M. lignano Tomo-Seq
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Results for MligTC455_18471

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18471 42 0.88 Mlig455_016830

Neo: -

Age: -

 Mlig455_016830 {REF} {Length: 1535} {TRANSSPLICED} {RNA1509_24487} {RNA1310_16089.1} {RNA815_13960}

Cumulative graph for MligTC455_18471

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.898 1.413 0.99958 1.00000
RegionR2 1.462 1.413 0.32260 0.71471
RegionR3 1.184 1.413 0.34741 0.88240
RegionR4 1.564 1.413 0.27461 0.58123
RegionR5 1.787 1.413 0.13646 0.37830
RegionR6 1.001 1.413 0.42023 0.98754
RegionR7 -2.685 1.413 0.99980 1.00000
RegionR8 -2.415 1.413 0.99983 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.747 1.413 0.99995 1.00000
RegenerationR2 -1.119 1.413 0.23805 0.68607
RegenerationR3 0.361 1.413 0.74778 0.96370
RegenerationR4 0.512 1.413 0.67367 0.94361
RegenerationR5 0.294 1.413 0.75908 0.97516
RegenerationR6 1.049 1.413 0.33601 0.68227
RegenerationBL 2.886 1.413 0.14718 0.45799
RegenerationTP 2.214 1.413 0.41669 0.84163


Genes with expression patterns similar to MligTC455_18471

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18471 42 0.88 Mlig455_016830

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_016830 {REF} {Length: 1535} {TRANSSPLICED} {RNA1509_24487} {RNA1310_16089.1} {RNA815_13960}
2. MligTC455_50151 340 7.09 Mlig455_056050

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.337

Region-enriched R5: 1.672/0.04901

 BDH1 1.662 - - - 0.704 - 0.958 Mlig455_056050 {REF} {Length: 2192} {TRANSSPLICED} {Pfam: Mitochondrial pyruvate carriers [PF03650.15, score=140.6]; short chain dehydrogenase [PF00106.27, score=139.7]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=96.7]; KR domain [PF08659.12, score=20.2]} {Human: ENSG00000275544, BDH1, 3-hydroxybutyrate dehydrogenase 1, [Score=171, Expect=3e-48]; ENSG00000161267, BDH1, 3-hydroxybutyrate dehydrogenase 1, [Score=171, Expect=3e-48]} {Mouse: ENSMUSG00000046598, Bdh1, 3-hydroxybutyrate dehydrogenase, type 1, [Score=175, Expect=1e-49]} {Dmel: FBgn0037715, CG9399, [RH, Score=149, Expect=9e-43]} {Celegans: WBGene00018765, mpc-2, Probable mitochondrial pyruvate carrier 2, [RH, Score=135, Expect=1e-37]} {Smed: dd_Smed_v6_6084_0_1, dd_Smed_v6_6084_0_1, [RH, Score=179, Expect=1e-54]} {RNA1509_18804} {RNA1310_15769} {RNA815_8900.1}
3. MligTC455_54330 7696 160.34 Mlig455_041323, Mlig455_041349, Mlig455_056238

Neo: Neoblast, stringent

Age: Down-Up-Up, logFC(26M/2M)=0.208

 RBBP4 0.99 - - - - 0.990 -

Mlig455_041323 {REF} {Length: 1697} {TRANSSPLICED} {Pfam: Histone-binding protein RBBP4 or subunit C of CAF1 complex [PF12265.10, score=99.4]; WD domain, G-beta repeat [PF00400.34, score=98.8]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=24.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=21.4]} {Human: ENSG00000162521, RBBP4, RB binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSG00000102054, RBBP7, RB binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Mouse: ENSMUSG00000057236, Rbbp4, retinoblastoma binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSMUSG00000031353, Rbbp7, retinoblastoma binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Dmel: FBgn0263979, Caf1-55, Chromatin assembly factor 1, p55 subunit, [RH, Score=743, Expect=0.0]} {Celegans: WBGene00003036, lin-53, Probable histone-binding protein lin-53, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_2065_0_1, dd_Smed_v6_2065_0_1, [RH, Score=711, Expect=0.0]} {RNA1509_10409} {RNA1310_2174.1} {RNA815_6795}

Mlig455_041349 {REF} {Length: 1697} {TRANSSPLICED} {Pfam: Histone-binding protein RBBP4 or subunit C of CAF1 complex [PF12265.10, score=99.4]; WD domain, G-beta repeat [PF00400.34, score=98.8]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=24.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=21.4]} {Human: ENSG00000162521, RBBP4, RB binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSG00000102054, RBBP7, RB binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Mouse: ENSMUSG00000057236, Rbbp4, retinoblastoma binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSMUSG00000031353, Rbbp7, retinoblastoma binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Dmel: FBgn0263979, Caf1-55, Chromatin assembly factor 1, p55 subunit, [RH, Score=743, Expect=0.0]} {Celegans: WBGene00003036, lin-53, Probable histone-binding protein lin-53, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_2065_0_1, dd_Smed_v6_2065_0_1, [RH, Score=711, Expect=0.0]} {RNA1509_10409} {RNA1310_2174.1} {RNA815_6795}

Mlig455_056238 {REF} {Length: 1697} {TRANSSPLICED} {Pfam: Histone-binding protein RBBP4 or subunit C of CAF1 complex [PF12265.10, score=99.4]; WD domain, G-beta repeat [PF00400.34, score=98.8]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=24.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=21.4]} {Human: ENSG00000162521, RBBP4, RB binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSG00000102054, RBBP7, RB binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Mouse: ENSMUSG00000057236, Rbbp4, retinoblastoma binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSMUSG00000031353, Rbbp7, retinoblastoma binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Dmel: FBgn0263979, Caf1-55, Chromatin assembly factor 1, p55 subunit, [RH, Score=743, Expect=0.0]} {Celegans: WBGene00003036, lin-53, Probable histone-binding protein lin-53, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_2065_0_1, dd_Smed_v6_2065_0_1, [RH, Score=711, Expect=0.0]} {RNA1509_10409, RNA1509_44954, RNA1509_51345} {RNA1310_2174.1, RNA1509_10409, RNA1509_44954, RNA1509_51345} {RNA1509_10409, RNA1509_44954, RNA1509_51345, RNA815_6795}
4. MligTC455_26595 154 3.21 Mlig455_025232

Neo: -

Age: -

 APEH 0.96 - - 0.960 - - - Mlig455_025232 {REF} {Length: 2791} {TRANSSPLICED} {Pfam: Prolyl oligopeptidase family [PF00326.23, score=163.9]; Dienelactone hydrolase family [PF01738.20, score=26.9]; X-Pro dipeptidyl-peptidase (S15 family) [PF02129.20, score=23.1]; Serine aminopeptidase, S33 [PF12146.10, score=19.1]} {Human: ENSG00000164062, APEH, acylaminoacyl-peptide hydrolase, [Score=81.3, Expect=3e-15]} {Mouse: ENSMUSG00000032590, Apeh, acylpeptide hydrolase, [Score=89.0, Expect=7e-18]} {Celegans: WBGene00001057, dpf-4, Dipeptidyl Peptidase Four (IV) family, [RH, Score=367, Expect=2e-118]} {Smed: dd_Smed_v6_3723_0_1, dd_Smed_v6_3723_0_1, [RH, Score=466, Expect=1e-156]} {RNA1509_3789} {RNA1310_6314.1} {RNA815_1799}
5. MligTC455_35453 76 1.58 Mlig455_034810, Mlig455_047899, Mlig455_047985

Neo: Germline

Age: -

Region-enriched R5: 2.528/0.04280

 0.96 - - 0.960 - - -

Mlig455_034810 {REF} {Length: 182} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_45210} {RNA1310_121697}

Mlig455_047899 {REF} {Length: 1196} {RNA1509_55040} {RNA1310_81175} {RNA815_38567}

Mlig455_047985 {REF} {Length: 454} {NoTransDecoderORF} {RNA1509_45210} {RNA1310_28413.1} {RNA815_41251}
6. MligTC455_16981 175 3.66 Mlig455_067617

Neo: Irradiation

Age: Up-Down-Up

 ZCCHC10 0.952 - - - - - 0.952 Mlig455_067617 {REF} {Length: 1386} {TRANSSPLICED} {Pfam: Zinc knuckle [PF13917.8, score=50.4]; Nuclear RNA-splicing-associated protein [PF10500.11, score=19.7]} {Human: ENSG00000155329, ZCCHC10, zinc finger CCHC-type containing 10, [RH, Score=63.2, Expect=2e-12]} {Mouse: ENSMUSG00000018239, Zcchc10, zinc finger, CCHC domain containing 10, [RH, Score=60.5, Expect=2e-11]} {Dmel: FBgn0038389, CG5516, [RH, Score=56.2, Expect=4e-10]} {Smed: dd_Smed_v6_6155_0_1, dd_Smed_v6_6155_0_1, [RH, Score=47.8, Expect=2e-07]} {RNA1509_11923, RNA1509_27692, RNA1509_58107} {RNA1310_34233.1, RNA1509_11923, RNA1509_27692, RNA1509_58107} {RNA1509_11923, RNA1509_27692, RNA1509_58107, RNA815_13751.2}

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