Data search
Results for MligTC455_18133
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_18133 | 317 | 6.61 | Mlig455_000484 | Neo: - Age: - |
CRAMP1 | Mlig455_000484 {REF} {Length: 3860} {TRANSSPLICED} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=20.8]} {Human: ENSG00000007545, CRAMP1, cramped chromatin regulator homolog 1, [RH, Score=134, Expect=1e-31]} {Mouse: ENSMUSG00000038002, Cramp1l, cramped chromatin regulator homolog 1, [RH, Score=134, Expect=7e-32]} {Dmel: FBgn0000376, crm, cramped, [RH, Score=144, Expect=4e-35]} {Smed: dd_Smed_v6_6124_0_1, dd_Smed_v6_6124_0_1, [RH, Score=270, Expect=4e-79]} {RNA1509_20088} {RNA1310_14330} {RNA815_29842} |
Cumulative graph for MligTC455_18133
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -3.421 | 3.009 | 0.99987 | 1.00000 | |
| RegionR2 | 1.904 | 3.009 | 0.28592 | 0.67355 | |
| RegionR3 | 2.453 | 3.009 | 0.13250 | 0.62459 | |
| RegionR4 | 2.49 | 3.009 | 0.21802 | 0.50582 | |
| RegionR5 | 2.648 | 3.009 | 0.09057 | 0.28520 | |
| RegionR6 | 2.638 | 3.009 | 0.10569 | 0.59588 | |
| RegionR7 | -4.211 | 3.009 | 1.00000 | 1.00000 | |
| RegionR8 | -4.501 | 3.009 | 1.00000 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 5.867 | 3.009 | 0.28001 | 0.98080 | |
| RegenerationR2 | 2.032 | 3.009 | 0.20857 | 0.65601 | |
| RegenerationR3 | 2.444 | 3.009 | 0.15980 | 0.59248 | |
| RegenerationR4 | 2.168 | 3.009 | 0.27686 | 0.72234 | |
| RegenerationR5 | 1.597 | 3.009 | 0.34072 | 0.75837 | |
| RegenerationR6 | 0.909 | 3.009 | 0.59868 | 0.86787 | |
| RegenerationBL | 5.435 | 3.009 | 0.00772 | 0.08589 | |
| RegenerationTP | 7.579 | 3.009 | 0.00385 | 0.10343 |
Genes with expression patterns similar to MligTC455_18133
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_18133 | 317 | 6.61 | Mlig455_000484 | Neo: - Age: - |
CRAMP1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_000484 {REF} {Length: 3860} {TRANSSPLICED} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=20.8]} {Human: ENSG00000007545, CRAMP1, cramped chromatin regulator homolog 1, [RH, Score=134, Expect=1e-31]} {Mouse: ENSMUSG00000038002, Cramp1l, cramped chromatin regulator homolog 1, [RH, Score=134, Expect=7e-32]} {Dmel: FBgn0000376, crm, cramped, [RH, Score=144, Expect=4e-35]} {Smed: dd_Smed_v6_6124_0_1, dd_Smed_v6_6124_0_1, [RH, Score=270, Expect=4e-79]} {RNA1509_20088} {RNA1310_14330} {RNA815_29842} |
| 2. | MligTC455_29343 | 88 | 1.83 | Mlig455_063181 | Neo: - Age: Down-Up-Up |
SIDT1 | 0.982 | - | - | 0.982 | - | - | - | Mlig455_063181 {REF} {Length: 3188} {Pfam: dsRNA-gated channel SID-1 [PF13965.8, score=382.4]} {Human: ENSG00000072858, SIDT1, SID1 transmembrane family member 1, [Score=247, Expect=9e-70]} {Mouse: ENSMUSG00000022696, Sidt1, SID1 transmembrane family, member 1, [Score=232, Expect=1e-64]; ENSMUSG00000034908, Sidt2, SID1 transmembrane family, member 2, [Score=228, Expect=8e-63]} {Celegans: WBGene00006477, chup-1, CHolesterol UPtake associated, [Score=209, Expect=5e-57]} {Smed: dd_Smed_v6_6063_0_1, dd_Smed_v6_6063_0_1, [Score=242, Expect=8e-69]} {RNA1509_22787} {RNA1310_4984} {RNA815_5225} |
| 3. | MligTC455_50994 | 215 | 4.47 | Mlig455_005156 | Neo: Int S/G2/M Age: - |
PUF60 | 0.976 | - | - | - | 0.976 | - | - | Mlig455_005156 {REF} {Length: 2727} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=93.7]; RNA recognition motif [PF16367.7, score=29.7]} {Human: ENSG00000274081, PUF60, poly(U) binding splicing factor 60, [Score=226, Expect=4e-71]; ENSG00000179950, PUF60, poly(U) binding splicing factor 60, [Score=226, Expect=3e-71]} {Mouse: ENSMUSG00000002524, Puf60, poly-U binding splicing factor 60, [Score=226, Expect=1e-68]} {Dmel: FBgn0028577, hfp, half pint, [Score=221, Expect=2e-66]} {Celegans: WBGene00004389, rnp-6, RNP (RRM RNA binding domain) containing, [Score=181, Expect=3e-54]} {Smed: dd_Smed_v6_3853_0_3, dd_Smed_v6_3853_0_3, [Score=192, Expect=5e-57]} {RNA1509_19490} {RNA1310_20850, RNA1509_19490} {RNA1509_19490, RNA815_13982} |
| 4. | MligTC455_27545 | 130 | 2.71 | Mlig455_042355 | Neo: - Age: logFC(26M/2M)=-0.989 |
KREMEN1 | 0.969 | - | - | 0.969 | - | - | - | Mlig455_042355 {REF} {Length: 5033} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=63.6]; Ankyrin repeats (many copies) [PF13637.8, score=52.3]; WSC domain [PF01822.21, score=42.5]; Ankyrin repeat [PF13606.8, score=38.6]; Ankyrin repeat [PF00023.32, score=30.8]; Ankyrin repeats (many copies) [PF13857.8, score=26.9]} {Human: ENSG00000183762, KREMEN1, kringle containing transmembrane protein 1, [Score=50.1, Expect=3e-07]} {Mouse: ENSMUSG00000020393, Kremen1, kringle containing transmembrane protein 1, [Score=52.8, Expect=6e-08]} {RNA1509_48795} {RNA1310_1739} {RNA815_2547.1} |
| 5. | MligTC455_03723 | 113 | 2.36 | Mlig455_021604 | Neo: - Age: - |
POU6F2 | 0.952 | - | - | 0.952 | - | - | - | Mlig455_021604 {REF} {Length: 3537} {TRANSSPLICED} {Pfam: Pou domain - N-terminal to homeobox domain [PF00157.19, score=101.1]; Uncharacterized conserved domain (SAYSvFN) [PF10260.11, score=75.9]; Homeodomain [PF00046.31, score=59.3]} {Human: ENSG00000106536, POU6F2, POU class 6 homeobox 2, [RH, Score=247, Expect=1e-71]} {Mouse: ENSMUSG00000009734, Pou6f2, POU domain, class 6, transcription factor 2, [RH, Score=247, Expect=3e-72]} {Dmel: FBgn0261588, pdm3, pou domain motif 3, [RH, Score=243, Expect=2e-67]} {Celegans: WBGene00000441, ceh-18, Homeobox protein ceh-18, [Score=123, Expect=2e-29]} {Smed: dd_Smed_v6_13010_0_1, dd_Smed_v6_13010_0_1, [RH, Score=231, Expect=2e-67]} {RNA1509_23034, RNA1509_27833, RNA1509_54528} {RNA1310_7430, RNA1509_27833, RNA1509_54528} {RNA1509_27833, RNA1509_54528, RNA815_11647} |
| 6. | MligTC455_37124 | 221 | 4.61 | Mlig455_015377 | Neo: - Age: Up-Down-Up |
TPH1 | 0.95 | - | - | 0.950 | - | - | - | Mlig455_015377 {REF} {Length: 2026} {Pfam: Biopterin-dependent aromatic amino acid hydroxylase [PF00351.23, score=465.4]} {Human: ENSG00000129167, TPH1, tryptophan hydroxylase 1, [Score=400, Expect=8e-136]; ENSG00000139287, TPH2, tryptophan hydroxylase 2, [Score=390, Expect=4e-131]} {Mouse: ENSMUSG00000040046, Tph1, tryptophan hydroxylase 1, [Score=402, Expect=1e-136]; ENSMUSG00000006764, Tph2, tryptophan hydroxylase 2, [Score=389, Expect=3e-131]} {Dmel: FBgn0035187, Trh, trachealess, [Score=375, Expect=1e-124]} {Celegans: WBGene00006600, tph-1, TryPtophan Hydroxylase; Tryptophan hydroxylase, [Score=353, Expect=6e-118]} {Smed: dd_Smed_v6_8392_0_2, dd_Smed_v6_8392_0_2, [Score=408, Expect=4e-138]} {RNA1310_18054} {RNA815_7494} |
Berezikov Lab - 2020-2021 © ERIBA