M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_18575

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18575 193 4.02 Mlig455_003611

Neo: -

Age: -

 MTERF3 Mlig455_003611 {REF} {Length: 3717} {TRANSSPLICED} {Pfam: mTERF [PF02536.16, score=42.7]} {Human: ENSG00000156469, MTERF3, mitochondrial transcription termination factor 3, [RH, Score=119, Expect=2e-30]} {Mouse: ENSMUSG00000021519, Mterf3, mitochondrial transcription termination factor 3, [RH, Score=117, Expect=2e-29]} {Dmel: FBgn0037008, mTerf3, mitochondrial transcription termination factor 3, [RH, Score=119, Expect=2e-30]} {Smed: dd_Smed_v6_10622_0_1, dd_Smed_v6_10622_0_1, [RH, Score=81.3, Expect=7e-17]} {RNA1509_24083} {RNA1310_26958.1, RNA1509_24083} {RNA1509_24083, RNA815_9659}

Cumulative graph for MligTC455_18575

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.988 2.756 0.30019 0.94957
RegionR2 0.521 2.756 0.62007 0.96443
RegionR3 0.794 2.756 0.39878 0.92806
RegionR4 1.434 2.756 0.14221 0.38618
RegionR5 1.109 2.756 0.18373 0.46300
RegionR6 0.739 2.756 0.44325 1.00000
RegionR7 1.242 2.756 0.24459 0.87152
RegionR8 -0.852 2.756 0.98219 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.422 2.756 0.99988 1.00000
RegenerationR2 -0.58 2.756 0.39493 0.81154
RegenerationR3 -0.359 2.756 0.60677 0.91130
RegenerationR4 0.226 2.756 0.73580 0.96622
RegenerationR5 0.152 2.756 0.79387 0.98722
RegenerationR6 -0.082 2.756 0.91162 1.00000
RegenerationBL -0.337 2.756 0.77732 1.00000
RegenerationTP 0.988 2.756 0.33791 0.78167


Genes with expression patterns similar to MligTC455_18575

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18575 193 4.02 Mlig455_003611

Neo: -

Age: -

 MTERF3 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_003611 {REF} {Length: 3717} {TRANSSPLICED} {Pfam: mTERF [PF02536.16, score=42.7]} {Human: ENSG00000156469, MTERF3, mitochondrial transcription termination factor 3, [RH, Score=119, Expect=2e-30]} {Mouse: ENSMUSG00000021519, Mterf3, mitochondrial transcription termination factor 3, [RH, Score=117, Expect=2e-29]} {Dmel: FBgn0037008, mTerf3, mitochondrial transcription termination factor 3, [RH, Score=119, Expect=2e-30]} {Smed: dd_Smed_v6_10622_0_1, dd_Smed_v6_10622_0_1, [RH, Score=81.3, Expect=7e-17]} {RNA1509_24083} {RNA1310_26958.1, RNA1509_24083} {RNA1509_24083, RNA815_9659}
2. MligTC455_51693 167 3.49 Mlig455_044256

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.641/0.03760

 DLGAP5 0.965 - - - - - 0.965 Mlig455_044256 {REF} {Length: 4473} {TRANSSPLICED} {Pfam: Guanylate-kinase-associated protein (GKAP) protein [PF03359.15, score=72.7]} {Human: ENSG00000126787, DLGAP5, DLG associated protein 5, [RH, Score=56.6, Expect=2e-07]} {Mouse: ENSMUSG00000037544, Dlgap5, DLG associated protein 5, [RH, Score=62.0, Expect=3e-09]} {Dmel: FBgn0034200, Gbp2, Growth-blocking peptide 2, [Score=56.2, Expect=1e-07]} {RNA1509_26988, RNA1509_28231, RNA1509_36821} {RNA1310_11539, RNA1509_28231, RNA1509_36821} {RNA1509_28231, RNA1509_36821, RNA815_2058}
3. MligTC455_35977 222 4.63 Mlig455_047846

Neo: Int S/G2/M

Age: -

 ECT2 0.961 - - - - - 0.961 Mlig455_047846 {REF} {Length: 3281} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=117.9]} {Human: ENSG00000114346, ECT2, epithelial cell transforming 2, [Score=237, Expect=2e-65]} {Mouse: ENSMUSG00000027699, Ect2, ect2 oncogene, [Score=234, Expect=2e-64]} {Dmel: FBgn0003041, pbl, pebble, [Score=208, Expect=1e-57]} {Celegans: WBGene00002297, ect-2, ECT2 (Mammalian Rho GEF) homolog, [RH, Score=120, Expect=1e-27]} {Smed: dd_Smed_v6_6109_0_1, dd_Smed_v6_6109_0_1, [Score=74.7, Expect=1e-13]} {RNA1509_13370} {RNA1310_4384} {RNA815_5972}
4. MligTC455_24685 312 6.49 Mlig455_002532

Neo: Irradiation

Age: Up-Down-Up

Region-specific R4: 4.544

Region-enriched R4: 2.156/0.03459

 PIGW 0.96 - - - - 0.960 - Mlig455_002532 {REF} {Length: 3093} {Pfam: GWT1 [PF06423.14, score=73.1]} {Human: ENSG00000277161, PIGW, phosphatidylinositol glycan anchor biosynthesis class W, [Score=83.6, Expect=2e-16]; ENSG00000275600, PIGW, phosphatidylinositol glycan anchor biosynthesis class W, [Score=83.6, Expect=2e-16]} {Mouse: ENSMUSG00000045140, Pigw, phosphatidylinositol glycan anchor biosynthesis, class W, [Score=94.7, Expect=3e-20]} {Dmel: FBgn0035265, PIG-Wb, Phosphatidylinositol glycan anchor biosynthesis class W b, [RH, Score=105, Expect=8e-24]} {Celegans: WBGene00022447, hpo-20, Phosphatidylinositol-glycan biosynthesis class W protein, [Score=102, Expect=7e-23]} {Smed: dd_Smed_v6_14190_0_1, dd_Smed_v6_14190_0_1, [Score=102, Expect=3e-23]} {RNA1509_11371, RNA1509_28644, RNA1509_52821} {RNA1310_8006.1, RNA1509_11371, RNA1509_28644, RNA1509_52821} {RNA1509_11371, RNA1509_28644, RNA1509_52821, RNA815_6043.1}
5. MligTC455_15211 343 7.14 Mlig455_051793

Neo: -

Age: -

 MRM3 0.959 - - - - - 0.959 Mlig455_051793 {REF} {Length: 1880} {TRANSSPLICED} {Pfam: SpoU rRNA Methylase family [PF00588.21, score=73.1]; Lysine methyltransferase [PF10294.11, score=50.8]; Methyltransferase domain [PF13649.8, score=25.3]; Methyltransferase small domain [PF05175.16, score=18.4]} {Human: ENSG00000171861, MRM3, mitochondrial rRNA methyltransferase 3, [RH, Score=78.2, Expect=7e-15]} {Mouse: ENSMUSG00000038046, Mrm3, mitochondrial rRNA methyltransferase 3, [RH, Score=82.4, Expect=2e-16]} {Dmel: FBgn0038396, CG5013, [RH, Score=67.4, Expect=3e-12]} {Celegans: WBGene00011144, R08D7.4, [Score=53.5, Expect=2e-07]} {Smed: dd_Smed_v6_26966_0_1, dd_Smed_v6_26966_0_1, [Score=63.5, Expect=2e-11]} {RNA1509_54824} {RNA1310_31723.1} {RNA815_17464}
6. MligTC455_23338 206 4.29 Mlig455_033045, Mlig455_053128

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.721

 NEFH 0.952 - - - 0.952 - -

Mlig455_033045 {REF} {Length: 9317} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=111, Expect=1e-24]} {Dmel: FBgn0029807, CG3108, [Score=53.1, Expect=8e-07]} {RNA1509_6333} {RNA1310_785} {RNA815_2080}

Mlig455_053128 {REF} {Length: 16958} {Human: ENSG00000100285, NEFH, neurofilament heavy, [Score=51.6, Expect=5e-06]} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=114, Expect=1e-25]} {Dmel: FBgn0029807, CG3108, [Score=52.4, Expect=1e-06]} {RNA1509_28919, RNA1509_6333} {RNA1310_785, RNA1509_28919} {RNA1509_28919, RNA815_2080}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA