TomoSeq data search

Data search

Results for MligTC455_18992

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_18992	131	2.72	Mlig455_009818, Mlig455_010367	Neo: - Age: -	GRIK2	Mlig455_009818 {REF} {Length: 2888} {Pfam: Ligand-gated ion channel [PF00060.28, score=89.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=50.1]; Receptor family ligand binding region [PF01094.30, score=19.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=18.3]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=123, Expect=3e-28]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=117, Expect=3e-26]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=117, Expect=3e-26]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=121, Expect=1e-27]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=118, Expect=6e-27]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=118, Expect=6e-27]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=116, Expect=4e-26]} {Dmel: FBgn0038837, CG3822, [Score=129, Expect=1e-30]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=124, Expect=9e-29]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=254, Expect=6e-77]} {RNA1509_14542} {RNA1310_17502} {RNA815_20252} Mlig455_010367 {REF} {Length: 2994} {Pfam: Ligand-gated ion channel [PF00060.28, score=89.5]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=49.8]; Receptor family ligand binding region [PF01094.30, score=30.6]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=120, Expect=3e-27]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=117, Expect=2e-26]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=117, Expect=4e-26]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=114, Expect=2e-25]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=119, Expect=5e-27]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=118, Expect=1e-26]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=118, Expect=1e-26]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=117, Expect=3e-26]} {Dmel: FBgn0038837, CG3822, [Score=130, Expect=2e-30]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=124, Expect=1e-28]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=254, Expect=2e-76]} {RNA1509_26605} {RNA1310_17502} {RNA815_20252}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_18992

131

2.72

Mlig455_009818, Mlig455_010367

Neo: -

Age: -

GRIK2

Mlig455_009818 {REF} {Length: 2888} {Pfam: Ligand-gated ion channel [PF00060.28, score=89.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=50.1]; Receptor family ligand binding region [PF01094.30, score=19.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=18.3]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=123, Expect=3e-28]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=117, Expect=3e-26]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=117, Expect=3e-26]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=121, Expect=1e-27]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=118, Expect=6e-27]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=118, Expect=6e-27]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=116, Expect=4e-26]} {Dmel: FBgn0038837, CG3822, [Score=129, Expect=1e-30]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=124, Expect=9e-29]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=254, Expect=6e-77]} {RNA1509_14542} {RNA1310_17502} {RNA815_20252}

Mlig455_010367 {REF} {Length: 2994} {Pfam: Ligand-gated ion channel [PF00060.28, score=89.5]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=49.8]; Receptor family ligand binding region [PF01094.30, score=30.6]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=120, Expect=3e-27]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=117, Expect=2e-26]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=117, Expect=4e-26]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=114, Expect=2e-25]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=119, Expect=5e-27]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=118, Expect=1e-26]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=118, Expect=1e-26]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=117, Expect=3e-26]} {Dmel: FBgn0038837, CG3822, [Score=130, Expect=2e-30]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=124, Expect=1e-28]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=254, Expect=2e-76]} {RNA1509_26605} {RNA1310_17502} {RNA815_20252}

Cumulative graph for MligTC455_18992

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-3.016	2.175	0.99980	1.00000
RegionR2	1.767	2.175	0.15911	0.49945
RegionR3	-0.293	2.175	0.83441	1.00000
RegionR4	-0.126	2.175	0.79141	1.00000
RegionR5	0.44	2.175	0.59913	0.95687
RegionR6	1.205	2.175	0.28417	0.87440
RegionR7	3.277	2.175	0.00278	0.07316
RegionR8	-3.255	2.175	0.99954	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-1.521	2.175	0.99992	1.00000
RegenerationR2	0.346	2.175	0.57133	0.90272
RegenerationR3	1.264	2.175	0.15597	0.58678
RegenerationR4	0.841	2.175	0.30483	0.74652
RegenerationR5	-0.326	2.175	0.64509	0.92976
RegenerationR6	-0.544	2.175	0.47800	0.79052
RegenerationBL	1.8	2.175	0.20509	0.54614
RegenerationTP	1.082	2.175	0.57156	0.94545

Genes with expression patterns similar to MligTC455_18992

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_18992	131	2.72	Mlig455_009818, Mlig455_010367	Neo: - Age: -	GRIK2	5	-	1.000	1.000	1.000	1.000	1.000	Mlig455_009818 {REF} {Length: 2888} {Pfam: Ligand-gated ion channel [PF00060.28, score=89.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=50.1]; Receptor family ligand binding region [PF01094.30, score=19.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=18.3]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=123, Expect=3e-28]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=117, Expect=3e-26]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=117, Expect=3e-26]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=121, Expect=1e-27]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=118, Expect=6e-27]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=118, Expect=6e-27]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=116, Expect=4e-26]} {Dmel: FBgn0038837, CG3822, [Score=129, Expect=1e-30]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=124, Expect=9e-29]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=254, Expect=6e-77]} {RNA1509_14542} {RNA1310_17502} {RNA815_20252} Mlig455_010367 {REF} {Length: 2994} {Pfam: Ligand-gated ion channel [PF00060.28, score=89.5]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=49.8]; Receptor family ligand binding region [PF01094.30, score=30.6]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=120, Expect=3e-27]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=117, Expect=2e-26]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=117, Expect=4e-26]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=114, Expect=2e-25]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=119, Expect=5e-27]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=118, Expect=1e-26]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=118, Expect=1e-26]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=117, Expect=3e-26]} {Dmel: FBgn0038837, CG3822, [Score=130, Expect=2e-30]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=124, Expect=1e-28]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=254, Expect=2e-76]} {RNA1509_26605} {RNA1310_17502} {RNA815_20252}
2.	MligTC455_27155	202	4.2	Mlig455_000097	Neo: Int S/G2/M Age: logFC(26M/2M)=0.315	C5orf22	0.952	-	-	0.952	-	-	-	Mlig455_000097 {REF} {Length: 2652} {TRANSSPLICED} {Pfam: UPF0489 domain [PF12640.9, score=54.3]} {Human: ENSG00000082213, C5orf22, chromosome 5 open reading frame 22, [Score=49.3, Expect=1e-05]} {Mouse: ENSMUSG00000022195, 6030458C11Rik, RIKEN cDNA 6030458C11 gene, [Score=50.8, Expect=2e-06]} {RNA1509_35711} {RNA1310_7857, RNA1509_35711} {RNA1509_35711, RNA815_3337.1}
3.	MligTC455_46161	97	2.03	Mlig455_007908	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_007908 {REF} {Length: 1544} {RNA1509_43120} {RNA1310_22234} {RNA815_35898}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts