TomoSeq data search

Data search

Results for MligTC455_18811

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_18811	24	0.49	Mlig455_004218	Neo: - Age: - Regeneration-upregulated R5: 7.624 Regeneration-enriched R5: 7.624	GRIK4	Mlig455_004218 {REF} {Length: 2840} {Pfam: Ligand-gated ion channel [PF00060.28, score=81.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=49.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=47.5]; Receptor family ligand binding region [PF01094.30, score=26.9]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=156, Expect=1e-38]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=155, Expect=2e-38]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=152, Expect=2e-37]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=155, Expect=2e-38]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=155, Expect=1e-38]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=154, Expect=4e-38]} {Dmel: FBgn0038837, CG3822, [Score=150, Expect=5e-37]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=158, Expect=1e-39]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=249, Expect=7e-75]} {RNA1310_86873}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_18811

0.49

Mlig455_004218

Neo: -

Age: -

Regeneration-upregulated R5: 7.624

Regeneration-enriched R5: 7.624

GRIK4

Mlig455_004218 {REF} {Length: 2840} {Pfam: Ligand-gated ion channel [PF00060.28, score=81.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=49.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=47.5]; Receptor family ligand binding region [PF01094.30, score=26.9]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=156, Expect=1e-38]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=155, Expect=2e-38]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=152, Expect=2e-37]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=155, Expect=2e-38]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=155, Expect=1e-38]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=154, Expect=4e-38]} {Dmel: FBgn0038837, CG3822, [Score=150, Expect=5e-37]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=158, Expect=1e-39]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=249, Expect=7e-75]} {RNA1310_86873}

Cumulative graph for MligTC455_18811

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-6.263	0.964	1.00000	1.00000
RegionR2	5.196	0.964	1.00000	1.00000
RegionR3	1.343	0.964	1.00000	1.00000
RegionR4	-3.86	0.964	0.99984	1.00000
RegionR5	-0.143	0.964	1.00000	1.00000
RegionR6	1.434	0.964	1.00000	1.00000
RegionR7	1.109	0.964	1.00000	1.00000
RegionR8	1.183	0.964	0.99994	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	6.764	0.964	1.00000	1.00000
RegenerationR2	0.733	0.964	0.99988	1.00000
RegenerationR3	5.687	0.964	0.00241	0.08529
RegenerationR4	6.564	0.964	0.00047	0.02075
RegenerationR5	7.624	0.964	0.00002	0.00488	Specific for R5: 7.624
RegenerationR6	4.678	0.964	0.00597	0.09396
RegenerationBL	5.702	0.964	0.00264	0.04330
RegenerationTP	5.021	0.964	0.01357	0.19922

Genes with expression patterns similar to MligTC455_18811

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_18811	24	0.49	Mlig455_004218	Neo: - Age: - Regeneration-upregulated R5: 7.624 Regeneration-enriched R5: 7.624	GRIK4	2	-	-	-	-	1.000	1.000	Mlig455_004218 {REF} {Length: 2840} {Pfam: Ligand-gated ion channel [PF00060.28, score=81.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=49.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=47.5]; Receptor family ligand binding region [PF01094.30, score=26.9]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=156, Expect=1e-38]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=155, Expect=2e-38]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=152, Expect=2e-37]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=155, Expect=2e-38]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=155, Expect=1e-38]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=154, Expect=4e-38]} {Dmel: FBgn0038837, CG3822, [Score=150, Expect=5e-37]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=158, Expect=1e-39]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=249, Expect=7e-75]} {RNA1310_86873}
2.	MligTC455_11189	90	1.88	Mlig455_053930	Neo: - Age: Down-Down-Up, logFC(26M/2M)=0.975		0.973	-	-	-	-	-	0.973	Mlig455_053930 {REF} {Length: 1400} {RNA1509_16583, RNA1509_269, RNA1509_27774, RNA1509_57624} {RNA1310_15377.1, RNA1509_16583, RNA1509_27774, RNA1509_57624} {RNA1509_16583, RNA1509_27774, RNA1509_57624, RNA815_2813.1}
3.	MligTC455_24214	86	1.78	Mlig455_031438	Neo: - Age: -		0.965	-	-	-	-	-	0.965	Mlig455_031438 {REF} {Length: 2355} {RNA1509_15660} {RNA1310_6657.1} {RNA815_2791.1}
4.	MligTC455_35011	387	8.07	Mlig455_060710	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.676	CALML5	0.957	-	-	-	-	-	0.957	Mlig455_060710 {REF} {Length: 1545} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=51.8]; EF-hand domain pair [PF13499.8, score=50.0]; EF-hand domain [PF13405.8, score=42.7]; EF-hand domain pair [PF13833.8, score=41.2]; EF hand [PF13202.8, score=39.4]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=26.6]} {Human: ENSG00000178372, CALML5, calmodulin like 5, [Score=56.2, Expect=3e-10]} {Mouse: ENSMUSG00000005649, Cabp5, calcium binding protein 5, [Score=55.5, Expect=8e-10]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=48.5, Expect=1e-07]} {Celegans: WBGene00006861, cal-5, CALmodulin related genes, [Score=62.8, Expect=6e-13]} {Smed: dd_Smed_v6_11942_0_1, dd_Smed_v6_11942_0_1, [Score=50.4, Expect=2e-08]} {RNA1509_32665} {RNA1310_29494.2, RNA1509_32665} {RNA1509_32665, RNA815_16454.1}
5.	MligTC455_12161	8	0.16	Mlig455_055447	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_055447 {REF} {Length: 907} {RNA1310_61913}