TomoSeq data search

Data search

Results for MligTC455_17438

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_17438

46

0.96

Mlig455_009857

Neo: -

Age: Up-Down-Down

FBXO11

Mlig455_009857 {REF} {Length: 4725} {Pfam: F-box-like [PF12937.9, score=48.8]; F-box domain [PF00646.35, score=34.0]} {Human: ENSG00000138081, FBXO11, F-box protein 11, [RH, Score=52.8, Expect=8e-08]} {Mouse: ENSMUSG00000005371, Fbxo11, F-box protein 11, [Score=51.2, Expect=3e-06]} {Dmel: FBgn0039667, CG2010, [RH, Score=463, Expect=5e-159]} {Celegans: WBGene00020884, T28B4.1, [RH, Score=398, Expect=1e-133]} {Smed: dd_Smed_v6_3719_0_1, dd_Smed_v6_3719_0_1, [RH, Score=592, Expect=0.0]} {RNA1310_14873} {RNA815_6627}

Cumulative graph for MligTC455_17438

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.308	1.336	0.99969	1.00000
RegionR2	0.724	1.336	0.59623	0.94788
RegionR3	1.915	1.336	0.09815	0.54983
RegionR4	1.832	1.336	0.24825	0.54726
RegionR5	-0.036	1.336	0.78232	1.00000
RegionR6	1.177	1.336	0.36079	0.94381
RegionR7	0.581	1.336	0.65636	1.00000
RegionR8	-3.885	1.336	0.99991	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.724	1.336	0.99985	1.00000
RegenerationR2	0.738	1.336	0.51562	0.87808
RegenerationR3	-0.665	1.336	0.61073	0.91289
RegenerationR4	-0.327	1.336	0.84063	1.00000
RegenerationR5	1.758	1.336	0.09086	0.46332
RegenerationR6	-0.101	1.336	0.98625	1.00000
RegenerationBL	3.783	1.336	0.03749	0.21924
RegenerationTP	3.462	1.336	0.11605	0.52147

Genes with expression patterns similar to MligTC455_17438

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_17438	46	0.96	Mlig455_009857	Neo: - Age: Up-Down-Down	FBXO11	4	1.000	1.000	-	1.000	-	1.000	Mlig455_009857 {REF} {Length: 4725} {Pfam: F-box-like [PF12937.9, score=48.8]; F-box domain [PF00646.35, score=34.0]} {Human: ENSG00000138081, FBXO11, F-box protein 11, [RH, Score=52.8, Expect=8e-08]} {Mouse: ENSMUSG00000005371, Fbxo11, F-box protein 11, [Score=51.2, Expect=3e-06]} {Dmel: FBgn0039667, CG2010, [RH, Score=463, Expect=5e-159]} {Celegans: WBGene00020884, T28B4.1, [RH, Score=398, Expect=1e-133]} {Smed: dd_Smed_v6_3719_0_1, dd_Smed_v6_3719_0_1, [RH, Score=592, Expect=0.0]} {RNA1310_14873} {RNA815_6627}
2.	MligTC455_40194	572	11.92	Mlig455_028533, Mlig455_064723	Neo: - Age: -		0.964	-	-	-	0.964	-	-	Mlig455_028533 {REF} {Length: 1551} {TRANSSPLICED} {Pfam: Apc13p protein [PF05839.13, score=20.4]} {RNA1509_15961} {RNA1310_42883, RNA1509_15961} {RNA1509_15961, RNA815_15235} Mlig455_064723 {REF} {Length: 1560} {TRANSSPLICED} {Pfam: Apc13p protein [PF05839.13, score=20.4]} {RNA1509_15961} {RNA1310_42883} {RNA815_15235}
3.	MligTC455_32278	31	0.65	Mlig455_041080	Neo: - Age: Up-Down-Down	USH2A	0.955	-	-	-	-	-	0.955	Mlig455_041080 {REF} {Length: 15804} {Pfam: Fibronectin type III domain [PF00041.23, score=464.0]; Laminin EGF domain [PF00053.26, score=197.5]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=110.9]; Laminin G domain [PF02210.26, score=79.7]; Laminin G domain [PF00054.25, score=43.4]; Fibronectin type III domain [PF16893.7, score=43.3]; Chitinase A, N-terminal domain [PF08329.12, score=22.2]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=20.5]} {Human: ENSG00000042781, USH2A, usherin, [Score=1148, Expect=0.0]} {Mouse: ENSMUSG00000026609, Ush2a, usherin, [Score=1111, Expect=0.0]} {Dmel: FBgn0261563, wb, wing blister, [Score=265, Expect=7e-70]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=267, Expect=1e-70]} {Smed: dd_Smed_v6_7924_0_5, dd_Smed_v6_7924_0_5, [Score=229, Expect=2e-59]} {RNA1509_43154} {RNA1310_15599} {RNA815_35868}
4.	MligTC455_22114	58	1.2	Mlig455_011205	Neo: - Age: Up-Down-Up		0.952	-	-	-	-	-	0.952	Mlig455_011205 {REF} {Length: 4492} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=67.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=28.1]; gag-polyprotein putative aspartyl protease [PF13975.8, score=24.9]; Integrase core domain [PF13683.8, score=22.7]; Aspartyl protease [PF13650.8, score=22.1]; Integrase core domain [PF00665.28, score=21.9]} {Smed: dd_Smed_v6_6746_0_1, dd_Smed_v6_6746_0_1, [Score=64.3, Expect=2e-10]} {RNA1509_57080} {RNA1310_6076.2} {RNA815_6067.1}
5.	MligTC455_41184	122	2.54	Mlig455_027548	Neo: - Age: -	NR2E1	0.951	-	-	-	-	-	0.951	Mlig455_027548 {REF} {Length: 3026} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=100.4]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=36.9]} {Human: ENSG00000112333, NR2E1, nuclear receptor subfamily 2 group E member 1, [Score=132, Expect=2e-33]} {Mouse: ENSMUSG00000019803, Nr2e1, nuclear receptor subfamily 2, group E, member 1, [Score=134, Expect=3e-34]} {Dmel: FBgn0003720, tll, tailless, [Score=124, Expect=1e-30]} {Celegans: WBGene00021417, nhr-236, Nuclear Hormone Receptor family, [RH, Score=142, Expect=1e-38]} {Smed: dd_Smed_v6_25420_0_1, dd_Smed_v6_25420_0_1, [Score=167, Expect=1e-45]} {RNA1509_35109} {RNA1310_11088} {RNA815_39381}
6.	MligTC455_18635	119	2.49	Mlig455_046855	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-2.668	RTL1	0.95	-	-	-	0.950	-	-	Mlig455_046855 {REF} {Length: 5400} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=104.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=70.2]; Integrase zinc binding domain [PF17921.3, score=56.6]; Integrase core domain [PF00665.28, score=50.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.7]; Aspartyl protease [PF13650.8, score=21.2]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=75.5, Expect=6e-13]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=282, Expect=7e-79]} {RNA1509_46414} {RNA1310_11995} {RNA815_23477.2}

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