M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_18698

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18698 155 3.23 Mlig455_058123

Neo: -

Age: -

 Mlig455_058123 {REF} {Length: 975} {Pfam: YlqD protein [PF11068.10, score=18.9]} {RNA1310_7330.2} {RNA815_3574}

Cumulative graph for MligTC455_18698

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 3.103 1.972 0.04103 0.49127
RegionR2 -0.167 1.972 0.86663 1.00000
RegionR3 0.42 1.972 0.50140 0.99505
RegionR4 -0.37 1.972 0.68303 0.97631
RegionR5 -1.647 1.972 0.04822 0.18275
RegionR6 -2.192 1.972 0.03149 0.32931
RegionR7 0.206 1.972 0.82491 1.00000
RegionR8 0.648 1.972 0.65347 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.77 1.972 0.05318 0.70528
RegenerationR2 0.229 1.972 0.70503 0.95808
RegenerationR3 -0.648 1.972 0.35257 0.77246
RegenerationR4 0.281 1.972 0.69047 0.94958
RegenerationR5 1.486 1.972 0.06671 0.40697
RegenerationR6 1.832 1.972 0.07675 0.34626
RegenerationBL 1.181 1.972 0.19948 0.53748
RegenerationTP -0.418 1.972 0.72323 1.00000


Genes with expression patterns similar to MligTC455_18698

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18698 155 3.23 Mlig455_058123

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_058123 {REF} {Length: 975} {Pfam: YlqD protein [PF11068.10, score=18.9]} {RNA1310_7330.2} {RNA815_3574}
2. MligTC455_44536 178 3.71 Mlig455_002956

Neo: -

Age: -

 ALX3 1.726 - - - - 0.775 0.951 Mlig455_002956 {REF} {Length: 2217} {Pfam: Homeodomain [PF00046.31, score=82.6]} {Human: ENSG00000156150, ALX3, ALX homeobox 3, [RH, Score=135, Expect=5e-36]; ENSG00000052850, ALX4, ALX homeobox 4, [RH, Score=134, Expect=4e-35]; ENSG00000180318, ALX1, ALX homeobox 1, [RH, Score=129, Expect=6e-34]} {Mouse: ENSMUSG00000040310, Alx4, aristaless-like homeobox 4, [RH, Score=134, Expect=4e-35]; ENSMUSG00000014603, Alx3, aristaless-like homeobox 3, [RH, Score=134, Expect=1e-35]; ENSMUSG00000036602, Alx1, ALX homeobox 1, [RH, Score=129, Expect=1e-34]} {Dmel: FBgn0020617, Rx, Retinal Homeobox, [RH, Score=119, Expect=8e-29]} {Celegans: WBGene00044330, alr-1, AristaLess (Drosophila homeodomain) Related, [RH, Score=116, Expect=4e-29]} {Smed: dd_Smed_v6_16955_0_1, dd_Smed_v6_16955_0_1, [RH, Score=132, Expect=7e-35]} {RNA1310_34642} {RNA815_45742}
3. MligTC455_41525 725 15.1 Mlig455_006866, Mlig455_017870

Neo: -

Age: -

 HMCN2 1.715 - - - - 0.759 0.956

Mlig455_006866 {REF} {Length: 3883} {Pfam: Immunoglobulin domain [PF13927.8, score=225.1]; Immunoglobulin domain [PF13895.8, score=169.8]; Immunoglobulin I-set domain [PF07679.18, score=154.9]; Immunoglobulin domain [PF00047.27, score=142.5]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=62.6]; Immunoglobulin V-set domain [PF07686.19, score=62.4]; Fibronectin type III domain [PF00041.23, score=34.9]; Izumo-like Immunoglobulin domain [PF16706.7, score=24.0]; Adenovirus E3 region protein CR2 [PF02439.17, score=23.9]; T-cell surface glycoprotein CD3 delta chain [PF16680.7, score=23.1]; FAM176 family [PF14851.8, score=22.1]; C17orf99 Ig domain [PF17736.3, score=21.5]; Immunoglobulin domain [PF18452.3, score=18.8]} {Human: ENSG00000148357, HMCN2, hemicentin 2, [Score=134, Expect=5e-31]} {Mouse: ENSMUSG00000055632, Hmcn2, hemicentin 2, [Score=126, Expect=9e-29]; ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=123, Expect=1e-27]} {Dmel: FBgn0000547, ed, echinoid, [RH, Score=238, Expect=4e-64]} {Celegans: WBGene00018215, igcm-1, ImmunoGlobulin-like Cell adhesion Molecule family, [RH, Score=180, Expect=5e-46]} {Smed: dd_Smed_v6_13275_0_1, dd_Smed_v6_13275_0_1, [RH, Score=220, Expect=1e-58]} {RNA1310_17320} {RNA815_26622}

Mlig455_017870 {REF} {Length: 1801} {Pfam: Adenovirus E3 region protein CR2 [PF02439.17, score=26.9]; FAM176 family [PF14851.8, score=25.6]} {RNA1310_23855} {RNA815_26622}
4. MligTC455_32752 991 20.65 Mlig455_048936, Mlig455_048957

Neo: -

Age: -

 AGAP3 1.684 - - - - 0.954 0.730

Mlig455_048936 {REF} {Length: 2649} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=114.5]; PH domain [PF00169.31, score=21.9]} {Human: ENSG00000133612, AGAP3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=250, Expect=3e-73]} {Mouse: ENSMUSG00000023353, Agap3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=242, Expect=3e-72]} {Dmel: FBgn0028509, CenG1A, Centaurin gamma 1A, [Score=181, Expect=7e-48]} {Celegans: WBGene00000566, cnt-2, Arf-GAP with ANK repeat and PH domain-containing protein cnt-2, [Score=146, Expect=3e-36]} {Smed: dd_Smed_v6_4301_0_2, dd_Smed_v6_4301_0_2, [Score=248, Expect=4e-70]} {RNA1509_54301} {RNA1310_18299} {RNA815_29402}

Mlig455_048957 {REF} {Length: 11921} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=114.5]; PH domain [PF00169.31, score=21.9]} {Human: ENSG00000133612, AGAP3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=249, Expect=3e-73]} {Mouse: ENSMUSG00000023353, Agap3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=243, Expect=3e-72]} {Dmel: FBgn0028509, CenG1A, Centaurin gamma 1A, [Score=181, Expect=8e-48]} {Celegans: WBGene00000566, cnt-2, Arf-GAP with ANK repeat and PH domain-containing protein cnt-2, [Score=145, Expect=2e-36]} {Smed: dd_Smed_v6_4301_0_2, dd_Smed_v6_4301_0_2, [Score=248, Expect=3e-70]} {RNA1509_54301} {RNA1310_18299} {RNA815_29402}
5. MligTC455_18104 454 9.45 Mlig455_039777

Neo: -

Age: -

 SLC35C2 1.679 - - 0.959 - - 0.720 Mlig455_039777 {REF} {Length: 2871} {TRANSSPLICED} {Pfam: Triose-phosphate Transporter family [PF03151.18, score=71.9]; UAA transporter family [PF08449.13, score=35.9]; EamA-like transporter family [PF00892.22, score=22.3]} {Human: ENSG00000080189, SLC35C2, solute carrier family 35 member C2, [RH, Score=313, Expect=1e-104]} {Mouse: ENSMUSG00000017664, Slc35c2, solute carrier family 35, member C2, [RH, Score=298, Expect=9e-99]} {Dmel: FBgn0035449, CG14971, [RH, Score=275, Expect=1e-88]} {Celegans: WBGene00021637, Y47G6A.7, [Score=223, Expect=1e-69]} {Smed: dd_Smed_v6_10022_0_1, dd_Smed_v6_10022_0_1, [Score=362, Expect=3e-124]} {RNA1509_11424} {RNA1310_9746, RNA1509_11424} {RNA1509_11424, RNA815_4547}
6. MligTC455_25776 220 4.59 Mlig455_000479, Mlig455_024867

Neo: -

Age: -

 0.983 - - - - - 0.983

Mlig455_000479 {REF} {Length: 548} {Pfam: PHD-finger [PF00628.31, score=27.6]} {RNA1310_79789}

Mlig455_024867 {REF} {Length: 1776} {Pfam: PHD-finger [PF00628.31, score=25.7]} {RNA1310_46465}
7. MligTC455_13403 157 3.27 Mlig455_058321

Neo: -

Age: Down-Up-Down

Region-enriched R2: 2.878/0.03174

 LARP1 0.98 - - - - - 0.980 Mlig455_058321 {REF} {Length: 2328} {Human: ENSG00000155506, LARP1, La ribonucleoprotein domain family member 1, [Score=178, Expect=6e-52]} {Mouse: ENSMUSG00000037331, Larp1, La ribonucleoprotein domain family, member 1, [Score=178, Expect=5e-52]; ENSMUSG00000025762, Larp1b, La ribonucleoprotein domain family, member 1B, [Score=171, Expect=9e-54]} {Dmel: FBgn0261618, larp, La related protein, [Score=172, Expect=4e-50]} {Celegans: WBGene00020097, larp-1, La-related protein 1, [Score=136, Expect=2e-37]} {Smed: dd_Smed_v6_2667_0_1, dd_Smed_v6_2667_0_1, [Score=170, Expect=2e-49]} {RNA1509_29509} {RNA1310_3597.2, RNA1509_29509} {RNA1509_29509, RNA815_2607}
8. MligTC455_22438 141 2.93 Mlig455_002466, Mlig455_002692, Mlig455_002709

Neo: -

Age: -

 LRRC4B 0.98 - - - - - 0.980

Mlig455_002466 {REF} {Length: 4161} {Pfam: Leucine rich repeat [PF13855.8, score=36.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=36.3]} {Human: ENSG00000131409, LRRC4B, leucine rich repeat containing 4B, [Score=50.8, Expect=1e-05]} {Mouse: ENSMUSG00000047085, Lrrc4b, leucine rich repeat containing 4B, [Score=50.1, Expect=1e-05]} {RNA1509_49521} {RNA1310_12269} {RNA815_33032}

Mlig455_002692 {REF} {Length: 4009} {Pfam: Leucine rich repeat [PF13855.8, score=46.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=36.5]; Leucine Rich repeat [PF13516.8, score=18.5]} {Human: ENSG00000131409, LRRC4B, leucine rich repeat containing 4B, [Score=52.4, Expect=4e-06]} {Mouse: ENSMUSG00000047085, Lrrc4b, leucine rich repeat containing 4B, [Score=52.0, Expect=3e-06]} {Dmel: FBgn0264089, sli, slit, [Score=50.8, Expect=7e-06]} {RNA1509_49521} {RNA1310_12269, RNA1509_49521} {RNA1509_49521, RNA815_33032}

Mlig455_002709 {REF} {Length: 3998} {Pfam: Leucine rich repeat [PF13855.8, score=46.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=36.5]; Leucine Rich repeat [PF13516.8, score=18.5]} {Human: ENSG00000131409, LRRC4B, leucine rich repeat containing 4B, [Score=52.4, Expect=4e-06]} {Mouse: ENSMUSG00000047085, Lrrc4b, leucine rich repeat containing 4B, [Score=52.0, Expect=3e-06]} {Dmel: FBgn0264089, sli, slit, [Score=50.8, Expect=7e-06]} {RNA1509_49521} {RNA1310_12269} {RNA815_33032}
9. MligTC455_18264 254 5.29 Mlig455_070579

Neo: -

Age: Up-Down-Up

 MAP3K19 0.978 - - 0.978 - - - Mlig455_070579 {REF} {Length: 4210} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=189.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=129.6]; ABC1 atypical kinase-like domain [PF03109.18, score=34.1]; Fungal protein kinase [PF17667.3, score=29.1]; Kinase-like [PF14531.8, score=24.5]; Phosphotransferase enzyme family [PF01636.25, score=19.4]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=161, Expect=4e-42]; ENSG00000134602, STK26, serine/threonine kinase 26, [Score=154, Expect=2e-40]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=157, Expect=1e-40]; ENSMUSG00000031112, Stk26, serine/threonine kinase 26, [Score=154, Expect=2e-40]} {Dmel: FBgn0266465, GckIII, Germinal centre kinase III, [Score=152, Expect=2e-38]} {Celegans: WBGene00001526, gck-1, Germinal center kinase 1, [Score=135, Expect=7e-33]} {Smed: dd_Smed_v6_1953_0_1, dd_Smed_v6_1953_0_1, [Score=142, Expect=9e-36]} {RNA1509_30944} {RNA1310_10558} {RNA815_3657}
10. MligTC455_29937 75 1.55 Mlig455_053384

Neo: -

Age: -

 0.975 - - - - - 0.975 Mlig455_053384 {REF} {Length: 3610} {NoTransDecoderORF} {RNA1509_57191} {RNA1310_45092} {RNA815_10095.1}
11. MligTC455_30265 720 14.99 Mlig455_014549, Mlig455_036942

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.640

 0.974 - - - - - 0.974

Mlig455_014549 {REF} {Length: 1343} {RNA1509_45000} {RNA1310_32524} {RNA815_26384}

Mlig455_036942 {REF} {Length: 1343} {RNA1509_45000} {RNA1310_32524} {RNA815_26384}
12. MligTC455_30406 127 2.64 Mlig455_008473

Neo: -

Age: Down-Up-Up

 CEBPD 0.972 - - 0.972 - - - Mlig455_008473 {REF} {Length: 3188} {Pfam: Basic region leucine zipper [PF07716.17, score=31.1]; bZIP transcription factor [PF00170.23, score=22.8]} {Human: ENSG00000221869, CEBPD, CCAAT enhancer binding protein delta, [Score=52.4, Expect=2e-07]} {Mouse: ENSMUSG00000071637, Cebpd, CCAAT/enhancer binding protein (C/EBP), delta, [Score=52.8, Expect=1e-07]} {RNA1509_46169} {RNA1310_36388, RNA1509_46169} {RNA1509_46169, RNA815_32515}
13. MligTC455_28048 559 11.64 Mlig455_054717

Neo: -

Age: Down-Up-Down

 0.971 - - 0.971 - - - Mlig455_054717 {REF} {Length: 6438} {Pfam: Syndecan domain [PF01034.22, score=37.3]; SEA domain [PF01390.22, score=32.1]; Thyroglobulin type-1 repeat [PF00086.20, score=18.4]} {Dmel: FBgn0010415, Sdc, Syndecan, [Score=50.8, Expect=9e-07]} {Smed: dd_Smed_v6_14098_0_1, dd_Smed_v6_14098_0_1, [Score=77.0, Expect=2e-15]} {RNA1509_19683} {RNA1310_22787.1} {RNA815_5677.1}
14. MligTC455_42779 52 1.08 Mlig455_034985

Neo: -

Age: -

 TIA1 0.97 - - - - - 0.970 Mlig455_034985 {REF} {Length: 2883} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=137.6]; RNA binding motif [PF08777.13, score=27.7]; RNA recognition motif [PF16367.7, score=27.3]; Cytosolic domain of 10TM putative phosphate transporter [PF14703.8, score=22.0]; Nup53/35/40-type RNA recognition motif [PF05172.15, score=19.3]; Nup53/35/40-type RNA recognition motif [PF14605.8, score=19.0]} {Human: ENSG00000116001, TIA1, TIA1 cytotoxic granule associated RNA binding protein, [RH, Score=236, Expect=6e-74]; ENSG00000151923, TIAL1, TIA1 cytotoxic granule associated RNA binding protein like 1, [RH, Score=225, Expect=2e-69]} {Mouse: ENSMUSG00000071337, Tia1, cytotoxic granule-associated RNA binding protein 1, [RH, Score=234, Expect=2e-73]; ENSMUSG00000030846, Tial1, Tia1 cytotoxic granule-associated RNA binding protein-like 1, [RH, Score=225, Expect=2e-70]} {Dmel: FBgn0085391, trv, trivet, [RH, Score=242, Expect=4e-75]} {Celegans: WBGene00015943, tiar-1, TIA-1/TIAL RNA binding protein homolog, [RH, Score=229, Expect=2e-71]} {Smed: dd_Smed_v6_10924_0_1, dd_Smed_v6_10924_0_1, [RH, Score=359, Expect=2e-122]} {RNA1509_20262} {RNA1310_6771} {RNA815_11494}
15. MligTC455_47610 1183 24.64 Mlig455_031962, Mlig455_032013

Neo: -

Age: -

 BBOX1 0.969 - - 0.969 - - -

Mlig455_031962 {REF} {Length: 1879} {TRANSSPLICED} {Pfam: Taurine catabolism dioxygenase TauD, TfdA family [PF02668.18, score=142.7]; Gamma-butyrobetaine hydroxylase-like, N-terminal [PF06155.14, score=40.5]} {Human: ENSG00000129151, BBOX1, gamma-butyrobetaine hydroxylase 1, [Score=221, Expect=1e-67]} {Mouse: ENSMUSG00000041660, Bbox1, butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase), [Score=228, Expect=2e-70]} {Dmel: FBgn0030575, CG5321, [Score=234, Expect=3e-72]} {Celegans: WBGene00001522, gbh-1, Probable gamma-butyrobetaine dioxygenase, [Score=155, Expect=2e-42]} {Smed: dd_Smed_v6_42907_0_1, dd_Smed_v6_42907_0_1, [Score=64.3, Expect=2e-11]} {RNA1509_19035} {RNA1310_2841} {RNA815_6735}

Mlig455_032013 {REF} {Length: 1884} {TRANSSPLICED} {Pfam: Taurine catabolism dioxygenase TauD, TfdA family [PF02668.18, score=142.7]; Gamma-butyrobetaine hydroxylase-like, N-terminal [PF06155.14, score=40.5]} {Human: ENSG00000129151, BBOX1, gamma-butyrobetaine hydroxylase 1, [Score=221, Expect=1e-67]} {Mouse: ENSMUSG00000041660, Bbox1, butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase), [Score=228, Expect=2e-70]} {Dmel: FBgn0030575, CG5321, [Score=234, Expect=3e-72]} {Celegans: WBGene00001522, gbh-1, Probable gamma-butyrobetaine dioxygenase, [Score=155, Expect=2e-42]} {Smed: dd_Smed_v6_42907_0_1, dd_Smed_v6_42907_0_1, [Score=64.3, Expect=2e-11]} {RNA1509_12207, RNA1509_19035, RNA1509_53176} {RNA1310_2841, RNA1509_12207, RNA1509_19035, RNA1509_53176} {RNA1509_12207, RNA1509_19035, RNA1509_53176, RNA815_6735}
16. MligTC455_28746 352 7.34 Mlig455_013115

Neo: -

Age: -

 ITPR1 0.968 - - 0.968 - - - Mlig455_013115 {REF} {Length: 9824} {Pfam: RIH domain [PF01365.23, score=97.2]; Inositol 1,4,5-trisphosphate/ryanodine receptor [PF08709.13, score=68.8]; RyR and IP3R Homology associated [PF08454.13, score=66.6]; MIR domain [PF02815.21, score=57.6]; Ion transport protein [PF00520.33, score=17.9]} {Human: ENSG00000150995, ITPR1, inositol 1,4,5-trisphosphate receptor type 1, [Score=229, Expect=5e-59]; ENSG00000096433, ITPR3, inositol 1,4,5-trisphosphate receptor type 3, [Score=224, Expect=1e-57]; ENSG00000123104, ITPR2, inositol 1,4,5-trisphosphate receptor type 2, [Score=219, Expect=5e-56]} {Mouse: ENSMUSG00000042644, Itpr3, inositol 1,4,5-triphosphate receptor 3, [Score=227, Expect=9e-59]} {Dmel: FBgn0010051, Itp-r83A, Inositol 1,4,5,-tris-phosphate receptor, [Score=160, Expect=2e-38]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=166, Expect=2e-40]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [RH, Score=3031, Expect=0.0]} {RNA1509_25537, RNA1509_2749} {RNA1310_434.1, RNA1509_25537, RNA1509_2749} {RNA1509_25537, RNA1509_2749, RNA815_101}
17. MligTC455_38086 3876 80.76 Mlig455_044474, Mlig455_046754

Neo: -

Age: Up-Down-Up

Region-enriched R1: 3.659/0.00863

 ZNF347 0.968 - - 0.968 - - -

Mlig455_044474 {REF} {Length: 431} {Pfam: C2H2-type zinc finger [PF13894.8, score=25.7]} {RNA1509_7797} {RNA1310_1145} {RNA815_22627}

Mlig455_046754 {REF} {Length: 5818} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=86.8]; C2H2-type zinc finger [PF13894.8, score=73.9]; C2H2-type zinc finger [PF13912.8, score=39.9]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=24.3]} {Human: ENSG00000197937, ZNF347, zinc finger protein 347, [Score=81.3, Expect=8e-15]} {Mouse: ENSMUSG00000034538, Zfp418, zinc finger protein 418, [Score=72.8, Expect=2e-12]; ENSMUSG00000037640, Zfp60, zinc finger protein 60, [Score=70.9, Expect=8e-12]; ENSMUSG00000058883, Zfp708, zinc finger protein 708, [Score=70.5, Expect=8e-12]} {Dmel: FBgn0028647, CG11902, [Score=57.8, Expect=7e-08]} {Celegans: WBGene00003847, blmp-1, B lymphocyte-induced maturation protein 1 homolog, [Score=53.1, Expect=1e-06]} {RNA1509_7797} {RNA1310_1145} {RNA815_319.1}
18. MligTC455_33469 85 1.76 Mlig455_013902

Neo: -

Age: -

 0.965 - - - - - 0.965 Mlig455_013902 {REF} {Length: 260} {NoTransDecoderORF} {RNA1509_42818} {RNA1310_58695} {RNA815_11113.1}
19. MligTC455_51237 165 3.45 Mlig455_022964

Neo: -

Age: -

 0.965 - - - - - 0.965 Mlig455_022964 {REF} {Length: 5130} {RNA1509_17796} {RNA1310_9778} {RNA815_2961.1}
20. MligTC455_01297 70 1.46 Mlig455_042285

Neo: -

Age: -

 0.963 - - 0.963 - - - Mlig455_042285 {REF} {Length: 118} {NoTransDecoderORF}
21. MligTC455_36085 165 3.44 Mlig455_043517, Mlig455_052478

Neo: -

Age: -

Region-enriched R2: 4.331/0.04635

 0.963 - - - - - 0.963

Mlig455_043517 {REF} {Length: 3078} {NoTransDecoderORF} {RNA1509_43957} {RNA1310_14043} {RNA815_37878}

Mlig455_052478 {REF} {Length: 617} {NoTransDecoderORF} {RNA1509_43957} {RNA1310_64561} {RNA815_37878}
22. MligTC455_45962 226 4.7 Mlig455_012110, Mlig455_041615

Neo: -

Age: -

 0.962 - - - - - 0.962

Mlig455_012110 {REF} {Length: 117} {NoTransDecoderORF} {RNA1509_5701} {RNA1310_28426} {RNA815_453.2}

Mlig455_041615 {REF} {Length: 614} {NoTransDecoderORF} {RNA1509_5701} {RNA1310_32112.1} {RNA815_453.1}
23. MligTC455_36099 380 7.91 Mlig455_031102

Neo: -

Age: -

 0.961 - - - - - 0.961 Mlig455_031102 {REF} {Length: 2608} {RNA1509_11448} {RNA1310_8565.1} {RNA815_3024}
24. MligTC455_43410 203 4.22 Mlig455_057515

Neo: -

Age: logFC(26M/2M)=-0.214

 TRAF5 0.961 - - - - - 0.961 Mlig455_057515 {REF} {Length: 2170} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=45.7]; Seven in absentia protein family [PF03145.18, score=25.7]} {Human: ENSG00000082512, TRAF5, TNF receptor associated factor 5, [Score=197, Expect=7e-55]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=173, Expect=2e-46]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=96.7, Expect=6e-21]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=95.5, Expect=1e-20]} {Smed: dd_Smed_v6_10424_0_1, dd_Smed_v6_10424_0_1, [Score=109, Expect=2e-25]} {RNA1509_32223} {RNA1310_24731} {RNA815_3096.1}
25. MligTC455_52920 771 16.06 Mlig455_006314, Mlig455_033804, Mlig455_039341, Mlig455_043187, Mlig455_054935, Mlig455_060140

Neo: -

Age: Down-Up-Down

Regeneration-upregulated BL: 3.382

Regeneration-enriched BL: 3.382

 0.961 - - - - - 0.961

Mlig455_006314 {REF} {Length: 703} {RNA1509_17207} {RNA1310_9936.1} {RNA815_40410}

Mlig455_033804 {REF} {Length: 884} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=53.1, Expect=9e-09]} {RNA1509_17207} {RNA1310_9936.1} {RNA815_40410}

Mlig455_039341 {REF} {Length: 703} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=53.1, Expect=8e-09]} {RNA1509_17207} {RNA1310_664.1} {RNA815_40410}

Mlig455_043187 {REF} {Length: 904} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=54.3, Expect=3e-09]} {RNA1509_17207} {RNA1310_664.1} {RNA815_40410}

Mlig455_054935 {REF} {Length: 1027} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=56.6, Expect=6e-10]} {RNA1509_17207} {RNA1310_664.1} {RNA815_40410}

Mlig455_060140 {REF} {Length: 793} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=52.0, Expect=1e-08]} {RNA1509_17207} {RNA1310_9936.1} {RNA815_40410}
26. MligTC455_06989 68 1.42 Mlig455_026846

Neo: -

Age: -

 0.96 - - - - - 0.960 Mlig455_026846 {REF} {Length: 573} {NoTransDecoderORF} {RNA1509_59553} {RNA1310_127391}
27. MligTC455_28195 1266 26.37 Mlig455_000388, Mlig455_002395, Mlig455_003523, Mlig455_003524, Mlig455_004974, Mlig455_011782, Mlig455_028491, Mlig455_042262, Mlig455_043247, Mlig455_058189, Mlig455_061977, Mlig455_063875, Mlig455_071115

Neo: -

Age: Up-Down-Up

Regeneration-upregulated BL: 2.615

Regeneration-enriched BL: 2.615

 FBXO16 0.959 - - - - - 0.959

Mlig455_000388 {REF} {Length: 620} {NoTransDecoderORF} {RNA1310_4439.2} {RNA815_12729}

Mlig455_002395 {REF} {Length: 1147} {NoTransDecoderORF} {RNA1509_2932} {RNA1310_4439.1} {RNA815_12729}

Mlig455_003523 {REF} {Length: 7744} {NoTransDecoderORF} {RNA1509_2932, RNA1509_54696} {RNA1310_4439.1, RNA1509_54696} {RNA1509_54696, RNA815_12729}

Mlig455_003524 {REF} {Length: 214} {NoTransDecoderORF} {RNA1310_4439.2} {RNA815_12729}

Mlig455_004974 {REF} {Length: 17755} {Pfam: Cysteine rich repeat [PF02363.21, score=25.6]} {Celegans: WBGene00018026, F35A5.4, [Score=58.5, Expect=1e-10]} {RNA1509_26270, RNA1509_30620} {RNA1310_13656, RNA1509_26270} {RNA1509_26270, RNA815_1450.1}

Mlig455_011782 {REF} {Length: 10876} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}

Mlig455_028491 {REF} {Length: 773} {NoTransDecoderORF} {RNA1310_4439.2} {RNA815_12729}

Mlig455_042262 {REF} {Length: 2209} {NoTransDecoderORF} {RNA1509_2932} {RNA1310_4439.1} {RNA815_12729}

Mlig455_043247 {REF} {Length: 1123} {NoTransDecoderORF} {RNA1509_24710} {RNA1310_4439.1} {RNA815_12729}

Mlig455_058189 {REF} {Length: 15225} {Pfam: F-box-like [PF12937.9, score=24.2]; F-box domain [PF00646.35, score=22.0]; Domain of unknown function (DUF4508) [PF14969.8, score=19.2]} {Human: ENSG00000214050, FBXO16, F-box protein 16, [RH, Score=161, Expect=5e-46]} {Mouse: ENSMUSG00000034532, Fbxo16, F-box protein 16, [RH, Score=155, Expect=4e-44]} {Dmel: FBgn0041171, ago, archipelago, [Score=79.0, Expect=1e-15]} {Smed: dd_Smed_v6_12714_0_1, dd_Smed_v6_12714_0_1, [RH, Score=203, Expect=2e-62]} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}

Mlig455_061977 {REF} {Length: 246} {NoTransDecoderORF} {RNA1310_4439.2} {RNA815_12729}

Mlig455_063875 {REF} {Length: 2269} {NoTransDecoderORF} {RNA1509_2932} {RNA1310_43735.1} {RNA815_1450.1}

Mlig455_071115 {REF} {Length: 343} {NoTransDecoderORF} {RNA1310_4439.2} {RNA815_12729}
28. MligTC455_28278 110 2.28 Mlig455_018484

Neo: -

Age: -

 0.959 - - - - - 0.959 Mlig455_018484 {REF} {Length: 1124} {NoTransDecoderORF} {RNA1509_35077} {RNA1310_17510.1} {RNA815_9674}
29. MligTC455_43048 183 3.81 Mlig455_014457, Mlig455_070396

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=0.867

 0.959 - - - - - 0.959

Mlig455_014457 {REF} {Length: 2201} {TRANSSPLICED} {Pfam: Xylose isomerase-like TIM barrel [PF01261.26, score=147.2]} {Celegans: WBGene00000151, apn-1, DNA-(apurinic or apyrimidinic site) lyase, [RH, Score=239, Expect=3e-75]} {RNA1509_49311} {RNA1310_16444.1} {RNA815_20270}

Mlig455_070396 {REF} {Length: 2233} {TRANSSPLICED} {Pfam: Xylose isomerase-like TIM barrel [PF01261.26, score=147.2]} {Celegans: WBGene00000151, apn-1, DNA-(apurinic or apyrimidinic site) lyase, [RH, Score=239, Expect=3e-75]} {RNA1509_36391} {RNA1310_16444.1} {RNA815_20270}
30. MligTC455_28193 133 2.76 Mlig455_028120

Neo: -

Age: -

 0.958 - - - - - 0.958 Mlig455_028120 {REF} {Length: 967} {NoTransDecoderORF} {RNA1509_44500} {RNA1310_4439.2} {RNA815_12729}
31. MligTC455_51182 115 2.39 Mlig455_008371

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_008371 {REF} {Length: 4068} {RNA1509_59115} {RNA1310_11308.1, RNA1509_59115} {RNA1509_59115, RNA815_5703}
32. MligTC455_48213 164 3.41 Mlig455_056285, Mlig455_056310

Neo: -

Age: -

Region-enriched R2: 5.079/0.00142

 0.956 - - - - - 0.956

Mlig455_056285 {REF} {Length: 2259} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=140.9]} {Smed: dd_Smed_v6_22997_0_1, dd_Smed_v6_22997_0_1, [Score=85.1, Expect=2e-17]} {RNA1310_14535} {RNA815_31041}

Mlig455_056310 {REF} {Length: 1953} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=140.9]} {Smed: dd_Smed_v6_22997_0_1, dd_Smed_v6_22997_0_1, [Score=85.1, Expect=2e-17]} {RNA1310_14535} {RNA815_31041}
33. MligTC455_50250 182 3.8 Mlig455_066969

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.390

 SIM1 0.956 - - - - - 0.956 Mlig455_066969 {REF} {Length: 3256} {Pfam: PAS fold [PF08447.14, score=73.2]; PAS fold [PF00989.27, score=58.1]; PAS domain [PF14598.8, score=53.9]; Helix-loop-helix DNA-binding domain [PF00010.28, score=22.4]} {Human: ENSG00000112246, SIM1, SIM bHLH transcription factor 1, [RH, Score=526, Expect=2e-175]; ENSG00000159263, SIM2, SIM bHLH transcription factor 2, [RH, Score=522, Expect=4e-175]} {Mouse: ENSMUSG00000019913, Sim1, single-minded family bHLH transcription factor 1, [RH, Score=525, Expect=4e-175]; ENSMUSG00000062713, Sim2, single-minded family bHLH transcription factor 2, [RH, Score=522, Expect=5e-179]} {Dmel: FBgn0004666, sim, single-minded, [RH, Score=471, Expect=2e-155]} {Celegans: WBGene00011327, hlh-34, Helix-loop-helix 34, [RH, Score=128, Expect=3e-32]} {Smed: dd_Smed_v6_17731_0_1, dd_Smed_v6_17731_0_1, [RH, Score=511, Expect=3e-171]} {RNA1310_34436} {RNA815_20408}
34. MligTC455_13466 77 1.6 Mlig455_024443

Neo: -

Age: -

Region-enriched R2: 4.749/0.03840

Regeneration-upregulated R5: 4.247

Regeneration-enriched R5: 4.247

 0.955 - - - - - 0.955 Mlig455_024443 {REF} {Length: 381} {RNA1310_302.2}
35. MligTC455_27063 74 1.54 Mlig455_019209

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_019209 {REF} {Length: 481} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_99471} {RNA815_64986}
36. MligTC455_12978 63 1.31 Mlig455_023948

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_023948 {REF} {Length: 2929} {RNA1310_80095.1}
37. MligTC455_34671 189 3.94 Mlig455_026090

Neo: -

Age: -

 NR5A2 0.953 - - - - - 0.953 Mlig455_026090 {REF} {Length: 4213} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=89.6]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=61.3]} {Human: ENSG00000116833, NR5A2, nuclear receptor subfamily 5 group A member 2, [RH, Score=189, Expect=8e-52]} {Mouse: ENSMUSG00000026398, Nr5a2, nuclear receptor subfamily 5, group A, member 2, [Score=190, Expect=2e-52]} {Dmel: FBgn0261239, Hr39, Hormone receptor-like in 39, [RH, Score=160, Expect=5e-41]} {Celegans: WBGene00003623, nhr-25, Nuclear hormone receptor family member nhr-25, [RH, Score=134, Expect=6e-33]} {Smed: dd_Smed_v6_10427_0_1, dd_Smed_v6_10427_0_1, [RH, Score=366, Expect=1e-115]} {RNA1509_9824} {RNA1310_2235.1} {RNA815_938.3}
38. MligTC455_14951 478 9.95 Mlig455_032947

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_032947 {REF} {Length: 1296} {Pfam: PTN/MK heparin-binding protein family, C-terminal domain [PF01091.20, score=25.6]; PTN/MK heparin-binding protein family, N-terminal domain [PF05196.15, score=24.8]; Spondin-like TSP1 domain [PF19028.2, score=20.3]} {RNA1509_34845} {RNA1310_26331.1, RNA1509_34845} {RNA1509_34845, RNA815_23523}
39. MligTC455_27741 387 8.07 Mlig455_020707, Mlig455_020775

Neo: Irradiation

Age: Down-Up-Down

 GEN1 0.952 - - - - - 0.952

Mlig455_020707 {REF} {Length: 3335} {TRANSSPLICED} {Pfam: XPG I-region [PF00867.20, score=76.2]; XPG N-terminal domain [PF00752.19, score=58.9]; Cornifin (SPRR) family [PF02389.17, score=26.4]} {Human: ENSG00000178295, GEN1, GEN1, Holliday junction 5' flap endonuclease, [RH, Score=214, Expect=1e-58]} {Mouse: ENSMUSG00000051235, Gen1, GEN1, Holliday junction 5' flap endonuclease, [RH, Score=214, Expect=2e-58]} {Dmel: FBgn0263831, Gen, XPG-like endonuclease, [RH, Score=177, Expect=9e-47]} {Celegans: WBGene00000794, crn-1, Flap endonuclease 1, [Score=95.9, Expect=6e-21]} {Smed: dd_Smed_v6_8206_0_1, dd_Smed_v6_8206_0_1, [Score=104, Expect=5e-24]} {RNA1509_33403} {RNA1310_7248.1, RNA1509_33403} {RNA1509_33403, RNA815_24301}

Mlig455_020775 {REF} {Length: 3049} {TRANSSPLICED} {Pfam: XPG I-region [PF00867.20, score=76.2]; XPG N-terminal domain [PF00752.19, score=58.2]; Cornifin (SPRR) family [PF02389.17, score=26.4]} {Human: ENSG00000178295, GEN1, GEN1, Holliday junction 5' flap endonuclease, [RH, Score=214, Expect=2e-58]} {Mouse: ENSMUSG00000051235, Gen1, GEN1, Holliday junction 5' flap endonuclease, [RH, Score=213, Expect=3e-58]} {Dmel: FBgn0263831, Gen, XPG-like endonuclease, [RH, Score=176, Expect=2e-46]} {Celegans: WBGene00000794, crn-1, Flap endonuclease 1, [Score=95.1, Expect=9e-21]} {Smed: dd_Smed_v6_8206_0_1, dd_Smed_v6_8206_0_1, [Score=103, Expect=7e-24]} {RNA1509_33403} {RNA1310_7248.1} {RNA815_24301}
40. MligTC455_45952 49 1.02 Mlig455_010511

Neo: -

Age: Down-Down-Up

 0.952 - - - - - 0.952 Mlig455_010511 {REF} {Length: 2555} {RNA1509_42045} {RNA1310_60473} {RNA815_20864}
41. MligTC455_20718 632 13.17 Mlig455_024599

Neo: -

Age: -

 MARCH6 0.951 - - 0.951 - - - Mlig455_024599 {REF} {Length: 3922} {TRANSSPLICED} {Pfam: RING-variant domain [PF12906.9, score=54.3]} {Human: ENSG00000145495, MARCH6, membrane associated ring-CH-type finger 6, [RH, Score=441, Expect=8e-140]} {Mouse: ENSMUSG00000039100, March6, membrane-associated ring finger (C3HC4) 6, [RH, Score=447, Expect=3e-142]} {Dmel: FBgn0035333, CG1317, [RH, Score=171, Expect=2e-43]} {Celegans: WBGene00018847, marc-6, MARCH (Membrane-Associated Ring finger (C3HC4)) homolog, [RH, Score=221, Expect=2e-59]} {Smed: dd_Smed_v6_4584_0_1, dd_Smed_v6_4584_0_1, [RH, Score=374, Expect=7e-115]} {RNA1509_37473, RNA1509_50909, RNA1509_8006} {RNA1310_5490, RNA1509_37473, RNA1509_50909, RNA1509_8006} {RNA1509_37473, RNA1509_50909, RNA1509_8006, RNA815_7121}
42. MligTC455_28092 232 4.84 Mlig455_016454

Neo: -

Age: -

 ZNF91 0.951 - - - - - 0.951 Mlig455_016454 {REF} {Length: 5410} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=411.4]; Zinc finger, C2H2 type [PF00096.28, score=296.8]; C2H2-type zinc finger [PF13894.8, score=216.3]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=133.3]; Zinc-finger of C2H2 type [PF12874.9, score=111.7]; C2H2-type zinc finger [PF13912.8, score=45.4]; Family of unknown function (DUF5810) [PF19126.2, score=23.3]; C2H2-type zinc-finger domain [PF13909.8, score=21.3]; zinc-finger C2H2-type [PF16622.7, score=18.8]} {Human: ENSG00000167232, ZNF91, zinc finger protein 91, [Score=488, Expect=1e-154]; ENSG00000160321, ZNF208, zinc finger protein 208, [Score=482, Expect=1e-151]} {Mouse: ENSMUSG00000021510, Zfp729a, zinc finger protein 729a, [Score=426, Expect=1e-133]; ENSMUSG00000078877, Gm14295, predicted gene 14295, [Score=426, Expect=3e-135]; ENSMUSG00000058093, Zfp729b, zinc finger protein 729b, [Score=422, Expect=2e-131]; ENSMUSG00000068959, Zfp619, zinc finger protein 619, [Score=405, Expect=3e-124]} {Dmel: FBgn0020309, crol, crooked legs, [Score=245, Expect=3e-68]} {Celegans: WBGene00021931, Y55F3AM.14, [Score=154, Expect=1e-38]} {Smed: dd_Smed_v6_8871_0_1, dd_Smed_v6_8871_0_1, [Score=142, Expect=3e-34]} {RNA1509_58288} {RNA1310_6381} {RNA815_979}
43. MligTC455_45300 333 6.94 Mlig455_020728

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_020728 {REF} {Length: 4245} {Pfam: C2H2-type zinc finger [PF13894.8, score=40.5]; Zinc finger, C2H2 type [PF00096.28, score=26.8]; Cysteine rich domain with multizinc binding regions [PF17979.3, score=23.7]} {Dmel: FBgn0036725, CG18265, [RH, Score=55.5, Expect=3e-07]} {Celegans: WBGene00000995, die-1, Dorsal Intercalation and Elongation defect, [RH, Score=58.9, Expect=2e-08]} {Smed: dd_Smed_v6_34785_0_1, dd_Smed_v6_34785_0_1, [RH, Score=121, Expect=1e-28]} {RNA1509_19455} {RNA1310_2166.1, RNA1509_19455} {RNA1509_19455, RNA815_12667}
44. MligTC455_26710 57107 1189.73 Mlig455_000780, Mlig455_000781

Neo: -

Age: logFC(26M/2M)=-0.460

Region-enriched R2: 4.248/0.00001
Region-enriched R3: 3.578/0.00004

 0.95 - - 0.950 - - -

Mlig455_000780 {REF} {Length: 574} {RNA1509_267} {RNA1310_112043} {RNA815_7257.1}

Mlig455_000781 {REF} {Length: 649} {RNA1509_22192, RNA1509_24, RNA1509_2520, RNA1509_267, RNA1509_57785} {RNA1310_112043, RNA1509_22192, RNA1509_24, RNA1509_2520, RNA1509_267, RNA1509_57785} {RNA1509_22192, RNA1509_24, RNA1509_2520, RNA1509_267, RNA1509_57785, RNA815_7257.1}
45. MligTC455_50313 330 6.87 Mlig455_057017

Neo: -

Age: Down-Down-Up

Regeneration-upregulated BL: 4.082

Regeneration-enriched BL: 4.082

 0.95 - - - - - 0.950 Mlig455_057017 {REF} {Length: 4142} {Pfam: PDZ domain [PF00595.26, score=37.7]; RhoGEF domain [PF00621.22, score=37.6]; PDZ domain [PF17820.3, score=31.9]} {Dmel: FBgn0020278, loco, locomotion defects, [Score=55.1, Expect=3e-07]} {Smed: dd_Smed_v6_17732_0_1, dd_Smed_v6_17732_0_1, [Score=58.2, Expect=1e-08]} {RNA1509_36767} {RNA1310_8233.1, RNA1509_36767} {RNA1509_36767, RNA815_33894}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA