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Results for MligTC455_18635

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18635 119 2.49 Mlig455_046855

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.668

 RTL1 Mlig455_046855 {REF} {Length: 5400} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=104.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=70.2]; Integrase zinc binding domain [PF17921.3, score=56.6]; Integrase core domain [PF00665.28, score=50.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.7]; Aspartyl protease [PF13650.8, score=21.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=75.5, Expect=6e-13]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=282, Expect=7e-79]} {RNA1509_46414} {RNA1310_11995} {RNA815_23477.2}

Cumulative graph for MligTC455_18635

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.001 2.171 1.00000 1.00000
RegionR2 0.212 2.171 0.70863 1.00000
RegionR3 1.588 2.171 0.13862 0.63594
RegionR4 1.865 2.171 0.09379 0.29473
RegionR5 1.83 2.171 0.05421 0.19852
RegionR6 1.587 2.171 0.14904 0.68814
RegionR7 1.042 2.171 0.43593 1.00000
RegionR8 -4.124 2.171 0.99979 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.984 2.171 0.21673 0.95327
RegenerationR2 0.01 2.171 0.98272 1.00000
RegenerationR3 -1.517 2.171 0.04020 0.35279
RegenerationR4 -0.471 2.171 0.47031 0.85363
RegenerationR5 -1.238 2.171 0.04794 0.35398
RegenerationR6 -0.834 2.171 0.25049 0.59975
RegenerationBL -3.971 2.171 0.99995 1.00000
RegenerationTP 0.373 2.171 0.74756 1.00000


Genes with expression patterns similar to MligTC455_18635

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18635 119 2.49 Mlig455_046855

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.668

 RTL1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_046855 {REF} {Length: 5400} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=104.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=70.2]; Integrase zinc binding domain [PF17921.3, score=56.6]; Integrase core domain [PF00665.28, score=50.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.7]; Aspartyl protease [PF13650.8, score=21.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=75.5, Expect=6e-13]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=282, Expect=7e-79]} {RNA1509_46414} {RNA1310_11995} {RNA815_23477.2}
2. MligTC455_17697 251 5.22 Mlig455_057954

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_057954 {REF} {Length: 322} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_53364} {RNA1310_4884} {RNA815_2151}
3. MligTC455_09924 1115 23.24 Mlig455_045933

Neo: Int S/G2/M

Age: Up-Down-Down

 NDUFB5 0.971 - - - - 0.971 - Mlig455_045933 {REF} {Length: 3965} {TRANSSPLICED} {Pfam: NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit [PF09781.11, score=130.0]} {Human: ENSG00000136521, NDUFB5, NADH:ubiquinone oxidoreductase subunit B5, [RH, Score=79.3, Expect=1e-17]} {Dmel: FBgn0011455, ND-SGDH, NADH dehydrogenase (ubiquinone) SGDH subunit, [RH, Score=119, Expect=4e-33]} {Smed: dd_Smed_v6_3120_0_1, dd_Smed_v6_3120_0_1, [RH, Score=93.6, Expect=2e-23]} {RNA1509_13244, RNA1509_27121, RNA1509_43622, RNA1509_44707, RNA1509_53197, RNA1509_8322} {RNA1310_34878, RNA1509_13244, RNA1509_27121, RNA1509_43622, RNA1509_44707, RNA1509_53197, RNA1509_8322} {RNA1509_13244, RNA1509_27121, RNA1509_43622, RNA1509_44707, RNA1509_53197, RNA1509_8322, RNA815_15720}
4. MligTC455_45855 452 9.41 Mlig455_052805

Neo: Germline

Age: -

Region-specific R4: 5.500

Region-enriched R4: 3.088/0.00001

 WSCD1 0.965 - - - - 0.965 - Mlig455_052805 {REF} {Length: 1233} {Pfam: WSC domain [PF01822.21, score=60.1]} {Human: ENSG00000179314, WSCD1, WSC domain containing 1, [Score=56.6, Expect=1e-09]} {Mouse: ENSMUSG00000020811, Wscd1, WSC domain containing 1, [Score=55.8, Expect=2e-09]; ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=54.3, Expect=6e-09]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=47.0, Expect=2e-06]} {RNA1509_13818, RNA1509_47682, RNA1509_49806, RNA1509_53103, RNA1509_53104} {RNA1310_10686, RNA1509_13818, RNA1509_47682, RNA1509_49806, RNA1509_53103, RNA1509_53104} {RNA1509_13818, RNA1509_47682, RNA1509_49806, RNA1509_53103, RNA1509_53104, RNA815_15506}
5. MligTC455_16560 215 4.47 Mlig455_050739

