M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17631

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17631 1238 25.80 Mlig455_068095

Neo: -

Age: -

Region-enriched R2: 1.244/0.02935

Regeneration-depleted BL: -2.369
Regeneration-depleted R6: -1.764

 Mlig455_068095 {REF} {Length: 2575} {TRANSSPLICED} {Pfam: DNA-binding nuclear phosphoprotein p8 [PF10195.11, score=28.1]} {Smed: dd_Smed_v6_713_0_1, dd_Smed_v6_713_0_1, [Score=42.7, Expect=6e-07]} {RNA1509_18275, RNA1509_20405, RNA1509_41679, RNA1509_41747, RNA1509_50124} {RNA1310_62289, RNA1509_18275, RNA1509_20405, RNA1509_41679, RNA1509_41747, RNA1509_50124} {RNA1509_18275, RNA1509_20405, RNA1509_41679, RNA1509_41747, RNA1509_50124, RNA815_37650}

Cumulative graph for MligTC455_17631

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.284 4.856 0.00327 0.18415
RegionR2 1.244 4.856 0.00154 0.02935
RegionR3 0.375 4.856 0.26464 0.80946
RegionR4 0.593 4.856 0.12115 0.34882
RegionR5 -0.442 4.856 0.22816 0.53390
RegionR6 0.219 4.856 0.52008 1.00000
RegionR7 0.74 4.856 0.04061 0.38537
RegionR8 0.556 4.856 0.18901 0.77942

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.295 4.856 0.18706 0.92745
RegenerationR2 -0.605 4.856 0.06284 0.41136
RegenerationR3 -0.617 4.856 0.10491 0.51274
RegenerationR4 -0.958 4.856 0.01187 0.16722
RegenerationR5 -0.358 4.856 0.34022 0.75807
RegenerationR6 -1.764 4.856 0.00010 0.00901
RegenerationBL -2.369 4.856 0.00006 0.00309
RegenerationTP 0.623 4.856 0.10572 0.50345


Genes with expression patterns similar to MligTC455_17631

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17631 1238 25.8 Mlig455_068095

Neo: -

Age: -

Region-enriched R2: 1.244/0.02935

Regeneration-depleted BL: -2.369
Regeneration-depleted R6: -1.764

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_068095 {REF} {Length: 2575} {TRANSSPLICED} {Pfam: DNA-binding nuclear phosphoprotein p8 [PF10195.11, score=28.1]} {Smed: dd_Smed_v6_713_0_1, dd_Smed_v6_713_0_1, [Score=42.7, Expect=6e-07]} {RNA1509_18275, RNA1509_20405, RNA1509_41679, RNA1509_41747, RNA1509_50124} {RNA1310_62289, RNA1509_18275, RNA1509_20405, RNA1509_41679, RNA1509_41747, RNA1509_50124} {RNA1509_18275, RNA1509_20405, RNA1509_41679, RNA1509_41747, RNA1509_50124, RNA815_37650}
2. MligTC455_48606 181 3.78 Mlig455_057120

Neo: -

Age: -

Region-enriched R2: 2.436/0.01920

 ENSA 2.48 0.770 - 0.750 0.960 - - Mlig455_057120 {REF} {Length: 3083} {TRANSSPLICED} {Pfam: cAMP-regulated phosphoprotein/endosulfine conserved region [PF04667.19, score=33.5]} {Human: ENSG00000143420, ENSA, endosulfine alpha, [RH, Score=79.7, Expect=2e-19]; ENSG00000128989, ARPP19, cAMP regulated phosphoprotein 19, [RH, Score=79.3, Expect=3e-19]} {Mouse: ENSMUSG00000038619, Ensa, endosulfine alpha, [RH, Score=80.9, Expect=4e-20]} {Dmel: FBgn0061515, endos, endosulfine, [RH, Score=67.8, Expect=4e-15]} {Smed: dd_Smed_v6_4126_0_2, dd_Smed_v6_4126_0_2, [Score=82.8, Expect=4e-21]} {RNA1509_39694} {RNA1310_16598, RNA1509_39694} {RNA1509_39694, RNA815_33532}
3. MligTC455_49956 359 7.48 Mlig455_038752

