TomoSeq data search

Data search

Results for MligTC455_17820

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_17820

290

6.05

Mlig455_012856

Neo: -

Age: -

Mlig455_012856 {REF} {Length: 1613} {Pfam: Methyl-accepting chemotaxis protein (MCP) signalling domain [PF00015.23, score=18.7]} {RNA1509_25600} {RNA1310_22873, RNA1509_25600} {RNA1509_25600, RNA815_10708}

Cumulative graph for MligTC455_17820

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.403	3.016	0.22078	0.86384
RegionR2	0.151	3.016	0.79672	1.00000
RegionR3	0.624	3.016	0.50681	0.99712
RegionR4	1.203	3.016	0.24232	0.53975
RegionR5	-0.252	3.016	0.91877	1.00000
RegionR6	0.827	3.016	0.37368	0.95448
RegionR7	0.862	3.016	0.40987	1.00000
RegionR8	1.987	3.016	0.04413	0.41137

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.96	3.016	0.99992	1.00000
RegenerationR2	-0.441	3.016	0.50088	0.87195
RegenerationR3	-0.608	3.016	0.37586	0.78759
RegenerationR4	-0.528	3.016	0.46375	0.84930
RegenerationR5	0.172	3.016	0.79942	0.98823
RegenerationR6	-0.364	3.016	0.60001	0.86879
RegenerationBL	-0.777	3.016	0.29462	0.65699
RegenerationTP	-0.269	3.016	0.71889	1.00000

Genes with expression patterns similar to MligTC455_17820

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_17820	290	6.05	Mlig455_012856	Neo: - Age: -		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_012856 {REF} {Length: 1613} {Pfam: Methyl-accepting chemotaxis protein (MCP) signalling domain [PF00015.23, score=18.7]} {RNA1509_25600} {RNA1310_22873, RNA1509_25600} {RNA1509_25600, RNA815_10708}
2.	MligTC455_41139	569	11.86	Mlig455_001282	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.661	SLC6A3	1.796	0.952	-	-	-	0.844	-	Mlig455_001282 {REF} {Length: 2522} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=533.2]} {Human: ENSG00000142319, SLC6A3, solute carrier family 6 member 3, [Score=451, Expect=1e-150]; ENSG00000276996, SLC6A3, solute carrier family 6 member 3, [Score=451, Expect=1e-150]; ENSG00000103546, SLC6A2, solute carrier family 6 member 2, [Score=439, Expect=8e-146]} {Mouse: ENSMUSG00000021609, Slc6a3, solute carrier family 6 (neurotransmitter transporter, dopamine), member 3, [Score=452, Expect=3e-151]; ENSMUSG00000055368, Slc6a2, solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2, [Score=443, Expect=9e-148]} {Dmel: FBgn0010414, SerT, Serotonin transporter, [Score=420, Expect=8e-139]} {Celegans: WBGene00003387, mod-5, Transporter, [Score=371, Expect=1e-119]} {Smed: dd_Smed_v6_22486_0_1, dd_Smed_v6_22486_0_1, [Score=497, Expect=1e-168]} {RNA1509_9639} {RNA1310_4480.1, RNA1509_9639} {RNA1509_9639, RNA815_1493}
3.	MligTC455_19608	1127	23.48	Mlig455_049920	Neo: - Age: Down-Down-Up Region-enriched R4: 1.337/0.01716	NOTCH3	1.715	0.951	0.764	-	-	-	-	Mlig455_049920 {REF} {Length: 1363} {Human: ENSG00000074181, NOTCH3, notch 3, [Score=52.4, Expect=1e-07]} {Mouse: ENSMUSG00000038146, Notch3, notch 3, [Score=48.9, Expect=1e-06]; ENSMUSG00000070047, Fat1, FAT atypical cadherin 1, [Score=46.6, Expect=8e-06]} {Dmel: FBgn0259140, CG42255, [Score=47.4, Expect=3e-06]} {RNA1509_35808} {RNA1310_29607.1} {RNA815_12976.1}
4.	MligTC455_16991	437	9.09	Mlig455_057989	Neo: - Age: Up-Up-Down Regeneration-downregulated BL: -7.705 Regeneration-depleted BL: -7.705		0.975	0.975	-	-	-	-	-	Mlig455_057989 {REF} {Length: 4840} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=124.1]; WSC domain [PF01822.21, score=40.4]} {Celegans: WBGene00003168, mec-4, Degenerin mec-4, [Score=64.3, Expect=3e-10]} {Smed: dd_Smed_v6_15195_0_1, dd_Smed_v6_15195_0_1, [Score=65.1, Expect=1e-10]} {RNA1509_20328} {RNA1310_3478} {RNA815_19382.2}
5.	MligTC455_45876	77	1.59	Mlig455_017599, Mlig455_058883	Neo: - Age: -		0.974	0.974	-	-	-	-	-	Mlig455_017599 {REF} {Length: 3586} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=27.3]} {Celegans: WBGene00019444, frpr-11, FMRFamide Peptide Receptor family, [Score=63.5, Expect=4e-11]} {RNA1310_90357} Mlig455_058883 {REF} {Length: 2226} {RNA1310_90357}
6.	MligTC455_39348	410	8.54	Mlig455_054310	Neo: - Age: -	ERG	0.971	0.971	-	-	-	-	-	Mlig455_054310 {REF} {Length: 2524} {Pfam: Ets-domain [PF00178.24, score=93.5]} {Human: ENSG00000157554, ERG, ERG, ETS transcription factor, [Score=92.4, Expect=4e-20]; ENSG00000117036, ETV3, ETS variant 3, [Score=92.0, Expect=8e-20]; ENSG00000151702, FLI1, Fli-1 proto-oncogene, ETS transcription factor, [Score=90.1, Expect=2e-19]; ENSG00000253831, ETV3L, ETS variant 3 like, [Score=90.1, Expect=1e-19]; ENSG00000135373, EHF, ETS homologous factor, [Score=87.8, Expect=5e-19]} {Mouse: ENSMUSG00000040732, Erg, ETS transcription factor, [Score=92.4, Expect=3e-20]; ENSMUSG00000003382, Etv3, ets variant 3, [Score=91.7, Expect=6e-20]; ENSMUSG00000016087, Fli1, Friend leukemia integration 1, [Score=90.1, Expect=2e-19]} {Dmel: FBgn0005660, Ets21C, Ets at 21C, [Score=87.8, Expect=2e-19]} {Celegans: WBGene00016600, ets-5, ETS class transcription factor, [Score=87.0, Expect=6e-20]} {Smed: dd_Smed_v6_11113_0_1, dd_Smed_v6_11113_0_1, [Score=86.7, Expect=7e-19]} {RNA1509_27900, RNA1509_55575} {RNA1310_26221, RNA1509_27900} {RNA1509_27900, RNA815_19654}
7.	MligTC455_30533	175	3.66	Mlig455_011508	Neo: - Age: logFC(26M/2M)=-0.396	ODF2	0.966	0.966	-	-	-	-	-	Mlig455_011508 {REF} {Length: 3294} {TRANSSPLICED} {Human: ENSG00000136811, ODF2, outer dense fiber of sperm tails 2, [Score=109, Expect=5e-24]} {Mouse: ENSMUSG00000026790, Odf2, outer dense fiber of sperm tails 2, [Score=109, Expect=4e-24]} {Smed: dd_Smed_v6_3609_0_2, dd_Smed_v6_3609_0_2, [Score=89.4, Expect=3e-18]} {RNA1509_12480} {RNA1310_8290} {RNA815_8319}
8.	MligTC455_36611	250	5.21	Mlig455_063856	Neo: - Age: -		0.964	0.964	-	-	-	-	-	Mlig455_063856 {REF} {Length: 1172} {RNA1509_17799} {RNA1310_27750.1} {RNA815_14952}
9.	MligTC455_13329	95	1.98	Mlig455_009198	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-1.124		0.963	0.963	-	-	-	-	-	Mlig455_009198 {REF} {Length: 2007} {RNA1509_22077, RNA1509_32545} {RNA1310_29047.1, RNA1509_22077, RNA1509_32545} {RNA1509_22077, RNA1509_32545, RNA815_17550}
10.	MligTC455_28491	358	7.45	Mlig455_032457, Mlig455_050292	Neo: - Age: -		0.96	0.960	-	-	-	-	-	Mlig455_032457 {REF} {Length: 758} {RNA1509_1285} {RNA1310_33649.3} {RNA815_57812} Mlig455_050292 {REF} {Length: 5872} {RNA1509_29949, RNA1509_31311, RNA1509_41534} {RNA1310_35295, RNA1509_29949, RNA1509_31311, RNA1509_41534} {RNA1509_29949, RNA1509_31311, RNA1509_41534, RNA815_24386}
11.	MligTC455_46251	416	8.67	Mlig455_018602, Mlig455_018616	Neo: - Age: Down-Up-Down		0.956	0.956	-	-	-	-	-	Mlig455_018602 {REF} {Length: 2125} {TRANSSPLICED} {RNA1509_38360} {RNA1310_20819.1} {RNA815_16997} Mlig455_018616 {REF} {Length: 2099} {TRANSSPLICED} {RNA1509_38360} {RNA1310_20819.1, RNA1509_38360} {RNA1509_38360, RNA815_16997}
12.	MligTC455_23913	278	5.79	Mlig455_046225	Neo: - Age: Up-Down-Down	RIMBP2	0.953	0.953	-	-	-	-	-	Mlig455_046225 {REF} {Length: 9740} {TRANSSPLICED} {Pfam: Variant SH3 domain [PF14604.8, score=38.7]; Variant SH3 domain [PF07653.19, score=31.8]; SH3 domain [PF00018.30, score=22.3]; Fibronectin type III domain [PF00041.23, score=21.9]} {Human: ENSG00000060709, RIMBP2, RIMS binding protein 2, [Score=181, Expect=7e-46]; ENSG00000005379, TSPOAP1, TSPO associated protein 1, [Score=173, Expect=2e-42]} {Mouse: ENSMUSG00000029420, Rimbp2, RIMS binding protein 2, [Score=177, Expect=2e-44]} {Dmel: FBgn0262483, Rbp, RIM-binding protein, [Score=185, Expect=1e-46]} {Celegans: WBGene00006513, rimb-1, RIM Binding protein, [Score=184, Expect=1e-46]} {Smed: dd_Smed_v6_9824_0_1, dd_Smed_v6_9824_0_1, [Score=52.0, Expect=4e-06]} {RNA1509_26550, RNA1509_57848} {RNA1310_5419.1, RNA1509_26550, RNA1509_57848} {RNA1509_26550, RNA1509_57848, RNA815_3967.1}
13.	MligTC455_48093	83	1.73	Mlig455_070622	Neo: - Age: Down-Down-Up	FYN	0.953	-	-	0.953	-	-	-	Mlig455_070622 {REF} {Length: 2880} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=306.1]; Protein kinase domain [PF00069.27, score=156.2]; SH2 domain [PF00017.26, score=72.4]; SH3 domain [PF00018.30, score=40.0]; Variant SH3 domain [PF14604.8, score=36.0]; Haspin like kinase domain [PF12330.10, score=20.9]; ABC1 atypical kinase-like domain [PF03109.18, score=19.0]; Variant SH3 domain [PF07653.19, score=18.7]} {Human: ENSG00000010810, FYN, FYN proto-oncogene, Src family tyrosine kinase, [Score=481, Expect=4e-163]; ENSG00000111816, FRK, fyn related Src family tyrosine kinase, [Score=463, Expect=2e-156]; ENSG00000197122, SRC, SRC proto-oncogene, non-receptor tyrosine kinase, [Score=457, Expect=7e-154]} {Mouse: ENSMUSG00000019843, Fyn, Fyn proto-oncogene, [Score=482, Expect=1e-163]; ENSMUSG00000019779, Frk, fyn-related kinase, [Score=462, Expect=6e-156]} {Dmel: FBgn0264959, Src42A, Src oncogene at 42A, [Score=469, Expect=5e-159]} {Celegans: WBGene00005077, src-1, Tyrosine protein-kinase src-1, [Score=455, Expect=4e-154]} {Smed: dd_Smed_v6_6272_0_1, dd_Smed_v6_6272_0_1, [RH, Score=545, Expect=0.0]} {RNA1509_40287} {RNA1310_11764.1} {RNA815_4295}
14.	MligTC455_23937	107	2.23	Mlig455_044625	Neo: - Age: -	TRPM3	0.95	0.950	-	-	-	-	-	Mlig455_044625 {REF} {Length: 5687} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=80.1]; Ankyrin repeats (3 copies) [PF12796.9, score=74.7]; Ankyrin repeat [PF13606.8, score=59.8]; Ion transport protein [PF00520.33, score=56.9]; Ankyrin repeat [PF00023.32, score=50.8]; Ankyrin repeats (many copies) [PF13857.8, score=38.8]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=139, Expect=1e-32]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=135, Expect=4e-31]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=135, Expect=4e-31]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=142, Expect=2e-33]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=136, Expect=1e-31]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=111, Expect=4e-24]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=112, Expect=2e-24]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=188, Expect=2e-48]} {RNA1509_32799} {RNA1310_1742.1} {RNA815_1771}
15.	MligTC455_23938	109	2.26	Mlig455_044682	Neo: - Age: logFC(26M/2M)=0.355	TRPM3	0.95	0.950	-	-	-	-	-	Mlig455_044682 {REF} {Length: 6333} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=80.4]; Ankyrin repeats (3 copies) [PF12796.9, score=74.8]; Ankyrin repeat [PF13606.8, score=59.5]; Ion transport protein [PF00520.33, score=57.5]; Ankyrin repeat [PF00023.32, score=51.1]; Ankyrin repeats (many copies) [PF13857.8, score=38.9]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=139, Expect=2e-32]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=139, Expect=2e-32]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=139, Expect=2e-32]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=141, Expect=3e-33]; ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=140, Expect=4e-33]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=112, Expect=2e-24]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=111, Expect=2e-24]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=192, Expect=2e-49]} {RNA1509_19611, RNA1509_32799} {RNA1310_1742.1, RNA1509_19611, RNA1509_32799} {RNA1509_19611, RNA1509_32799, RNA815_1771}
16.	MligTC455_36610	382	7.95	Mlig455_038889, Mlig455_057428	Neo: - Age: logFC(26M/2M)=-0.955	PJA2	0.95	0.950	-	-	-	-	-	Mlig455_038889 {REF} {Length: 1874} {Pfam: Ring finger domain [PF13639.8, score=34.9]; RING-H2 zinc finger domain [PF12678.9, score=27.2]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.4]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=20.6]; zinc-RING finger domain [PF14634.8, score=18.8]; Rtf2 RING-finger [PF04641.14, score=18.0]} {Dmel: FBgn0034314, nopo, no poles, [Score=57.8, Expect=6e-10]} {RNA1509_17799} {RNA1310_27750.1} {RNA815_14952} Mlig455_057428 {REF} {Length: 1314} {Pfam: Ring finger domain [PF13639.8, score=38.2]; RING-H2 zinc finger domain [PF12678.9, score=30.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=25.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=20.6]; zinc-RING finger domain [PF14634.8, score=20.6]; Rtf2 RING-finger [PF04641.14, score=19.4]} {Human: ENSG00000198961, PJA2, praja ring finger ubiquitin ligase 2, [Score=46.2, Expect=1e-05]} {Mouse: ENSMUSG00000024083, Pja2, praja ring finger ubiquitin ligase 2, [Score=46.2, Expect=1e-05]} {Dmel: FBgn0034314, nopo, no poles, [Score=59.3, Expect=2e-10]} {RNA1509_17799} {RNA1310_27750.1, RNA1509_17799} {RNA1509_17799, RNA815_14952}
17.	MligTC455_40486	234	4.87	Mlig455_043769	Neo: - Age: logFC(26M/2M)=-0.327		0.95	0.950	-	-	-	-	-	Mlig455_043769 {REF} {Length: 6309} {Pfam: C2 domain in Dock180 and Zizimin proteins [PF14429.8, score=34.3]} {Mouse: ENSMUSG00000035954, Dock4, dedicator of cytokinesis 4, [Score=52.8, Expect=4e-06]} {RNA1509_19446} {RNA1310_1320, RNA1509_19446} {RNA1509_19446, RNA815_27032}

Berezikov Lab - 2020-2021 © ERIBA