Neo: -

Age: -

 C9orf116 0.959 - - - - 0.959 - Mlig455_050739 {REF} {Length: 1016} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4490) [PF14892.8, score=113.1]} {Human: ENSG00000160345, C9orf116, chromosome 9 open reading frame 116, [RH, Score=81.6, Expect=1e-20]} {Mouse: ENSMUSG00000026831, 1700007K13Rik, RIKEN cDNA 1700007K13 gene, [RH, Score=80.5, Expect=5e-20]} {Dmel: FBgn0083943, CG34107, [Score=64.3, Expect=2e-14]} {Smed: dd_Smed_v6_49903_0_1, dd_Smed_v6_49903_0_1, [RH, Score=75.5, Expect=5e-18]} {RNA1509_25772} {RNA1310_28661.1, RNA1509_25772} {RNA1509_25772, RNA815_31506}
6. MligTC455_12217 33 0.68 Mlig455_068732

Neo: -

Age: Down-Up-Up

 0.956 - - - 0.956 - - Mlig455_068732 {REF} {Length: 3365} {Pfam: High molecular weight glutenin subunit [PF03157.15, score=22.1]} {RNA1310_29196.2} {RNA815_33399}
7. MligTC455_17438 46 0.96 Mlig455_009857

Neo: -

Age: Up-Down-Down

 FBXO11 0.95 - - - 0.950 - - Mlig455_009857 {REF} {Length: 4725} {Pfam: F-box-like [PF12937.9, score=48.8]; F-box domain [PF00646.35, score=34.0]} {Human: ENSG00000138081, FBXO11, F-box protein 11, [RH, Score=52.8, Expect=8e-08]} {Mouse: ENSMUSG00000005371, Fbxo11, F-box protein 11, [Score=51.2, Expect=3e-06]} {Dmel: FBgn0039667, CG2010, [RH, Score=463, Expect=5e-159]} {Celegans: WBGene00020884, T28B4.1, [RH, Score=398, Expect=1e-133]} {Smed: dd_Smed_v6_3719_0_1, dd_Smed_v6_3719_0_1, [RH, Score=592, Expect=0.0]} {RNA1310_14873} {RNA815_6627}
8. MligTC455_18056 478 9.95 Mlig455_010537, Mlig455_061839

Neo: Irradiation

Age: -

 0.95 0.950 - - - - -

Mlig455_010537 {REF} {Length: 1934} {TRANSSPLICED} {Pfam: DNA photolyase [PF00875.20, score=74.8]} {Dmel: FBgn0003082, phr, photorepair, [Score=498, Expect=6e-172]} {Smed: dd_Smed_v6_2829_0_2, dd_Smed_v6_2829_0_2, [Score=460, Expect=9e-158]} {RNA1509_9960} {RNA1310_12679.1} {RNA815_4352.1}

Mlig455_061839 {REF} {Length: 2012} {TRANSSPLICED} {Pfam: DNA photolyase [PF00875.20, score=103.2]} {Mouse: ENSMUSG00000068742, Cry2, cryptochrome 2 (photolyase-like), [Score=51.2, Expect=2e-06]} {Dmel: FBgn0003082, phr, photorepair, [RH, Score=578, Expect=0.0]} {Smed: dd_Smed_v6_2829_0_2, dd_Smed_v6_2829_0_2, [RH, Score=560, Expect=0.0]} {RNA1509_53515, RNA1509_9960} {RNA1310_12679.1, RNA1509_53515} {RNA1509_53515, RNA815_4352.1}
9. MligTC455_18789 422 8.8 Mlig455_041646

Neo: Germline

Age: -

Region-specific R4: 5.245

Region-enriched R4: 3.250/0.00079

 0.95 - - - - 0.950 - Mlig455_041646 {REF} {Length: 1118} {RNA1509_4994, RNA1509_55543, RNA1509_59579} {RNA1310_34184, RNA1509_4994, RNA1509_55543, RNA1509_59579} {RNA1509_4994, RNA1509_55543, RNA1509_59579, RNA815_17665.1}
10. MligTC455_24334 77 1.59 Mlig455_069413

Neo: Germline

Age: Up-Down-Down

Region-enriched R4: 2.672/0.01641

 0.95 - - - - 0.950 - Mlig455_069413 {REF} {Length: 2674} {Smed: dd_Smed_v6_20221_0_2, dd_Smed_v6_20221_0_2, [RH, Score=62.8, Expect=1e-10]} {RNA1509_44068} {RNA1310_9316} {RNA815_2582.1}

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