M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_35977

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_35977 222 4.63 Mlig455_047846

Neo: Int S/G2/M

Age: -

 ECT2 Mlig455_047846 {REF} {Length: 3281} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=117.9]} {Human: ENSG00000114346, ECT2, epithelial cell transforming 2, [Score=237, Expect=2e-65]} {Mouse: ENSMUSG00000027699, Ect2, ect2 oncogene, [Score=234, Expect=2e-64]} {Dmel: FBgn0003041, pbl, pebble, [Score=208, Expect=1e-57]} {Celegans: WBGene00002297, ect-2, ECT2 (Mammalian Rho GEF) homolog, [RH, Score=120, Expect=1e-27]} {Smed: dd_Smed_v6_6109_0_1, dd_Smed_v6_6109_0_1, [Score=74.7, Expect=1e-13]} {RNA1509_13370} {RNA1310_4384} {RNA815_5972}

Cumulative graph for MligTC455_35977

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.133 2.995 0.99964 1.00000
RegionR2 0.708 2.995 0.51650 0.89205
RegionR3 1.236 2.995 0.23344 0.77562
RegionR4 2.203 2.995 0.02458 0.11792
RegionR5 1.741 2.995 0.04921 0.18538
RegionR6 2.04 2.995 0.02703 0.30164
RegionR7 1.865 2.995 0.12667 0.67088
RegionR8 -4.66 2.995 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.968 2.995 0.99987 1.00000
RegenerationR2 1.581 2.995 0.01304 0.18563
RegenerationR3 1.035 2.995 0.10130 0.50631
RegenerationR4 0.545 2.995 0.35955 0.78706
RegenerationR5 1.202 2.995 0.01675 0.22502
RegenerationR6 0.949 2.995 0.09944 0.39174
RegenerationBL 2.515 2.995 0.05144 0.26125
RegenerationTP 3.315 2.995 0.05136 0.37120


Genes with expression patterns similar to MligTC455_35977

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_35977 222 4.63 Mlig455_047846

Neo: Int S/G2/M

Age: -

 ECT2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_047846 {REF} {Length: 3281} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=117.9]} {Human: ENSG00000114346, ECT2, epithelial cell transforming 2, [Score=237, Expect=2e-65]} {Mouse: ENSMUSG00000027699, Ect2, ect2 oncogene, [Score=234, Expect=2e-64]} {Dmel: FBgn0003041, pbl, pebble, [Score=208, Expect=1e-57]} {Celegans: WBGene00002297, ect-2, ECT2 (Mammalian Rho GEF) homolog, [RH, Score=120, Expect=1e-27]} {Smed: dd_Smed_v6_6109_0_1, dd_Smed_v6_6109_0_1, [Score=74.7, Expect=1e-13]} {RNA1509_13370} {RNA1310_4384} {RNA815_5972}
2. MligTC455_29329 1510 31.46 Mlig455_011494

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.318

 OLA1 2.423 - - - 0.731 0.955 0.737 Mlig455_011494 {REF} {Length: 1556} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF933) [PF06071.15, score=132.0]; 50S ribosome-binding GTPase [PF01926.25, score=52.8]; Ferrous iron transport protein B [PF02421.20, score=28.4]} {Human: ENSG00000138430, OLA1, Obg like ATPase 1, [Score=457, Expect=8e-161]} {Mouse: ENSMUSG00000027108, Ola1, Obg-like ATPase 1, [Score=456, Expect=1e-160]} {Dmel: FBgn0030151, CG1354, [Score=477, Expect=6e-169]} {Celegans: WBGene00012344, ola-1, Obg-like ATPase 1, [Score=466, Expect=1e-164]} {Smed: dd_Smed_v6_2199_0_1, dd_Smed_v6_2199_0_1, [Score=481, Expect=8e-171]} {RNA1509_3669} {RNA1310_18424} {RNA815_7325}
3. MligTC455_35319 995 20.74 Mlig455_038578

Neo: -

Age: -

Region-enriched R4: 1.602/0.03291

 ADHFE1 1.841 - - - 0.880 0.961 - Mlig455_038578 {REF} {Length: 1907} {TRANSSPLICED} {Pfam: Iron-containing alcohol dehydrogenase [PF00465.21, score=346.9]; Iron-containing alcohol dehydrogenase [PF13685.8, score=53.3]; Periplasmic binding protein [PF13458.8, score=20.7]} {Human: ENSG00000147576, ADHFE1, alcohol dehydrogenase, iron containing 1, [RH, Score=519, Expect=0.0]} {Mouse: ENSMUSG00000025911, Adhfe1, alcohol dehydrogenase, iron containing, 1, [RH, Score=516, Expect=0.0]} {Dmel: FBgn0017482, T3dh, Type III alcohol dehydrogenase, [RH, Score=495, Expect=3e-173]} {Celegans: WBGene00012608, hphd-1, Hydroxyacid-oxoacid transhydrogenase, mitochondrial, [RH, Score=448, Expect=8e-155]} {Smed: dd_Smed_v6_4554_0_2, dd_Smed_v6_4554_0_2, [RH, Score=498, Expect=2e-174]} {RNA1509_2515} {RNA1310_11167.2, RNA1509_2515} {RNA1509_2515, RNA815_5063}
4. MligTC455_19269 2767 57.65 Mlig455_000008

Neo: -

Age: -

 WASHC3 1.764 - - - - 0.954 0.810 Mlig455_000008 {REF} {Length: 1194} {TRANSSPLICED} {Pfam: Subunit CCDC53 of WASH complex [PF10152.11, score=127.7]} {Human: ENSG00000120860, WASHC3, WASH complex subunit 3, [RH, Score=114, Expect=3e-31]} {Mouse: ENSMUSG00000020056, Washc3, WASH complex subunit 3, [RH, Score=113, Expect=3e-31]} {Dmel: FBgn0031979, CCDC53, Coiled-coil domain containing 53, [RH, Score=99.0, Expect=7e-26]} {Celegans: WBGene00019125, ddl-1, WASH complex subunit homolog 3, [Score=62.8, Expect=3e-12]} {RNA1509_22435, RNA1509_39290} {RNA1310_32670, RNA1509_22435} {RNA1509_22435, RNA815_15168.1}
5. MligTC455_21685 642 13.38 Mlig455_016564

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.464

 1.743 - - - 0.791 0.952 - Mlig455_016564 {REF} {Length: 1396} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF13428.8, score=28.9]; Tetratricopeptide repeat [PF07719.19, score=25.8]} {Smed: dd_Smed_v6_438_0_1, dd_Smed_v6_438_0_1, [RH, Score=104, Expect=5e-25]} {RNA1509_14239, RNA1509_58624} {RNA1310_24039.2, RNA1509_58624} {RNA1509_58624, RNA815_28568}
6. MligTC455_47802 1854 38.62 Mlig455_004785, Mlig455_004802, Mlig455_004870

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.149/0.01600

 SALL4 1.69 - - - 0.734 0.956 -

Mlig455_004785 {REF} {Length: 2040} {TRANSSPLICED} {Human: ENSG00000101115, SALL4, spalt like transcription factor 4, [Score=57.8, Expect=4e-08]} {Mouse: ENSMUSG00000027547, Sall4, spalt like transcription factor 4, [Score=50.4, Expect=5e-06]} {Dmel: FBgn0020309, crol, crooked legs, [Score=63.5, Expect=3e-10]} {RNA1509_20041, RNA1509_59408} {RNA1310_13372.1, RNA1509_59408} {RNA1509_59408, RNA815_4186}

Mlig455_004802 {REF} {Length: 2027} {TRANSSPLICED} {Human: ENSG00000101115, SALL4, spalt like transcription factor 4, [Score=56.2, Expect=1e-07]} {Mouse: ENSMUSG00000027547, Sall4, spalt like transcription factor 4, [Score=49.3, Expect=1e-05]} {RNA1509_59408} {RNA1310_13372.1} {RNA815_4186}

Mlig455_004870 {REF} {Length: 2032} {TRANSSPLICED} {Human: ENSG00000101115, SALL4, spalt like transcription factor 4, [Score=58.5, Expect=2e-08]} {RNA1509_20041} {RNA1310_13372.1, RNA1509_20041} {RNA1509_20041, RNA815_4186}
7. MligTC455_22155 1704 35.5 Mlig455_016037

Neo: -

Age: logFC(26M/2M)=0.344

Region-enriched R4: 1.404/0.01031
Region-enriched R5: 1.154/0.00691

 IFRD1 1.686 - 0.734 - - 0.952 - Mlig455_016037 {REF} {Length: 1941} {TRANSSPLICED} {Pfam: Interferon-related developmental regulator (IFRD) [PF05004.15, score=187.5]; Interferon-related protein conserved region [PF04836.14, score=33.3]} {Human: ENSG00000006652, IFRD1, interferon related developmental regulator 1, [RH, Score=159, Expect=2e-43]} {Mouse: ENSMUSG00000001627, Ifrd1, interferon-related developmental regulator 1, [RH, Score=162, Expect=1e-44]} {Dmel: FBgn0051694, CG31694, [RH, Score=172, Expect=2e-48]} {Celegans: WBGene00010232, F58B3.6, [RH, Score=72.4, Expect=1e-13]} {Smed: dd_Smed_v6_5819_0_1, dd_Smed_v6_5819_0_1, [RH, Score=181, Expect=6e-52]} {RNA1509_2396, RNA1509_5679} {RNA1310_14644, RNA1509_2396, RNA1509_5679} {RNA1509_2396, RNA1509_5679, RNA815_5470}
8. MligTC455_45279 7367 153.48 Mlig455_039067

Neo: -

Age: -

Region-enriched R5: 1.276/0.00000

 EIF3M 1.667 - - - - 0.962 0.705 Mlig455_039067 {REF} {Length: 1937} {Pfam: PCI domain [PF01399.29, score=43.8]; eIF3 subunit M, C-terminal helix [PF18005.3, score=34.3]} {Human: ENSG00000149100, EIF3M, eukaryotic translation initiation factor 3 subunit M, [RH, Score=263, Expect=3e-84]} {Mouse: ENSMUSG00000027170, Eif3m, eukaryotic translation initiation factor 3, subunit M, [RH, Score=264, Expect=2e-84]} {Dmel: FBgn0033902, eIF3m, eukaryotic translation initiation factor 3 subunit m, [RH, Score=211, Expect=4e-64]} {Celegans: WBGene00019543, cif-1, COP9/Signalosome and eIF3 complex-shared subunit 1, [RH, Score=130, Expect=5e-34]} {Smed: dd_Smed_v6_2680_0_1, dd_Smed_v6_2680_0_1, [RH, Score=204, Expect=9e-62]} {RNA1509_1366} {RNA1310_21426} {RNA815_8400}
9. MligTC455_29328 4630 96.46 Mlig455_002744

Neo: Neoblast

Age: Down-Up-Up, logFC(26M/2M)=0.336

Region-enriched R5: 1.062/0.00000

 OLA1 0.97 - - - - 0.970 - Mlig455_002744 {REF} {Length: 1655} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF933) [PF06071.15, score=132.0]; 50S ribosome-binding GTPase [PF01926.25, score=77.4]; Ferrous iron transport protein B [PF02421.20, score=28.6]} {Human: ENSG00000138430, OLA1, Obg like ATPase 1, [RH, Score=526, Expect=0.0]} {Mouse: ENSMUSG00000027108, Ola1, Obg-like ATPase 1, [RH, Score=524, Expect=0.0]} {Dmel: FBgn0030151, CG1354, [RH, Score=546, Expect=0.0]} {Celegans: WBGene00012344, ola-1, Obg-like ATPase 1, [RH, Score=544, Expect=0.0]} {Smed: dd_Smed_v6_2199_0_1, dd_Smed_v6_2199_0_1, [RH, Score=551, Expect=0.0]} {RNA1509_25859, RNA1509_3669, RNA1509_5575, RNA1509_9311} {RNA1310_18424, RNA1509_25859, RNA1509_3669, RNA1509_5575, RNA1509_9311} {RNA1509_25859, RNA1509_3669, RNA1509_5575, RNA1509_9311, RNA815_7325}
10. MligTC455_18575 193 4.02 Mlig455_003611

Neo: -

Age: -

 MTERF3 0.961 - - - - - 0.961 Mlig455_003611 {REF} {Length: 3717} {TRANSSPLICED} {Pfam: mTERF [PF02536.16, score=42.7]} {Human: ENSG00000156469, MTERF3, mitochondrial transcription termination factor 3, [RH, Score=119, Expect=2e-30]} {Mouse: ENSMUSG00000021519, Mterf3, mitochondrial transcription termination factor 3, [RH, Score=117, Expect=2e-29]} {Dmel: FBgn0037008, mTerf3, mitochondrial transcription termination factor 3, [RH, Score=119, Expect=2e-30]} {Smed: dd_Smed_v6_10622_0_1, dd_Smed_v6_10622_0_1, [RH, Score=81.3, Expect=7e-17]} {RNA1509_24083} {RNA1310_26958.1, RNA1509_24083} {RNA1509_24083, RNA815_9659}
11. MligTC455_48825 12485 260.1 Mlig455_014264

Neo: -

Age: logFC(26M/2M)=0.344

 PDIA3 0.961 - - - - 0.961 - Mlig455_014264 {REF} {Length: 2226} {Pfam: Thioredoxin [PF00085.22, score=219.0]; Thioredoxin-like domain [PF13848.8, score=97.5]; Thioredoxin-like domain [PF13098.8, score=31.6]; Thioredoxin-like [PF13905.8, score=30.7]; Thioredoxin-like [PF13899.8, score=26.5]; AhpC/TSA family [PF00578.23, score=22.2]} {Human: ENSG00000167004, PDIA3, protein disulfide isomerase family A member 3, [RH, Score=488, Expect=1e-169]} {Mouse: ENSMUSG00000027248, Pdia3, protein disulfide isomerase associated 3, [RH, Score=485, Expect=1e-168]} {Dmel: FBgn0033663, ERp60, [RH, Score=487, Expect=9e-170]} {Celegans: WBGene00003964, pdi-3, [RH, Score=490, Expect=4e-171]} {Smed: dd_Smed_v6_426_0_1, dd_Smed_v6_426_0_1, [RH, Score=570, Expect=0.0]} {RNA1509_3091, RNA1509_36778, RNA1509_7388, RNA1509_764, RNA1509_9687} {RNA1310_7785, RNA1509_3091, RNA1509_36778, RNA1509_7388, RNA1509_9687} {RNA1509_3091, RNA1509_36778, RNA1509_7388, RNA1509_9687, RNA815_3218.1}
12. MligTC455_44587 243 5.07 Mlig455_013336

Neo: -

Age: -

Regeneration-upregulated R3: 2.427

Regeneration-enriched R3: 2.427

 ILF2 0.96 - - - - 0.960 - Mlig455_013336 {REF} {Length: 1894} {Pfam: DZF domain [PF07528.16, score=282.6]} {Human: ENSG00000143621, ILF2, interleukin enhancer binding factor 2, [RH, Score=400, Expect=8e-138]} {Mouse: ENSMUSG00000001016, Ilf2, interleukin enhancer binding factor 2, [RH, Score=400, Expect=5e-138]} {Dmel: FBgn0038046, CG5641, [RH, Score=387, Expect=1e-132]} {Celegans: WBGene00011253, R11H6.5, [RH, Score=156, Expect=2e-43]} {Smed: dd_Smed_v6_3548_0_1, dd_Smed_v6_3548_0_1, [RH, Score=401, Expect=2e-138]} {RNA1509_14247} {RNA1310_13620.1} {RNA815_6092}
13. MligTC455_26924 323 6.73 Mlig455_032005

Neo: Irradiation

Age: Down-Down-Up

Region-enriched R5: 1.860/0.04273

 ERAL1 0.959 - - - - - 0.959 Mlig455_032005 {REF} {Length: 1862} {TRANSSPLICED} {Pfam: 50S ribosome-binding GTPase [PF01926.25, score=55.9]; RsgA GTPase [PF03193.18, score=26.3]; Ferrous iron transport protein B [PF02421.20, score=24.1]; Dynamin family [PF00350.25, score=21.7]; AIG1 family [PF04548.18, score=19.0]} {Human: ENSG00000132591, ERAL1, Era like 12S mitochondrial rRNA chaperone 1, [RH, Score=105, Expect=1e-23]} {Mouse: ENSMUSG00000020832, Eral1, Era (G-protein)-like 1 (E. coli), [RH, Score=112, Expect=2e-26]} {Dmel: FBgn0038106, CG7488, [RH, Score=108, Expect=2e-25]} {Celegans: WBGene00008456, E02H1.2, Uncharacterized GTP-binding protein E02H1.2, [RH, Score=66.2, Expect=2e-11]} {Smed: dd_Smed_v6_6692_0_1, dd_Smed_v6_6692_0_1, [RH, Score=338, Expect=2e-109]} {RNA1509_30965} {RNA1310_16177.2} {RNA815_3293}
14. MligTC455_45280 7348 153.08 Mlig455_042762

Neo: -

Age: -

Region-enriched R5: 1.275/0.00000

 EIF3M 0.959 - - - - 0.959 - Mlig455_042762 {REF} {Length: 1378} {TRANSSPLICED} {Pfam: PCI domain [PF01399.29, score=43.7]; eIF3 subunit M, C-terminal helix [PF18005.3, score=34.3]} {Human: ENSG00000149100, EIF3M, eukaryotic translation initiation factor 3 subunit M, [RH, Score=264, Expect=2e-84]} {Mouse: ENSMUSG00000027170, Eif3m, eukaryotic translation initiation factor 3, subunit M, [RH, Score=264, Expect=1e-84]} {Dmel: FBgn0033902, eIF3m, eukaryotic translation initiation factor 3 subunit m, [RH, Score=211, Expect=2e-64]} {Celegans: WBGene00019543, cif-1, COP9/Signalosome and eIF3 complex-shared subunit 1, [RH, Score=131, Expect=4e-34]} {Smed: dd_Smed_v6_2680_0_1, dd_Smed_v6_2680_0_1, [RH, Score=205, Expect=4e-62]} {RNA1509_1366} {RNA1310_17297.1} {RNA815_8400}
15. MligTC455_21090 421 8.77 Mlig455_014954

Neo: -

Age: logFC(26M/2M)=-0.316

 TRPM1 0.956 - - - 0.956 - - Mlig455_014954 {REF} {Length: 4595} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=64.3]; Ankyrin repeats (many copies) [PF13637.8, score=58.9]; Ankyrin repeats (many copies) [PF13857.8, score=52.6]; Ion transport protein [PF00520.33, score=47.9]; Ankyrin repeat [PF13606.8, score=39.1]; Ankyrin repeat [PF00023.32, score=35.0]} {Human: ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=168, Expect=2e-41]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=168, Expect=1e-41]; ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=160, Expect=3e-39]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=163, Expect=3e-40]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=160, Expect=4e-39]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=125, Expect=1e-28]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=90.9, Expect=4e-18]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=188, Expect=1e-48]} {RNA1509_3562} {RNA1310_2118.1} {RNA815_362.1}
16. MligTC455_17189 979 20.39 Mlig455_060262

Neo: -

Age: Down-Down-Up

 MCRS1 0.952 - - - - 0.952 - Mlig455_060262 {REF} {Length: 2447} {TRANSSPLICED} {Pfam: N-terminal region of micro-spherule protein [PF13325.8, score=88.1]} {Human: ENSG00000187778, MCRS1, microspherule protein 1, [Score=90.5, Expect=3e-19]} {Mouse: ENSMUSG00000037570, Mcrs1, microspherule protein 1, [Score=93.2, Expect=2e-20]} {Dmel: FBgn0263832, Rcd5, Reduction in Cnn dots 5, [Score=80.1, Expect=4e-16]} {Celegans: WBGene00018026, F35A5.4, [Score=48.9, Expect=4e-06]} {Smed: dd_Smed_v6_4102_0_1, dd_Smed_v6_4102_0_1, [Score=77.8, Expect=1e-15]} {RNA1509_8483} {RNA1310_19335} {RNA815_6260}
17. MligTC455_34877 955 19.91 Mlig455_065257

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.514

 0.95 - - - - 0.950 - Mlig455_065257 {REF} {Length: 487} {NoTransDecoderORF} {RNA1509_10265, RNA1509_28512} {RNA1310_77064, RNA1509_10265, RNA1509_28512} {RNA1509_10265, RNA1509_28512, RNA815_41883}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA