} {RNA1310_51571} {RNA815_38501}
9. MligTC455_40800 67 1.41 Mlig455_028979

Neo: -

Age: logFC(26M/2M)=-0.452

 DAPK1 0.96 - - - 0.960 - - Mlig455_028979 {REF} {Length: 4667} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=123.2]; Ankyrin repeats (many copies) [PF13637.8, score=90.4]; Ankyrin repeats (many copies) [PF13857.8, score=83.4]; Ankyrin repeat [PF00023.32, score=79.6]; Ankyrin repeat [PF13606.8, score=67.2]; Death domain [PF00531.24, score=55.4]; C-terminal of Roc, COR, domain [PF16095.7, score=23.0]} {Human: ENSG00000196730, DAPK1, death associated protein kinase 1, [Score=433, Expect=1e-130]} {Mouse: ENSMUSG00000021559, Dapk1, death associated protein kinase 1, [Score=429, Expect=5e-129]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=124, Expect=3e-28]} {Celegans: WBGene00003400, dapk-1, Death-associated protein kinase dapk-1, [Score=462, Expect=4e-145]} {Smed: dd_Smed_v6_9475_0_1, dd_Smed_v6_9475_0_1, [Score=795, Expect=0.0]} {RNA1509_32836} {RNA1310_4314, RNA1509_32836} {RNA1509_32836, RNA815_16120}
10. MligTC455_21219 137 2.85 Mlig455_065141

Neo: -

Age: logFC(26M/2M)=-0.320

 0.958 - - - 0.958 - - Mlig455_065141 {REF} {Length: 3264} {TRANSSPLICED} {Pfam: TIR domain [PF13676.8, score=72.5]} {Smed: dd_Smed_v6_9242_0_1, dd_Smed_v6_9242_0_1, [RH, Score=179, Expect=1e-47]} {RNA1509_44392} {RNA1310_12841.1} {RNA815_12844}
11. MligTC455_05827 107 2.23 Mlig455_026680

Neo: -

Age: Up-Down-Up

 0.953 - - - - 0.953 - Mlig455_026680 {REF} {Length: 2237} {TRANSSPLICED} {RNA1509_15690} {RNA1310_208} {RNA815_15163}
12. MligTC455_15731 36 0.76 Mlig455_045491

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_045491 {REF} {Length: 560} {NoTransDecoderORF} {RNA1509_38091} {RNA1310_15069.1} {RNA815_11643}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA