M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_18264

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18264 254 5.29 Mlig455_070579

Neo: -

Age: Up-Down-Up

 MAP3K19 Mlig455_070579 {REF} {Length: 4210} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=189.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=129.6]; ABC1 atypical kinase-like domain [PF03109.18, score=34.1]; Fungal protein kinase [PF17667.3, score=29.1]; Kinase-like [PF14531.8, score=24.5]; Phosphotransferase enzyme family [PF01636.25, score=19.4]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=161, Expect=4e-42]; ENSG00000134602, STK26, serine/threonine kinase 26, [Score=154, Expect=2e-40]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=157, Expect=1e-40]; ENSMUSG00000031112, Stk26, serine/threonine kinase 26, [Score=154, Expect=2e-40]} {Dmel: FBgn0266465, GckIII, Germinal centre kinase III, [Score=152, Expect=2e-38]} {Celegans: WBGene00001526, gck-1, Germinal center kinase 1, [Score=135, Expect=7e-33]} {Smed: dd_Smed_v6_1953_0_1, dd_Smed_v6_1953_0_1, [Score=142, Expect=9e-36]} {RNA1509_30944} {RNA1310_10558} {RNA815_3657}

Cumulative graph for MligTC455_18264

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.471 2.843 0.29375 0.94530
RegionR2 -1.03 2.843 0.11693 0.42359
RegionR3 0.756 2.843 0.12657 0.61260
RegionR4 1.841 2.843 0.00893 0.05603
RegionR5 -0.708 2.843 0.20787 0.50257
RegionR6 0.074 2.843 0.88787 1.00000
RegionR7 -0.741 2.843 0.32612 0.96091
RegionR8 -1.661 2.843 0.09278 0.57535

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.727 2.843 0.12843 0.86112
RegenerationR2 -1.192 2.843 0.05712 0.39252
RegenerationR3 -1.188 2.843 0.04438 0.36817
RegenerationR4 -1.719 2.843 0.01175 0.16603
RegenerationR5 -0.076 2.843 0.90340 1.00000
RegenerationR6 -1.328 2.843 0.05205 0.28602
RegenerationBL -0.385 2.843 0.67814 1.00000
RegenerationTP -0.08 2.843 0.93095 1.00000


Genes with expression patterns similar to MligTC455_18264

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18264 254 5.29 Mlig455_070579

Neo: -

Age: Up-Down-Up

 MAP3K19 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_070579 {REF} {Length: 4210} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=189.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=129.6]; ABC1 atypical kinase-like domain [PF03109.18, score=34.1]; Fungal protein kinase [PF17667.3, score=29.1]; Kinase-like [PF14531.8, score=24.5]; Phosphotransferase enzyme family [PF01636.25, score=19.4]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=161, Expect=4e-42]; ENSG00000134602, STK26, serine/threonine kinase 26, [Score=154, Expect=2e-40]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=157, Expect=1e-40]; ENSMUSG00000031112, Stk26, serine/threonine kinase 26, [Score=154, Expect=2e-40]} {Dmel: FBgn0266465, GckIII, Germinal centre kinase III, [Score=152, Expect=2e-38]} {Celegans: WBGene00001526, gck-1, Germinal center kinase 1, [Score=135, Expect=7e-33]} {Smed: dd_Smed_v6_1953_0_1, dd_Smed_v6_1953_0_1, [Score=142, Expect=9e-36]} {RNA1509_30944} {RNA1310_10558} {RNA815_3657}
2. MligTC455_54298 484 10.08 Mlig455_036433, Mlig455_054604

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.319

 1.775 - - 0.955 - - 0.820

Mlig455_036433 {REF} {Length: 2616} {Pfam: Leucine rich repeat [PF13855.8, score=44.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=21.7]} {Mouse: ENSMUSG00000042793, Lgr6, leucine-rich repeat-containing G protein-coupled receptor 6, [Score=50.1, Expect=7e-06]} {RNA1509_11297} {RNA1310_8241} {RNA815_10557}

Mlig455_054604 {REF} {Length: 2612} {Pfam: Leucine rich repeat [PF13855.8, score=45.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=22.2]} {Mouse: ENSMUSG00000042793, Lgr6, leucine-rich repeat-containing G protein-coupled receptor 6, [Score=51.2, Expect=3e-06]} {Dmel: FBgn0015400, kek2, kekkon-2, [Score=50.4, Expect=4e-06]} {RNA1509_11297} {RNA1310_8241, RNA1509_11297} {RNA1509_11297, RNA815_10557}
3. MligTC455_18698 155 3.23 Mlig455_058123

Neo: -

Age: -

 0.978 - - 0.978 - - - Mlig455_058123 {REF} {Length: 975} {Pfam: YlqD protein [PF11068.10, score=18.9]} {RNA1310_7330.2} {RNA815_3574}
4. MligTC455_28048 559 11.64 Mlig455_054717

Neo: -

Age: Down-Up-Down

 0.97 - - 0.970 - - - Mlig455_054717 {REF} {Length: 6438} {Pfam: Syndecan domain [PF01034.22, score=37.3]; SEA domain [PF01390.22, score=32.1]; Thyroglobulin type-1 repeat [PF00086.20, score=18.4]} {Dmel: FBgn0010415, Sdc, Syndecan, [Score=50.8, Expect=9e-07]} {Smed: dd_Smed_v6_14098_0_1, dd_Smed_v6_14098_0_1, [Score=77.0, Expect=2e-15]} {RNA1509_19683} {RNA1310_22787.1} {RNA815_5677.1}
5. MligTC455_28746 352 7.34 Mlig455_013115

Neo: -

Age: -

 ITPR1 0.96 - - 0.960 - - - Mlig455_013115 {REF} {Length: 9824} {Pfam: RIH domain [PF01365.23, score=97.2]; Inositol 1,4,5-trisphosphate/ryanodine receptor [PF08709.13, score=68.8]; RyR and IP3R Homology associated [PF08454.13, score=66.6]; MIR domain [PF02815.21, score=57.6]; Ion transport protein [PF00520.33, score=17.9]} {Human: ENSG00000150995, ITPR1, inositol 1,4,5-trisphosphate receptor type 1, [Score=229, Expect=5e-59]; ENSG00000096433, ITPR3, inositol 1,4,5-trisphosphate receptor type 3, [Score=224, Expect=1e-57]; ENSG00000123104, ITPR2, inositol 1,4,5-trisphosphate receptor type 2, [Score=219, Expect=5e-56]} {Mouse: ENSMUSG00000042644, Itpr3, inositol 1,4,5-triphosphate receptor 3, [Score=227, Expect=9e-59]} {Dmel: FBgn0010051, Itp-r83A, Inositol 1,4,5,-tris-phosphate receptor, [Score=160, Expect=2e-38]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=166, Expect=2e-40]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [RH, Score=3031, Expect=0.0]} {RNA1509_25537, RNA1509_2749} {RNA1310_434.1, RNA1509_25537, RNA1509_2749} {RNA1509_25537, RNA1509_2749, RNA815_101}
6. MligTC455_47610 1183 24.64 Mlig455_031962, Mlig455_032013

Neo: -

Age: -

 BBOX1 0.957 - - 0.957 - - -

Mlig455_031962 {REF} {Length: 1879} {TRANSSPLICED} {Pfam: Taurine catabolism dioxygenase TauD, TfdA family [PF02668.18, score=142.7]; Gamma-butyrobetaine hydroxylase-like, N-terminal [PF06155.14, score=40.5]} {Human: ENSG00000129151, BBOX1, gamma-butyrobetaine hydroxylase 1, [Score=221, Expect=1e-67]} {Mouse: ENSMUSG00000041660, Bbox1, butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase), [Score=228, Expect=2e-70]} {Dmel: FBgn0030575, CG5321, [Score=234, Expect=3e-72]} {Celegans: WBGene00001522, gbh-1, Probable gamma-butyrobetaine dioxygenase, [Score=155, Expect=2e-42]} {Smed: dd_Smed_v6_42907_0_1, dd_Smed_v6_42907_0_1, [Score=64.3, Expect=2e-11]} {RNA1509_19035} {RNA1310_2841} {RNA815_6735}

Mlig455_032013 {REF} {Length: 1884} {TRANSSPLICED} {Pfam: Taurine catabolism dioxygenase TauD, TfdA family [PF02668.18, score=142.7]; Gamma-butyrobetaine hydroxylase-like, N-terminal [PF06155.14, score=40.5]} {Human: ENSG00000129151, BBOX1, gamma-butyrobetaine hydroxylase 1, [Score=221, Expect=1e-67]} {Mouse: ENSMUSG00000041660, Bbox1, butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase), [Score=228, Expect=2e-70]} {Dmel: FBgn0030575, CG5321, [Score=234, Expect=3e-72]} {Celegans: WBGene00001522, gbh-1, Probable gamma-butyrobetaine dioxygenase, [Score=155, Expect=2e-42]} {Smed: dd_Smed_v6_42907_0_1, dd_Smed_v6_42907_0_1, [Score=64.3, Expect=2e-11]} {RNA1509_12207, RNA1509_19035, RNA1509_53176} {RNA1310_2841, RNA1509_12207, RNA1509_19035, RNA1509_53176} {RNA1509_12207, RNA1509_19035, RNA1509_53176, RNA815_6735}
7. MligTC455_34751 508 10.58 Mlig455_007556, Mlig455_007561, Mlig455_036660

Neo: -

Age: -

 0.954 - - 0.954 - - -

Mlig455_007556 {REF} {Length: 2417} {Pfam: Fragile site-associated protein C-terminus [PF10479.11, score=21.8]; Mucin-like glycoprotein [PF01456.19, score=18.9]} {RNA1310_14864} {RNA815_13607}

Mlig455_007561 {REF} {Length: 2562} {NoTransDecoderORF} {RNA1310_14864} {RNA815_13607}

Mlig455_036660 {REF} {Length: 2188} {TRANSSPLICED} {Pfam: Fragile site-associated protein C-terminus [PF10479.11, score=25.3]; Mucin-like glycoprotein [PF01456.19, score=20.8]} {RNA1310_14864} {RNA815_13607}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA