M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17978

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17978 27 0.56 Mlig455_036611

Neo: Germline

Age: -

 Mlig455_036611 {REF} {Length: 722} {NoTransDecoderORF} {RNA1509_57957} {RNA1310_23575} {RNA815_9301.2}

Cumulative graph for MligTC455_17978

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.748 0.911 0.99984 1.00000
RegionR2 2.262 0.911 0.75259 1.00000
RegionR3 -0.081 0.911 0.99962 1.00000
RegionR4 -1.657 0.911 0.99967 1.00000
RegionR5 0.926 0.911 0.29354 0.62637
RegionR6 1.031 0.911 0.56058 1.00000
RegionR7 2.535 0.911 0.21295 0.82886
RegionR8 -2.268 0.911 0.99959 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.757 0.911 1.00000 1.00000
RegenerationR2 0.154 0.911 0.85518 1.00000
RegenerationR3 1.022 0.911 0.52008 0.86678
RegenerationR4 2.04 0.911 0.25353 0.70160
RegenerationR5 -1.976 0.911 0.24269 0.67629
RegenerationR6 -3.134 0.911 0.14073 0.45950
RegenerationBL 0.263 0.911 0.95043 1.00000
RegenerationTP 1.29 0.911 0.84345 1.00000


Genes with expression patterns similar to MligTC455_17978

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17978 27 0.56 Mlig455_036611

Neo: Germline

Age: -

 2 - - - 1.000 1.000 - Mlig455_036611 {REF} {Length: 722} {NoTransDecoderORF} {RNA1509_57957} {RNA1310_23575} {RNA815_9301.2}
2. MligTC455_12878 91 1.89 Mlig455_025598, Mlig455_052895

Neo: -

Age: -

 0.975 - - - 0.975 - -

Mlig455_025598 {REF} {Length: 345} {NoTransDecoderORF} {RNA1310_75777}

Mlig455_052895 {REF} {Length: 467} {NoTransDecoderORF} {RNA1310_75777}
3. MligTC455_25408 35 0.72 Mlig455_026127

Neo: -

Age: Up-Down-Down

 0.975 - - - 0.975 - - Mlig455_026127 {REF} {Length: 2873} {Pfam: Variant SH3 domain [PF07653.19, score=21.9]; RIM-binding protein of the cytomatrix active zone [PF10174.11, score=16.9]} {Mouse: ENSMUSG00000034156, Tspoap1, TSPO associated protein 1, [Score=55.1, Expect=4e-07]} {Smed: dd_Smed_v6_14584_0_1, dd_Smed_v6_14584_0_1, [Score=140, Expect=5e-35]} {RNA1509_45271} {RNA1310_5741} {RNA815_46868}
4. MligTC455_42044 14 0.28 Mlig455_036295

Neo: -

Age: -

 0.975 - - - 0.975 - - Mlig455_036295 {REF} {Length: 1775} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=32.8]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [Score=62.8, Expect=8e-11]} {RNA1310_147392}
5. MligTC455_47984 3 0.07 Mlig455_069620, Mlig455_069621

Neo: -

Age: -

 KREMEN1, WSCD2 0.975 - - - 0.975 - -

Mlig455_069620 {REF} {Length: 778} {Pfam: WSC domain [PF01822.21, score=54.6]} {Human: ENSG00000183762, KREMEN1, kringle containing transmembrane protein 1, [Score=54.7, Expect=5e-09]} {Mouse: ENSMUSG00000020393, Kremen1, kringle containing transmembrane protein 1, [Score=55.8, Expect=1e-09]; ENSMUSG00000020811, Wscd1, WSC domain containing 1, [Score=53.1, Expect=1e-08]} {RNA1509_46267} {RNA1310_43993} {RNA815_32275.1}

Mlig455_069621 {REF} {Length: 878} {Pfam: WSC domain [PF01822.21, score=51.4]; PAN domain [PF00024.28, score=24.6]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=53.9, Expect=7e-08]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=53.9, Expect=5e-08]; ENSMUSG00000020811, Wscd1, WSC domain containing 1, [Score=51.6, Expect=3e-07]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=52.4, Expect=1e-07]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=49.7, Expect=8e-07]} {RNA1509_46267} {RNA1310_58556} {RNA815_42573}
6. MligTC455_39500 113 2.35 Mlig455_032931, Mlig455_032946

Neo: -

Age: -

Region-enriched R2: 4.858/0.03664

 0.972 - - - 0.972 - -

Mlig455_032931 {REF} {Length: 1361} {Smed: dd_Smed_v6_10177_0_1, dd_Smed_v6_10177_0_1, [Score=60.5, Expect=4e-12]} {RNA1509_58254} {RNA1310_28096.1} {RNA815_22625}

Mlig455_032946 {REF} {Length: 1307} {Pfam: Domain of unknown function (DUF1330) [PF07045.13, score=19.0]} {Smed: dd_Smed_v6_10177_0_1, dd_Smed_v6_10177_0_1, [RH, Score=161, Expect=7e-50]} {RNA1509_58254} {RNA1310_28096.1, RNA1509_58254} {RNA1509_58254, RNA815_22625}
7. MligTC455_45910 20 0.42 Mlig455_068873

Neo: -

Age: -

 ANGPT4 0.97 - - - 0.970 - - Mlig455_068873 {REF} {Length: 1013} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=111.7]} {Human: ENSG00000101280, ANGPT4, angiopoietin 4, [Score=95.1, Expect=7e-22]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=91.3, Expect=2e-20]} {Mouse: ENSMUSG00000026835, Fcnb, ficolin B, [Score=93.6, Expect=3e-22]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=93.2, Expect=1e-21]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=90.9, Expect=1e-20]; ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=89.4, Expect=4e-20]} {Dmel: FBgn0087011, CG41520, [Score=87.0, Expect=2e-19]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=105, Expect=7e-26]} {RNA1310_32728} {RNA815_23388}
8. MligTC455_37747 25 0.53 Mlig455_024090

Neo: -

Age: -

Region-enriched R4: 6.148/0.01140

 0.967 - - - 0.967 - - Mlig455_024090 {REF} {Length: 223} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_11167.1} {RNA815_3258.1}
9. MligTC455_12117 38 0.78 Mlig455_013500

Neo: -

Age: -

 0.965 - - - 0.965 - - Mlig455_013500 {REF} {Length: 2103} {RNA1310_23237} {RNA815_45659}
10. MligTC455_51872 25 0.51 Mlig455_002762, Mlig455_063364

Neo: -

Age: -

 0.963 - - - 0.963 - -

Mlig455_002762 {REF} {Length: 1093} {RNA1310_80259} {RNA815_47710}

Mlig455_063364 {REF} {Length: 1091} {RNA1310_80259} {RNA815_47710}
11. MligTC455_14605 9 0.2 Mlig455_014306

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_014306 {REF} {Length: 2195} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=87.6]} {Dmel: FBgn0022382, Pka-R2, Protein kinase, cAMP-dependent, regulatory subunit type 2, [Score=52.8, Expect=3e-07]} {Smed: dd_Smed_v6_14355_0_1, dd_Smed_v6_14355_0_1, [Score=105, Expect=2e-24]} {RNA1310_19428.1} {RNA815_22602}
12. MligTC455_15189 30 0.63 Mlig455_068662

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_068662 {REF} {Length: 1194} {Pfam: Cupin-like domain [PF13621.8, score=39.8]} {Dmel: FBgn0038510, CG14331, [Score=148, Expect=1e-41]} {Celegans: WBGene00004205, psr-1, Bifunctional arginine demethylase and lysyl-hydroxylase psr-1, [Score=49.7, Expect=1e-06]} {Smed: dd_Smed_v6_8235_0_1, dd_Smed_v6_8235_0_1, [Score=139, Expect=5e-38]} {RNA1509_3781} {RNA1310_5604.1} {RNA815_2493.1}
13. MligTC455_16978 94 1.96 Mlig455_008844

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_008844 {REF} {Length: 895} {RNA1310_55666} {RNA815_36685}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA