TomoSeq data search

Data search

Results for MligTC455_18889

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_18889

166

3.46

Mlig455_038272

Neo: -

Age: logFC(26M/2M)=0.371

Region-enriched R5: 2.530/0.00157

PCDH11X

Mlig455_038272 {REF} {Length: 4060} {Pfam: Cadherin domain [PF00028.19, score=243.6]; Cadherin-like [PF16184.7, score=34.0]; Cadherin-like [PF08266.14, score=27.2]} {Human: ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=269, Expect=6e-74]; ENSG00000184226, PCDH9, protocadherin 9, [Score=269, Expect=5e-74]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=265, Expect=1e-72]} {Mouse: ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=267, Expect=1e-73]; ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=266, Expect=4e-73]} {Dmel: FBgn0024836, stan, starry night, [Score=213, Expect=6e-56]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=165, Expect=6e-41]} {Smed: dd_Smed_v6_16566_0_2, dd_Smed_v6_16566_0_2, [Score=302, Expect=2e-87]} {RNA1509_44316} {RNA1310_36546, RNA1509_44316} {RNA1509_44316, RNA815_40009}

Cumulative graph for MligTC455_18889

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.089	2.32	0.79586	1.00000
RegionR2	2.252	2.32	0.02587	0.18036
RegionR3	-0.293	2.32	0.86601	1.00000
RegionR4	-2.555	2.32	0.99952	1.00000
RegionR5	2.53	2.32	0.00009	0.00157
RegionR6	1.205	2.32	0.12313	0.63952
RegionR7	-5.154	2.32	0.03417	0.35179
RegionR8	1.926	2.32	0.08944	0.56611

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.498	2.32	0.46016	1.00000
RegenerationR2	-0.108	2.32	0.88331	1.00000
RegenerationR3	0.326	2.32	0.73619	0.95944
RegenerationR4	0.841	2.32	0.41014	0.82057
RegenerationR5	-0.342	2.32	0.62454	0.92034
RegenerationR6	-1.17	2.32	0.22216	0.56662
RegenerationBL	1.986	2.32	0.13247	0.43375
RegenerationTP	1.314	2.32	0.44824	0.86608

Genes with expression patterns similar to MligTC455_18889

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_18889	166	3.46	Mlig455_038272	Neo: - Age: logFC(26M/2M)=0.371 Region-enriched R5: 2.530/0.00157	PCDH11X	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_038272 {REF} {Length: 4060} {Pfam: Cadherin domain [PF00028.19, score=243.6]; Cadherin-like [PF16184.7, score=34.0]; Cadherin-like [PF08266.14, score=27.2]} {Human: ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=269, Expect=6e-74]; ENSG00000184226, PCDH9, protocadherin 9, [Score=269, Expect=5e-74]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=265, Expect=1e-72]} {Mouse: ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=267, Expect=1e-73]; ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=266, Expect=4e-73]} {Dmel: FBgn0024836, stan, starry night, [Score=213, Expect=6e-56]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=165, Expect=6e-41]} {Smed: dd_Smed_v6_16566_0_2, dd_Smed_v6_16566_0_2, [Score=302, Expect=2e-87]} {RNA1509_44316} {RNA1310_36546, RNA1509_44316} {RNA1509_44316, RNA815_40009}
2.	MligTC455_15962	394	8.22	Mlig455_016102	Neo: Irradiation Age: - Region-enriched R5: 1.799/0.00090	MIB2	3.203	0.728	0.952	0.705	-	-	0.818	Mlig455_016102 {REF} {Length: 4719} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=169.0]; Mib_herc2 [PF06701.15, score=160.9]; Ankyrin repeats (many copies) [PF13637.8, score=122.9]; Ankyrin repeats (many copies) [PF13857.8, score=111.6]; Ankyrin repeat [PF00023.32, score=102.2]; Ankyrin repeat [PF13606.8, score=86.2]; Mind bomb SH3 repeat domain [PF18346.3, score=81.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=60.4]; Zinc finger, ZZ type [PF00569.19, score=22.2]} {Human: ENSG00000197530, MIB2, mindbomb E3 ubiquitin protein ligase 2, [RH, Score=564, Expect=0.0]} {Mouse: ENSMUSG00000029060, Mib2, mindbomb E3 ubiquitin protein ligase 2, [RH, Score=493, Expect=8e-159]} {Dmel: FBgn0086442, mib2, mind bomb 2, [RH, Score=555, Expect=0.0]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=124, Expect=2e-28]} {Smed: dd_Smed_v6_6104_0_2, dd_Smed_v6_6104_0_2, [Score=275, Expect=1e-76]} {RNA1509_12439} {RNA1310_3959.1, RNA1509_12439} {RNA1509_12439, RNA815_13244}
3.	MligTC455_52147	129	2.68	Mlig455_002612	Neo: - Age: Down-Up-Up Region-enriched R5: 3.605/0.00022		2.645	0.953	0.851	-	-	-	0.841	Mlig455_002612 {REF} {Length: 1855} {TRANSSPLICED} {RNA1509_36146} {RNA1310_44331} {RNA815_32522}
4.	MligTC455_21046	472	9.84	Mlig455_012022	Neo: Irradiation Age: Down-Up-Down Region-enriched R5: 1.897/0.00007	TMEM41B	1.787	-	0.953	-	-	-	0.834	Mlig455_012022 {REF} {Length: 3884} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF758) [PF05527.13, score=161.1]; SNARE associated Golgi protein [PF09335.13, score=60.4]; Tetratricopeptide repeat [PF00515.30, score=57.8]; Tetratricopeptide repeat [PF07719.19, score=51.7]; TPR repeat [PF13414.8, score=49.5]; Potential Monad-binding region of RPAP3 [PF13877.8, score=40.2]; Tetratricopeptide repeat [PF13181.8, score=37.5]; Tetratricopeptide repeat [PF13371.8, score=29.8]; Tetratricopeptide repeat [PF13432.8, score=24.4]; Tetratricopeptide repeat [PF13428.8, score=24.0]; Tetratricopeptide repeat [PF14559.8, score=22.1]; Tetratricopeptide repeat [PF13174.8, score=19.8]; Tetratricopeptide repeat [PF13431.8, score=19.0]} {Human: ENSG00000166471, TMEM41B, transmembrane protein 41B, [Score=248, Expect=1e-74]} {Mouse: ENSMUSG00000047554, Tmem41b, transmembrane protein 41B, [Score=256, Expect=9e-78]} {Dmel: FBgn0030850, stas, Stasimon, [Score=210, Expect=7e-61]} {Celegans: WBGene00006520, tag-175, Transmembrane protein 41 homolog, [Score=202, Expect=8e-59]} {Smed: dd_Smed_v6_9137_0_1, dd_Smed_v6_9137_0_1, [RH, Score=150, Expect=4e-39]} {RNA1509_27663} {RNA1310_19235} {RNA815_13394}
5.	MligTC455_48685	235	4.9	Mlig455_029936	Neo: - Age: Down-Up-Down Region-enriched R5: 2.194/0.00270	B4GALT4	1.719	-	-	0.768	-	-	0.951	Mlig455_029936 {REF} {Length: 2172} {TRANSSPLICED} {Pfam: N-terminal region of glycosyl transferase group 7 [PF13733.8, score=107.0]; N-terminal domain of galactosyltransferase [PF02709.16, score=59.1]} {Human: ENSG00000121578, B4GALT4, beta-1,4-galactosyltransferase 4, [Score=161, Expect=5e-46]} {Mouse: ENSMUSG00000022793, B4galt4, UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4, [Score=155, Expect=4e-44]} {Dmel: FBgn0027538, beta4GalNAcTA, [Score=153, Expect=1e-42]} {Celegans: WBGene00000269, bre-4, Beta-1,4-N-acetylgalactosaminyltransferase bre-4, [Score=157, Expect=2e-44]} {Smed: dd_Smed_v6_9651_0_1, dd_Smed_v6_9651_0_1, [Score=160, Expect=3e-45]} {RNA1509_50662} {RNA1310_19457} {RNA815_4062}
6.	MligTC455_32932	26	0.54	Mlig455_031885	Neo: - Age: Up-Down-Up	BEST4	1.689	0.735	-	-	-	-	0.954	Mlig455_031885 {REF} {Length: 2058} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=43.1]} {Human: ENSG00000142959, BEST4, bestrophin 4, [Score=67.0, Expect=5e-12]; ENSG00000039987, BEST2, bestrophin 2, [Score=66.2, Expect=1e-11]; ENSG00000167995, BEST1, bestrophin 1, [Score=64.7, Expect=2e-11]} {Mouse: ENSMUSG00000052819, Best2, bestrophin 2, [Score=68.6, Expect=1e-12]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=90.5, Expect=3e-20]} {Celegans: WBGene00014989, best-23, Bestrophin homolog, [Score=70.9, Expect=9e-14]} {Smed: dd_Smed_v6_50289_0_1, dd_Smed_v6_50289_0_1, [Score=94.0, Expect=2e-23]} {RNA1509_22118} {RNA1310_38526} {RNA815_2846.1}
7.	MligTC455_51195	51	1.06	Mlig455_020957	Neo: - Age: Down-Down-Up	CDK5R1	0.971	-	-	-	0.971	-	-	Mlig455_020957 {REF} {Length: 1912} {Pfam: Cyclin-dependent kinase 5 activator protein [PF03261.17, score=249.3]} {Human: ENSG00000176749, CDK5R1, cyclin dependent kinase 5 regulatory subunit 1, [RH, Score=191, Expect=5e-57]} {Mouse: ENSMUSG00000048895, Cdk5r1, cyclin-dependent kinase 5, regulatory subunit 1 (p35), [RH, Score=191, Expect=4e-57]} {Dmel: FBgn0027491, Cdk5alpha, Cdk5 activator-like protein, [RH, Score=199, Expect=2e-58]} {Celegans: WBGene00011955, cdka-1, Cyclin-dependent kinase 5 activator 1, [RH, Score=176, Expect=5e-51]} {Smed: dd_Smed_v6_13788_0_1, dd_Smed_v6_13788_0_1, [RH, Score=216, Expect=9e-67]} {RNA1509_28436} {RNA1310_14097} {RNA815_13436}
8.	MligTC455_41929	42	0.87	Mlig455_058092	Neo: - Age: Down-Up-Down		0.966	-	-	-	0.966	-	-	Mlig455_058092 {REF} {Length: 1217} {NoTransDecoderORF} {RNA1509_11856} {RNA1310_9867.2} {RNA815_18841.1}
9.	MligTC455_26458	210	4.37	Mlig455_060891	Neo: - Age: - Region-enriched R5: 2.452/0.01785		0.959	-	-	0.959	-	-	-	Mlig455_060891 {REF} {Length: 1616} {TRANSSPLICED} {RNA1509_43649} {RNA1310_19279} {RNA815_22593}
10.	MligTC455_14351	20	0.42	Mlig455_033296	Neo: - Age: -		0.957	-	-	-	0.957	-	-	Mlig455_033296 {REF} {Length: 904} {NoTransDecoderORF} {RNA1310_77166} {RNA815_51589}
11.	MligTC455_15447	314	6.55	Mlig455_052865	Neo: Irradiation Age: Up-Up-Down Region-enriched R5: 2.216/0.00200	ESRRG	0.957	-	0.957	-	-	-	-	Mlig455_052865 {REF} {Length: 3062} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=79.8]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=62.1]} {Human: ENSG00000196482, ESRRG, estrogen related receptor gamma, [Score=125, Expect=1e-31]; ENSG00000173153, ESRRA, estrogen related receptor alpha, [Score=120, Expect=6e-30]; ENSG00000119715, ESRRB, estrogen related receptor beta, [Score=120, Expect=4e-30]} {Mouse: ENSMUSG00000026610, Esrrg, estrogen-related receptor gamma, [Score=122, Expect=9e-31]; ENSMUSG00000024955, Esrra, estrogen related receptor, alpha, [Score=121, Expect=2e-30]; ENSMUSG00000021255, Esrrb, estrogen related receptor, beta, [Score=119, Expect=2e-29]} {Dmel: FBgn0035849, ERR, estrogen-related receptor, [Score=100, Expect=3e-23]} {Celegans: WBGene00003609, nhr-10, Nuclear hormone receptor family member nhr-10, [Score=90.5, Expect=5e-20]} {Smed: dd_Smed_v6_12210_0_1, dd_Smed_v6_12210_0_1, [Score=96.3, Expect=8e-22]} {RNA1509_22231, RNA1509_39413} {RNA1310_7459.2, RNA1509_22231, RNA1509_39413} {RNA1509_22231, RNA1509_39413, RNA815_5691.1}
12.	MligTC455_39857	27	0.55	Mlig455_037127	Neo: - Age: Down-Down-Down	NECAB1	0.957	-	-	-	0.957	-	-	Mlig455_037127 {REF} {Length: 1710} {Pfam: EF-hand domain [PF13405.8, score=34.9]; EF hand [PF00036.34, score=33.1]; EF-hand domain pair [PF13499.8, score=27.6]; EF-hand domain pair [PF13833.8, score=27.3]; Antibiotic biosynthesis monooxygenase [PF03992.18, score=25.2]; EF hand [PF13202.8, score=23.2]} {Human: ENSG00000123119, NECAB1, N-terminal EF-hand calcium binding protein 1, [Score=186, Expect=7e-55]} {Mouse: ENSMUSG00000040536, Necab1, N-terminal EF-hand calcium binding protein 1, [Score=180, Expect=7e-53]} {RNA1310_5770} {RNA815_27367}
13.	MligTC455_10719	61	1.26	Mlig455_041088	Neo: - Age: -		0.952	-	-	-	0.952	-	-	Mlig455_041088 {REF} {Length: 338} {NoTransDecoderORF} {RNA1310_18998}
14.	MligTC455_12702	59	1.24	Mlig455_025335	Neo: - Age: Up-Down-Down Region-enriched R4: 4.426/0.03007		0.951	-	-	-	0.951	-	-	Mlig455_025335 {REF} {Length: 1149} {RNA1509_35427} {RNA1310_33690} {RNA815_24467}
15.	MligTC455_21882	719	14.99	Mlig455_059822	Neo: - Age: -		0.951	-	0.951	-	-	-	-	Mlig455_059822 {REF} {Length: 3954} {TRANSSPLICED} {RNA1509_24654, RNA1509_40158, RNA1509_59890} {RNA1310_19639, RNA1509_40158, RNA1509_59890} {RNA1509_40158, RNA1509_59890, RNA815_21316}
16.	MligTC455_33854	41	0.85	Mlig455_031601	Neo: - Age: - Region-enriched R2: 5.730/0.00808		0.951	-	-	-	0.951	-	-	Mlig455_031601 {REF} {Length: 1072} {RNA1310_42312} {RNA815_56269}
17.	MligTC455_12255	87	1.82	Mlig455_042299	Neo: - Age: Down-Up-Down Region-enriched R8: 4.103/0.00190 Region-enriched R7: 3.191/0.00610		0.95	-	-	-	0.950	-	-	Mlig455_042299 {REF} {Length: 2190} {Smed: dd_Smed_v6_18803_0_1, dd_Smed_v6_18803_0_1, [Score=244, Expect=3e-75]} {RNA1310_26226} {RNA815_49309}

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