Neo: -

Age: -

Region-enriched R7: 2.608/0.00003

 CHRNA6 1.772 - - - 0.817 - 0.955 Mlig455_038752 {REF} {Length: 3206} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=250.2]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=225.4]} {Human: ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=392, Expect=2e-131]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=385, Expect=2e-128]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=373, Expect=2e-123]} {Mouse: ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=391, Expect=5e-131]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=386, Expect=5e-129]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=374, Expect=3e-124]} {Dmel: FBgn0000038, nAChRbeta1, nicotinic Acetylcholine Receptor beta1, [RH, Score=511, Expect=8e-178]} {Celegans: WBGene00000043, acr-3, Acetylcholine receptor subunit beta-type acr-3, [RH, Score=424, Expect=4e-144]} {Smed: dd_Smed_v6_12535_0_1, dd_Smed_v6_12535_0_1, [RH, Score=482, Expect=1e-165]} {RNA1509_36865} {RNA1310_10120, RNA1509_36865} {RNA1509_36865, RNA815_4108}
4. MligTC455_21526 556 11.59 Mlig455_052730

Neo: -

Age: Up-Down-Down

 SLC26A5 1.752 - - 0.793 0.959 - - Mlig455_052730 {REF} {Length: 4391} {Pfam: Sulfate permease family [PF00916.22, score=264.3]; STAS domain [PF01740.23, score=80.1]} {Human: ENSG00000170615, SLC26A5, solute carrier family 26 member 5, [Score=340, Expect=3e-103]} {Mouse: ENSMUSG00000029015, Slc26a5, solute carrier family 26, member 5, [Score=340, Expect=2e-103]} {Dmel: FBgn0036770, Prestin, [Score=234, Expect=4e-65]} {Celegans: WBGene00013963, sulp-8, Anion transporter SULP-8a; Anion transporter SULP-8b; SULfate Permease family, [Score=229, Expect=2e-64]} {Smed: dd_Smed_v6_8150_0_1, dd_Smed_v6_8150_0_1, [Score=389, Expect=3e-121]} {RNA1509_2157, RNA1509_36681, RNA1509_45989, RNA1509_52408} {RNA1310_11012, RNA1509_2157, RNA1509_36681, RNA1509_45989, RNA1509_52408} {RNA1509_2157, RNA1509_36681, RNA1509_45989, RNA1509_52408, RNA815_1075.1}
5. MligTC455_33120 6187 128.89 Mlig455_017181, Mlig455_048149

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.363

 NME5 1.706 - - 0.752 0.954 - -

Mlig455_017181 {REF} {Length: 1436} {Pfam: Nucleoside diphosphate kinase [PF00334.21, score=145.9]; Dpy-30 motif [PF05186.15, score=57.3]} {Human: ENSG00000112981, NME5, NME/NM23 family member 5, [RH, Score=293, Expect=1e-101]} {Mouse: ENSMUSG00000035984, Nme5, NME/NM23 family member 5, [RH, Score=280, Expect=3e-96]} {Dmel: FBgn0030573, nmdyn-D6, [RH, Score=115, Expect=1e-32]} {Celegans: WBGene00009119, ndk-1, Nucleoside diphosphate kinase, [Score=79.3, Expect=1e-18]} {Smed: dd_Smed_v6_3890_0_1, dd_Smed_v6_3890_0_1, [RH, Score=286, Expect=3e-99]} {RNA1509_23903, RNA1509_35434, RNA1509_38470, RNA1509_46917, RNA1509_49050, RNA1509_56836, RNA1509_6936} {RNA1310_24996.1, RNA1509_23903, RNA1509_35434, RNA1509_38470, RNA1509_46917, RNA1509_49050, RNA1509_56836, RNA1509_6936} {RNA1509_23903, RNA1509_35434, RNA1509_38470, RNA1509_46917, RNA1509_49050, RNA1509_56836, RNA1509_6936, RNA815_10674}

Mlig455_048149 {REF} {Length: 1386} {Pfam: Nucleoside diphosphate kinase [PF00334.21, score=145.9]; Dpy-30 motif [PF05186.15, score=57.3]} {Human: ENSG00000112981, NME5, NME/NM23 family member 5, [RH, Score=293, Expect=1e-101]} {Mouse: ENSMUSG00000035984, Nme5, NME/NM23 family member 5, [RH, Score=280, Expect=3e-96]} {Dmel: FBgn0030573, nmdyn-D6, [RH, Score=115, Expect=1e-32]} {Celegans: WBGene00009119, ndk-1, Nucleoside diphosphate kinase, [Score=79.3, Expect=1e-18]} {Smed: dd_Smed_v6_3890_0_1, dd_Smed_v6_3890_0_1, [RH, Score=286, Expect=3e-99]} {RNA1509_23903, RNA1509_42346} {RNA1310_24996.1, RNA1509_42346} {RNA1509_42346, RNA815_10674}
6. MligTC455_53757 6476 134.92 Mlig455_030837

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.284

Regeneration-downregulated BL: -1.497

Regeneration-depleted BL: -1.497

 1.699 - - - 0.964 0.735 - Mlig455_030837 {REF} {Length: 1826} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_16729, RNA1509_27739, RNA1509_55309, RNA1509_945} {RNA1310_12502.1, RNA1509_16729, RNA1509_27739, RNA1509_55309} {RNA1509_16729, RNA1509_27739, RNA1509_55309, RNA815_6164.1}
7. MligTC455_44910 1185 24.68 Mlig455_014380

Neo: -

Age: Down-Up-Up

 1.672 - - - 0.716 0.956 - Mlig455_014380 {REF} {Length: 2014} {RNA1509_23540} {RNA1310_33807, RNA1509_23540} {RNA1509_23540, RNA815_16127}
8. MligTC455_08794 15 0.31 Mlig455_055241

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_055241 {REF} {Length: 292} {NoTransDecoderORF} {RNA1509_55672} {RNA1310_142492} {RNA815_57567}
9. MligTC455_23254 56 1.16 Mlig455_020486

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_020486 {REF} {Length: 1473} {TRANSSPLICED} {RNA1310_31763} {RNA815_30486}
10. MligTC455_27808 86 1.79 Mlig455_014544

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_014544 {REF} {Length: 4665} {Pfam: Poxvirus A32 protein [PF04665.14, score=29.6]} {Celegans: WBGene00021498, Y40C7B.1, [RH, Score=65.5, Expect=5e-12]} {RNA1509_5514} {RNA1310_683.1} {RNA815_1542.1}
11. MligTC455_45195 9516 198.25 Mlig455_020734, Mlig455_020806

Neo: -

Age: logFC(26M/2M)=0.328

Regeneration-downregulated BL: -1.150

Regeneration-depleted BL: -1.150

 TAX1BP1 0.957 - - - 0.957 - -

Mlig455_020734 {REF} {Length: 2997} {TRANSSPLICED} {Pfam: SKICH domain [PF17751.3, score=40.3]; Crescentin protein [PF19220.2, score=21.6]} {Human: ENSG00000106052, TAX1BP1, Tax1 binding protein 1, [RH, Score=85.5, Expect=8e-17]} {Mouse: ENSMUSG00000004535, Tax1bp1, Tax1 (human T cell leukemia virus type I) binding protein 1, [Score=79.3, Expect=5e-15]} {RNA1509_27147} {RNA1310_19827} {RNA815_2045}

Mlig455_020806 {REF} {Length: 3001} {TRANSSPLICED} {Pfam: SKICH domain [PF17751.3, score=40.8]; Crescentin protein [PF19220.2, score=22.3]} {Human: ENSG00000106052, TAX1BP1, Tax1 binding protein 1, [RH, Score=87.0, Expect=3e-17]} {Mouse: ENSMUSG00000004535, Tax1bp1, Tax1 (human T cell leukemia virus type I) binding protein 1, [RH, Score=80.5, Expect=2e-15]} {RNA1509_33506, RNA1509_6331} {RNA1310_19827, RNA1509_33506} {RNA1509_33506, RNA815_2045}
12. MligTC455_28600 90 1.88 Mlig455_010981

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_010981 {REF} {Length: 5815} {RNA1509_37486} {RNA1310_30004.1} {RNA815_31633}
13. MligTC455_44428 3009 62.7 Mlig455_008256, Mlig455_040636

Neo: -

Age: Down-Up-Down

Regeneration-downregulated BL: -1.749

Regeneration-depleted BL: -1.749

 0.955 - - - 0.955 - -

Mlig455_008256 {REF} {Length: 913} {TRANSSPLICED} {RNA1509_35393, RNA1509_38575, RNA1509_39483, RNA1509_41638, RNA1509_57564} {RNA1310_50507, RNA1509_35393, RNA1509_38575, RNA1509_41638, RNA1509_57564} {RNA1509_35393, RNA1509_38575, RNA1509_41638, RNA1509_57564, RNA815_25701}

Mlig455_040636 {REF} {Length: 627} {RNA1509_41826} {RNA1310_50507} {RNA815_25701}
14. MligTC455_52100 223 4.64 Mlig455_067262

Neo: -

Age: Down-Up-Down

 0.955 - - - - 0.955 - Mlig455_067262 {REF} {Length: 969} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=97.1]} {Dmel: FBgn0034583, CG10527, [Score=75.9, Expect=1e-16]} {Smed: dd_Smed_v6_766_0_1, dd_Smed_v6_766_0_1, [Score=121, Expect=8e-36]} {RNA1310_43030} {RNA815_25924}
15. MligTC455_19067 17 0.36 Mlig455_042583

Neo: -

Age: Up-Down-Down

 0.954 - - - - 0.954 - Mlig455_042583 {REF} {Length: 4759} {RNA1509_46753} {RNA1310_28678} {RNA815_23315}
16. MligTC455_18508 41 0.86 Mlig455_060396

Neo: -

Age: -

 AK8 0.953 - - - - 0.953 - Mlig455_060396 {REF} {Length: 2930} {Pfam: Adenylate kinase [PF00406.24, score=158.7]; AAA domain [PF13207.8, score=82.1]; AAA domain [PF13238.8, score=32.7]; Hydin Adenylate kinase-like domain [PF17213.5, score=30.1]; AAA domain [PF13671.8, score=27.7]; Regulatory subunit of type II PKA R-subunit [PF02197.19, score=23.1]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=19.2]} {Human: ENSG00000165695, AK8, adenylate kinase 8, [RH, Score=413, Expect=6e-139]} {Mouse: ENSMUSG00000026807, Ak8, adenylate kinase 8, [RH, Score=407, Expect=2e-136]} {Dmel: FBgn0283494, Adk2, Adenylate kinase 2, [Score=105, Expect=2e-25]} {Celegans: WBGene00002879, let-754, Adenylate kinase, [Score=100, Expect=1e-23]} {Smed: dd_Smed_v6_7317_0_1, dd_Smed_v6_7317_0_1, [RH, Score=427, Expect=9e-145]} {RNA1509_19043} {RNA1310_18637.1} {RNA815_7186}
17. MligTC455_30122 93 1.94 Mlig455_030832

Neo: -

Age: -

 NPFFR2 0.953 - - - - 0.953 - Mlig455_030832 {REF} {Length: 5210} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=176.1]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=50.9]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=25.4]; Olfactory receptor [PF13853.8, score=23.6]} {Human: ENSG00000056291, NPFFR2, neuropeptide FF receptor 2, [Score=158, Expect=2e-43]} {Mouse: ENSMUSG00000035528, Npffr2, neuropeptide FF receptor 2, [Score=155, Expect=3e-42]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [RH, Score=199, Expect=2e-56]} {Celegans: WBGene00008278, npr-10, NeuroPeptide Receptor family, [Score=125, Expect=6e-32]} {Smed: dd_Smed_v6_45004_0_1, dd_Smed_v6_45004_0_1, [RH, Score=206, Expect=3e-62]} {RNA1509_19670} {RNA1310_13919, RNA1509_19670} {RNA1509_19670, RNA815_23469.1}
18. MligTC455_33817 333 6.94 Mlig455_015731, Mlig455_049434

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 4.195

 0.953 - - - - 0.953 -

Mlig455_015731 {REF} {Length: 1442} {Smed: dd_Smed_v6_21423_0_4, dd_Smed_v6_21423_0_4, [Score=54.7, Expect=8e-10]} {RNA1509_39158} {RNA1310_48634, RNA1509_39158} {RNA1509_39158, RNA815_30617}

Mlig455_049434 {REF} {Length: 1552} {NoTransDecoderORF} {RNA1509_39158} {RNA1310_48634} {RNA815_30617}
19. MligTC455_20542 5447 113.47 Mlig455_003023, Mlig455_003318

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.611

Region-enriched R8: 1.173/0.00545

 KY 0.951 - - - - - 0.951

Mlig455_003023 {REF} {Length: 19522} {Pfam: Transglutaminase-like superfamily [PF01841.21, score=22.4]} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=79.7, Expect=1e-13]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=77.8, Expect=3e-13]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=103, Expect=4e-21]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=90.5, Expect=2e-17]} {Smed: dd_Smed_v6_1109_0_1, dd_Smed_v6_1109_0_1, [Score=290, Expect=4e-80]} {RNA1509_704} {RNA1310_3180} {RNA815_1159.1}

Mlig455_003318 {REF} {Length: 19222} {Pfam: Transglutaminase-like superfamily [PF01841.21, score=22.9]} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=80.5, Expect=7e-14]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=75.5, Expect=2e-12]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=99.8, Expect=5e-20]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=90.9, Expect=1e-17]} {Smed: dd_Smed_v6_1109_0_1, dd_Smed_v6_1109_0_1, [Score=292, Expect=8e-81]} {RNA1509_2987, RNA1509_37803, RNA1509_704} {RNA1310_3180, RNA1509_2987, RNA1509_37803} {RNA1509_2987, RNA1509_37803, RNA815_1159.1}
20. MligTC455_29474 48 1 Mlig455_037282

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_037282 {REF} {Length: 586} {NoTransDecoderORF} {RNA1509_43957} {RNA1310_26620} {RNA815_37878}
21. MligTC455_27639 341 7.1 Mlig455_022965

Neo: -

Age: logFC(26M/2M)=-0.430

 CLUAP1 0.95 - - - - - 0.950 Mlig455_022965 {REF} {Length: 2072} {Pfam: Clusterin-associated protein-1 [PF10234.11, score=358.0]} {Human: ENSG00000103351, CLUAP1, clusterin associated protein 1, [RH, Score=332, Expect=1e-110]} {Mouse: ENSMUSG00000014232, Cluap1, clusterin associated protein 1, [RH, Score=330, Expect=8e-110]} {Dmel: FBgn0031196, CG17599, [RH, Score=135, Expect=1e-34]} {Celegans: WBGene00001119, dyf-3, Clusterin-associated protein 1 homolog, [RH, Score=215, Expect=1e-65]} {Smed: dd_Smed_v6_8287_0_1, dd_Smed_v6_8287_0_1, [RH, Score=333, Expect=2e-110]} {RNA1509_12489, RNA1509_14292} {RNA1310_15979, RNA1509_12489} {RNA1509_12489, RNA815_6417.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA