M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19018

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19018 930 19.37 Mlig455_048895

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.318

Region-enriched R4: 1.503/0.01937

 SPATA5 Mlig455_048895 {REF} {Length: 2542} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=194.2]; AAA ATPase domain [PF13191.8, score=40.9]; AAA+ lid domain [PF17862.3, score=36.4]; AAA domain (dynein-related subfamily) [PF07728.16, score=33.3]; AAA domain [PF13671.8, score=27.6]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=24.1]; Protein of unknown function (DUF815) [PF05673.15, score=23.4]; TIP49 P-loop domain [PF06068.15, score=22.5]; AAA domain [PF13173.8, score=20.5]; RNA helicase [PF00910.24, score=20.0]} {Human: ENSG00000145375, SPATA5, spermatogenesis associated 5, [Score=273, Expect=9e-79]} {Mouse: ENSMUSG00000027722, Spata5, spermatogenesis associated 5, [Score=280, Expect=3e-81]} {Dmel: FBgn0261014, TER94, [Score=263, Expect=3e-76]} {Celegans: WBGene00008053, cdc-48.2, Transitional endoplasmic reticulum ATPase homolog 2, [Score=251, Expect=6e-72]} {Smed: dd_Smed_v6_482_0_1, dd_Smed_v6_482_0_1, [Score=238, Expect=5e-67]} {RNA1509_10485} {RNA1310_8530.1} {RNA815_905}

Cumulative graph for MligTC455_19018

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.598 4.678 0.11530 0.70245
RegionR2 -0.675 4.678 0.19826 0.55752
RegionR3 0.082 4.678 0.83984 1.00000
RegionR4 1.503 4.678 0.00222 0.01937
RegionR5 0.81 4.678 0.02260 0.10583
RegionR6 -0.585 4.678 0.17571 0.73680
RegionR7 -1.027 4.678 0.09827 0.60018
RegionR8 -1.706 4.678 0.06659 0.49750

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -9.087 4.678 0.00530 0.36142
RegenerationR2 -0.014 4.678 0.97411 1.00000
RegenerationR3 -0.187 4.678 0.67933 0.94012
RegenerationR4 -0.599 4.678 0.21078 0.65844
RegenerationR5 -0.146 4.678 0.72394 0.96070
RegenerationR6 0.997 4.678 0.03263 0.22578
RegenerationBL 1.222 4.678 0.04147 0.23161
RegenerationTP 0.97 4.678 0.17386 0.60702


Genes with expression patterns similar to MligTC455_19018

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19018 930 19.37 Mlig455_048895

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.318

Region-enriched R4: 1.503/0.01937

 SPATA5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_048895 {REF} {Length: 2542} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=194.2]; AAA ATPase domain [PF13191.8, score=40.9]; AAA+ lid domain [PF17862.3, score=36.4]; AAA domain (dynein-related subfamily) [PF07728.16, score=33.3]; AAA domain [PF13671.8, score=27.6]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=24.1]; Protein of unknown function (DUF815) [PF05673.15, score=23.4]; TIP49 P-loop domain [PF06068.15, score=22.5]; AAA domain [PF13173.8, score=20.5]; RNA helicase [PF00910.24, score=20.0]} {Human: ENSG00000145375, SPATA5, spermatogenesis associated 5, [Score=273, Expect=9e-79]} {Mouse: ENSMUSG00000027722, Spata5, spermatogenesis associated 5, [Score=280, Expect=3e-81]} {Dmel: FBgn0261014, TER94, [Score=263, Expect=3e-76]} {Celegans: WBGene00008053, cdc-48.2, Transitional endoplasmic reticulum ATPase homolog 2, [Score=251, Expect=6e-72]} {Smed: dd_Smed_v6_482_0_1, dd_Smed_v6_482_0_1, [Score=238, Expect=5e-67]} {RNA1509_10485} {RNA1310_8530.1} {RNA815_905}
2. MligTC455_47135 1986 41.37 Mlig455_011848, Mlig455_013126

Neo: Neoblast

Age: Down-Up-Up

Region-enriched R5: 1.668/0.00000
Region-enriched R4: 1.114/0.03442

Regeneration-enriched TP: 2.660
Regeneration-enriched BL: 2.484
Regeneration-enriched R6: 1.347

 3.32 - 0.745 - 0.953 0.750 0.872

Mlig455_011848 {REF} {Length: 1854} {TRANSSPLICED} {Pfam: Mitochondrial 28S ribosomal protein S27 [PF10037.11, score=146.0]} {Smed: dd_Smed_v6_6708_0_1, dd_Smed_v6_6708_0_1, [RH, Score=95.5, Expect=6e-21]} {RNA1509_27945} {RNA1310_15577.1} {RNA815_7061}

Mlig455_013126 {REF} {Length: 1857} {TRANSSPLICED} {Pfam: Mitochondrial 28S ribosomal protein S27 [PF10037.11, score=146.0]} {Smed: dd_Smed_v6_6708_0_1, dd_Smed_v6_6708_0_1, [RH, Score=95.5, Expect=6e-21]} {RNA1509_27945, RNA1509_28320} {RNA1310_15577.1, RNA1509_27945, RNA1509_28320} {RNA1509_27945, RNA1509_28320, RNA815_7061}
3. MligTC455_22329 541 11.26 Mlig455_055850

Neo: -

Age: -

 PTGES2 2.671 - 0.818 - 0.950 - 0.903 Mlig455_055850 {REF} {Length: 2149} {TRANSSPLICED} {Pfam: Glutathione S-transferase, N-terminal domain [PF13417.8, score=42.6]; Glutaredoxin [PF00462.26, score=41.3]; Glutathione S-transferase, N-terminal domain [PF13409.8, score=31.6]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=23.1]} {Human: ENSG00000148334, PTGES2, prostaglandin E synthase 2, [RH, Score=218, Expect=2e-67]} {Mouse: ENSMUSG00000026820, Ptges2, prostaglandin E synthase 2, [RH, Score=215, Expect=9e-67]} {Dmel: FBgn0004465, Su(P), Suppressor of ref(2)P sterility, [RH, Score=208, Expect=1e-63]} {Celegans: WBGene00011239, pges-2, ProstaGlandin E Synthase homolog, [RH, Score=236, Expect=2e-75]} {Smed: dd_Smed_v6_6741_0_1, dd_Smed_v6_6741_0_1, [RH, Score=250, Expect=2e-81]} {RNA1509_24174, RNA1509_38281, RNA1509_41821, RNA1509_45225, RNA1509_50567, RNA1509_51180} {RNA1310_10898, RNA1509_24174, RNA1509_38281, RNA1509_41821, RNA1509_45225, RNA1509_50567, RNA1509_51180} {RNA1509_24174, RNA1509_38281, RNA1509_41821, RNA1509_45225, RNA1509_50567, RNA1509_51180, RNA815_10948}
4. MligTC455_11264 2630 54.79 Mlig455_007585

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.309

 EIF2A 2.627 - - - 0.870 0.951 0.806 Mlig455_007585 {REF} {Length: 1687} {Pfam: Eukaryotic translation initiation factor eIF2A [PF08662.13, score=92.3]} {Human: ENSG00000144895, EIF2A, eukaryotic translation initiation factor 2A, [Score=186, Expect=4e-52]} {Mouse: ENSMUSG00000027810, Eif2a, eukaryotic translation initiation factor 2A, [Score=186, Expect=6e-52]} {Dmel: FBgn0037135, CG7414, [Score=146, Expect=1e-37]} {Celegans: WBGene00008480, eif-2A, Eukaryotic translation initiation factor 2A, [Score=128, Expect=1e-31]} {Smed: dd_Smed_v6_3705_0_1, dd_Smed_v6_3705_0_1, [Score=79.3, Expect=9e-16]} {RNA1509_12274} {RNA1310_9127.2} {RNA815_2839.1}
5. MligTC455_46843 909 18.94 Mlig455_045276

Neo: -

Age: -

 NAGA 2.626 - - - 0.842 0.951 0.833 Mlig455_045276 {REF} {Length: 1834} {TRANSSPLICED} {Pfam: Alpha galactosidase A [PF16499.7, score=416.2]; Alpha galactosidase A C-terminal beta sandwich domain [PF17450.4, score=31.3]; Melibiase [PF02065.20, score=25.4]} {Human: ENSG00000198951, NAGA, alpha-N-acetylgalactosaminidase, [RH, Score=351, Expect=9e-118]; ENSG00000102393, GLA, galactosidase alpha, [RH, Score=336, Expect=1e-111]} {Mouse: ENSMUSG00000022453, Naga, N-acetyl galactosaminidase, alpha, [RH, Score=347, Expect=2e-116]} {Dmel: FBgn0034117, CG7997, [RH, Score=363, Expect=1e-122]} {Celegans: WBGene00011095, gana-1, GAlactosidase/N-Acetylgalactosaminidase, [RH, Score=313, Expect=8e-103]} {Smed: dd_Smed_v6_606_0_2, dd_Smed_v6_606_0_2, [RH, Score=377, Expect=4e-128]} {RNA1509_10858, RNA1509_4952} {RNA1310_15758.1, RNA1509_10858, RNA1509_4952} {RNA1509_10858, RNA1509_4952, RNA815_6215.1}
6. MligTC455_44695 1109 23.11 Mlig455_050298

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.290

Region-enriched R5: 1.019/0.01420

 COQ2 2.594 - - - 0.847 0.959 0.788 Mlig455_050298 {REF} {Length: 1473} {TRANSSPLICED} {Pfam: UbiA prenyltransferase family [PF01040.20, score=172.3]} {Human: ENSG00000173085, COQ2, coenzyme Q2, polyprenyltransferase, [RH, Score=325, Expect=3e-108]} {Mouse: ENSMUSG00000029319, Coq2, coenzyme Q2 4-hydroxybenzoate polyprenyltransferase, [RH, Score=317, Expect=1e-105]} {Dmel: FBgn0037574, Coq2, Coenzyme Q biosynthesis protein 2, [RH, Score=322, Expect=1e-107]} {Celegans: WBGene00000762, coq-2, 4-hydroxybenzoate polyprenyltransferase, mitochondrial, [RH, Score=293, Expect=1e-96]} {Smed: dd_Smed_v6_7492_0_2, dd_Smed_v6_7492_0_2, [RH, Score=345, Expect=9e-118]} {RNA1509_29720, RNA1509_48386, RNA1509_58808} {RNA1310_22083.2, RNA1509_29720, RNA1509_48386, RNA1509_58808} {RNA1509_29720, RNA1509_48386, RNA1509_58808, RNA815_9267.1}
7. MligTC455_29087 7641 159.19 Mlig455_036816, Mlig455_053019, Mlig455_053286, Mlig455_053424

Neo: Neoblast

Age: -

Region-enriched R4: 1.129/0.00034

Regeneration-enriched R6: 1.370
Regeneration-enriched BL: 1.218

 NOP56 2.568 - 0.834 - 0.952 0.782 -

Mlig455_036816 {REF} {Length: 871} {Pfam: Hsp20/alpha crystallin family [PF00011.23, score=36.8]} {Smed: dd_Smed_v6_1039_0_1, dd_Smed_v6_1039_0_1, [Score=49.7, Expect=3e-08]} {RNA1310_50408} {RNA815_48338}

Mlig455_053019 {REF} {Length: 1101} {Pfam: Hsp20/alpha crystallin family [PF00011.23, score=49.1]} {Smed: dd_Smed_v6_1039_0_1, dd_Smed_v6_1039_0_1, [Score=65.5, Expect=5e-13]} {RNA1310_50408} {RNA815_48338}

Mlig455_053286 {REF} {Length: 1972} {TRANSSPLICED} {Pfam: snoRNA binding domain, fibrillarin [PF01798.20, score=255.2]; NOP5NT (NUC127) domain [PF08156.15, score=60.8]} {Human: ENSG00000101361, NOP56, NOP56 ribonucleoprotein, [RH, Score=564, Expect=0.0]} {Mouse: ENSMUSG00000027405, Nop56, NOP56 ribonucleoprotein, [RH, Score=540, Expect=0.0]} {Dmel: FBgn0038964, Nop56, [RH, Score=506, Expect=4e-176]} {Celegans: WBGene00010627, K07C5.4, Uncharacterized NOP5 family protein K07C5.4, [RH, Score=465, Expect=4e-160]} {Smed: dd_Smed_v6_4994_0_1, dd_Smed_v6_4994_0_1, [RH, Score=386, Expect=1e-127]} {RNA1509_2513} {RNA1310_14046.1} {RNA815_5162.1}

Mlig455_053424 {REF} {Length: 1972} {TRANSSPLICED} {Pfam: snoRNA binding domain, fibrillarin [PF01798.20, score=255.2]; NOP5NT (NUC127) domain [PF08156.15, score=60.8]} {Human: ENSG00000101361, NOP56, NOP56 ribonucleoprotein, [RH, Score=564, Expect=0.0]} {Mouse: ENSMUSG00000027405, Nop56, NOP56 ribonucleoprotein, [RH, Score=540, Expect=0.0]} {Dmel: FBgn0038964, Nop56, [RH, Score=506, Expect=4e-176]} {Celegans: WBGene00010627, K07C5.4, Uncharacterized NOP5 family protein K07C5.4, [RH, Score=465, Expect=4e-160]} {Smed: dd_Smed_v6_4994_0_1, dd_Smed_v6_4994_0_1, [RH, Score=386, Expect=1e-127]} {RNA1509_11790, RNA1509_23586, RNA1509_2513} {RNA1310_14046.1, RNA1509_11790, RNA1509_23586, RNA1509_2513} {RNA1509_11790, RNA1509_23586, RNA1509_2513, RNA815_5162.1}
8. MligTC455_46411 1598 33.3 Mlig455_031090, Mlig455_031125

Neo: Int S/G2/M

Age: -

 RFC1 2.527 - - - 0.791 0.961 0.775

Mlig455_031090 {REF} {Length: 3760} {TRANSSPLICED} {Pfam: Replication factor RFC1 C terminal domain [PF08519.14, score=147.7]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=47.3]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=34.2]; twin BRCT domain [PF12738.9, score=20.1]} {Human: ENSG00000035928, RFC1, replication factor C subunit 1, [Score=545, Expect=2e-174]} {Mouse: ENSMUSG00000029191, Rfc1, replication factor C (activator 1) 1, [Score=551, Expect=9e-177]} {Dmel: FBgn0004913, Gnf1, Germ line transcription factor 1, [Score=518, Expect=4e-166]} {Celegans: WBGene00004337, rfc-1, RFC (DNA replication factor) family, [RH, Score=440, Expect=2e-138]} {Smed: dd_Smed_v6_11546_0_1, dd_Smed_v6_11546_0_1, [Score=395, Expect=8e-121]} {RNA1509_32943} {RNA1310_3700} {RNA815_3470}

Mlig455_031125 {REF} {Length: 3479} {TRANSSPLICED} {Pfam: Replication factor RFC1 C terminal domain [PF08519.14, score=148.5]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=47.5]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=34.4]; twin BRCT domain [PF12738.9, score=20.3]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=18.4]} {Human: ENSG00000035928, RFC1, replication factor C subunit 1, [RH, Score=607, Expect=0.0]} {Mouse: ENSMUSG00000029191, Rfc1, replication factor C (activator 1) 1, [RH, Score=620, Expect=0.0]} {Dmel: FBgn0004913, Gnf1, Germ line transcription factor 1, [Score=558, Expect=0.0]} {Celegans: WBGene00004337, rfc-1, RFC (DNA replication factor) family, [RH, Score=437, Expect=4e-138]} {Smed: dd_Smed_v6_11546_0_1, dd_Smed_v6_11546_0_1, [RH, Score=454, Expect=1e-143]} {RNA1509_22129} {RNA1310_3700} {RNA815_3470}
9. MligTC455_34814 1342 27.96 Mlig455_060345

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.018/0.00720

 WDR12 2.502 - - - 0.783 0.965 0.754 Mlig455_060345 {REF} {Length: 1392} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=97.5]; NLE (NUC135) domain [PF08154.14, score=47.1]} {Human: ENSG00000138442, WDR12, WD repeat domain 12, [RH, Score=164, Expect=1e-45]} {Mouse: ENSMUSG00000026019, Wdr12, WD repeat domain 12, [RH, Score=171, Expect=1e-48]} {Dmel: FBgn0032298, CG6724, [RH, Score=179, Expect=1e-51]} {Celegans: WBGene00018893, wdr-12, Ribosome biogenesis protein WDR12 homolog, [RH, Score=137, Expect=5e-36]} {Smed: dd_Smed_v6_8737_0_1, dd_Smed_v6_8737_0_1, [RH, Score=97.8, Expect=3e-22]} {RNA1509_12483} {RNA1310_20718} {RNA815_8336}
10. MligTC455_23168 1390 28.95 Mlig455_010328, Mlig455_065663

Neo: Neoblast, stringent

Age: -

Region-enriched R5: 1.082/0.00159

 OGG1 2.49 - - 0.717 0.819 0.954 -

Mlig455_010328 {REF} {Length: 226} {NoTransDecoderORF} {RNA1509_8363} {RNA1310_3839} {RNA815_1115}

Mlig455_065663 {REF} {Length: 4418} {Pfam: Microtubule-associated protein Bicaudal-D [PF09730.11, score=354.3]; 8-oxoguanine DNA glycosylase, N-terminal domain [PF07934.14, score=77.4]; HhH-GPD superfamily base excision DNA repair protein [PF00730.27, score=53.4]} {Human: ENSG00000114026, OGG1, 8-oxoguanine DNA glycosylase, [RH, Score=253, Expect=8e-75]} {Mouse: ENSMUSG00000030271, Ogg1, 8-oxoguanine DNA-glycosylase 1, [RH, Score=249, Expect=2e-73]} {Dmel: FBgn0000183, BicD, Bicaudal D, [RH, Score=211, Expect=2e-56]} {Celegans: WBGene00016611, bicd-1, BICaudal D (Drosophila) homolog, [RH, Score=145, Expect=2e-35]} {Smed: dd_Smed_v6_758_0_1, dd_Smed_v6_758_0_1, [RH, Score=328, Expect=2e-95]} {RNA1509_12040, RNA1509_8363} {RNA1310_3839, RNA1509_12040} {RNA1509_12040, RNA815_7397}
11. MligTC455_47781 1192 24.84 Mlig455_006493, Mlig455_006614

Neo: -

Age: -

 1.846 - - - - 0.951 0.895

Mlig455_006493 {REF} {Length: 1635} {RNA1509_13310} {RNA1310_19450, RNA1509_13310} {RNA1509_13310, RNA815_7765}

Mlig455_006614 {REF} {Length: 1632} {TRANSSPLICED} {RNA1509_13310} {RNA1310_19450} {RNA815_7765}
12. MligTC455_40214 1408 29.34 Mlig455_000188

Neo: Int S/G2/M

Age: Down-Up-Up

Region-specific R5: 2.031

Region-enriched R5: 1.554/0.00000

 1.825 - - - 0.952 0.873 - Mlig455_000188 {REF} {Length: 1568} {TRANSSPLICED} {Pfam: A49-like RNA polymerase I associated factor [PF06870.14, score=103.8]} {RNA1509_19206, RNA1509_32767} {RNA1310_18855.1, RNA1509_19206, RNA1509_32767} {RNA1509_19206, RNA1509_32767, RNA815_26021.1}
13. MligTC455_44061 1563 32.56 Mlig455_020150

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.326

 RBM15B 1.809 - - - 0.857 0.952 - Mlig455_020150 {REF} {Length: 2624} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=69.0]; SPOC domain [PF07744.15, score=50.6]; RNA recognition motif [PF16367.7, score=25.8]} {Human: ENSG00000259956, RBM15B, RNA binding motif protein 15B, [RH, Score=146, Expect=1e-35]; ENSG00000162775, RBM15, RNA binding motif protein 15, [RH, Score=142, Expect=3e-34]} {Mouse: ENSMUSG00000074102, Rbm15b, RNA binding motif protein 15B, [RH, Score=147, Expect=6e-36]; ENSMUSG00000048109, Rbm15, RNA binding motif protein 15, [RH, Score=142, Expect=2e-34]} {Dmel: FBgn0027548, nito, spenito, [RH, Score=151, Expect=2e-37]} {Celegans: WBGene00017929, grld-1, Glutamate Receptor Level Decreased, [RH, Score=142, Expect=3e-36]} {Smed: dd_Smed_v6_7282_0_1, dd_Smed_v6_7282_0_1, [RH, Score=223, Expect=2e-63]} {RNA1509_27794, RNA1509_34223, RNA1509_60106, RNA1509_6733} {RNA1310_8176.1, RNA1509_27794, RNA1509_34223, RNA1509_60106, RNA1509_6733} {RNA1509_27794, RNA1509_34223, RNA1509_60106, RNA1509_6733, RNA815_25048}
14. MligTC455_18958 792 16.49 Mlig455_042406

Neo: -

Age: -

Region-enriched R4: 1.734/0.00167

 GEMIN2 1.735 - - - 0.950 - 0.785 Mlig455_042406 {REF} {Length: 3385} {Pfam: Survival motor neuron (SMN) interacting protein 1 (SIP1) [PF04938.14, score=147.2]} {Human: ENSG00000092208, GEMIN2, gem nuclear organelle associated protein 2, [RH, Score=89.4, Expect=1e-19]} {Mouse: ENSMUSG00000060121, Gemin2, gem nuclear organelle associated protein 2, [Score=104, Expect=4e-25]} {Celegans: WBGene00004886, smi-1, SMN (Survival of motor neuron) protein Interactor, [Score=60.5, Expect=3e-10]} {Smed: dd_Smed_v6_11175_0_4, dd_Smed_v6_11175_0_4, [Score=53.1, Expect=7e-08]} {RNA1509_43080} {RNA1310_28644, RNA1509_43080} {RNA1509_43080, RNA815_45784}
15. MligTC455_44383 317 6.61 Mlig455_034960

Neo: -

Age: -

Region-enriched R4: 2.674/0.00612

 EIF2D 1.727 - - - 0.777 0.950 - Mlig455_034960 {REF} {Length: 1862} {TRANSSPLICED} {Pfam: Translation initiation factor SUI1 [PF01253.24, score=50.1]; Pre-PUA-like domain [PF17832.3, score=47.7]; PUA domain [PF01472.22, score=22.0]} {Human: ENSG00000143486, EIF2D, eukaryotic translation initiation factor 2D, [RH, Score=224, Expect=4e-65]} {Mouse: ENSMUSG00000026427, Eif2d, eukaryotic translation initiation factor 2D, [RH, Score=232, Expect=2e-68]} {Dmel: FBgn0041588, eIF2D, eukaryotic translation initiation factor 2D, [RH, Score=157, Expect=3e-41]} {Celegans: WBGene00016113, eif-2D, Eukaryotic Initiation Factor, [RH, Score=166, Expect=1e-44]} {Smed: dd_Smed_v6_8416_0_1, dd_Smed_v6_8416_0_1, [RH, Score=208, Expect=5e-60]} {RNA1509_11904} {RNA1310_15383.1} {RNA815_5804}
16. MligTC455_18895 183 3.81 Mlig455_021225

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.383

 DDX52 1.706 - - - - 0.953 0.753 Mlig455_021225 {REF} {Length: 1744} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=116.4]; Helicase conserved C-terminal domain [PF00271.33, score=87.0]} {Human: ENSG00000278053, DDX52, DExD-box helicase 52, [RH, Score=288, Expect=1e-89]; ENSG00000277594, DDX52, DExD-box helicase 52, [RH, Score=287, Expect=2e-89]} {Mouse: ENSMUSG00000020677, Ddx52, DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, [RH, Score=288, Expect=8e-90]} {Dmel: FBgn0036754, CG5589, [RH, Score=277, Expect=9e-86]} {Celegans: WBGene00011032, R05D11.4, [RH, Score=254, Expect=4e-77]} {Smed: dd_Smed_v6_7870_0_1, dd_Smed_v6_7870_0_1, [RH, Score=251, Expect=2e-77]} {RNA1509_7314} {RNA1310_15587} {RNA815_6774}
17. MligTC455_50470 488 10.16 Mlig455_020809

Neo: Int S/G2/M

Age: -

 POLR2C 1.703 - 0.753 - 0.950 - - Mlig455_020809 {REF} {Length: 2338} {TRANSSPLICED} {Pfam: RNA polymerase Rpb3/RpoA insert domain [PF01000.28, score=121.0]; RNA polymerase Rpb3/Rpb11 dimerisation domain [PF01193.26, score=67.5]} {Human: ENSG00000102978, POLR2C, RNA polymerase II subunit C, [RH, Score=374, Expect=5e-131]} {Mouse: ENSMUSG00000031783, Polr2c, polymerase (RNA) II (DNA directed) polypeptide C, [RH, Score=376, Expect=4e-132]} {Dmel: FBgn0026373, RpII33, RNA polymerase II 33kD subunit, [RH, Score=355, Expect=5e-124]} {Celegans: WBGene00007971, rpb-3, RNA Polymerase II (B) subunit, [RH, Score=315, Expect=3e-108]} {Smed: dd_Smed_v6_4346_0_1, dd_Smed_v6_4346_0_1, [RH, Score=318, Expect=1e-109]} {RNA1509_11618, RNA1509_23767} {RNA1310_31465, RNA1509_11618, RNA1509_23767} {RNA1509_11618, RNA1509_23767, RNA815_15387}
18. MligTC455_51156 651 13.56 Mlig455_025107

Neo: -

Age: -

Regeneration-upregulated R6: 1.828

Regeneration-enriched R6: 1.828

 CPT2 1.701 - - - 0.950 0.751 - Mlig455_025107 {REF} {Length: 2540} {TRANSSPLICED} {Pfam: Choline/Carnitine o-acyltransferase [PF00755.22, score=522.5]} {Human: ENSG00000157184, CPT2, carnitine palmitoyltransferase 2, [RH, Score=510, Expect=5e-173]} {Mouse: ENSMUSG00000028607, Cpt2, carnitine palmitoyltransferase 2, [RH, Score=514, Expect=9e-175]} {Dmel: FBgn0035383, CPT2, Carnitine palmitoyltransferase 2, [RH, Score=417, Expect=3e-137]} {Celegans: WBGene00011122, cpt-2, Carnitine Palmitoyl Transferase, [RH, Score=397, Expect=6e-130]} {Smed: dd_Smed_v6_5773_0_1, dd_Smed_v6_5773_0_1, [RH, Score=397, Expect=9e-130]} {RNA1509_23269, RNA1509_4546} {RNA1310_7414, RNA1509_23269, RNA1509_4546} {RNA1509_23269, RNA1509_4546, RNA815_2900}
19. MligTC455_41935 2300 47.92 Mlig455_063542

Neo: Neoblast

Age: -

Regeneration-upregulated R6: 1.465

Regeneration-enriched R6: 1.465

 KHDRBS3 1.67 - 0.719 - 0.951 - - Mlig455_063542 {REF} {Length: 4578} {Pfam: KH domain [PF00013.31, score=28.4]} {Human: ENSG00000131773, KHDRBS3, KH RNA binding domain containing, signal transduction associated 3, [RH, Score=144, Expect=8e-39]; ENSG00000112232, KHDRBS2, KH RNA binding domain containing, signal transduction associated 2, [RH, Score=142, Expect=2e-38]} {Mouse: ENSMUSG00000022332, Khdrbs3, KH domain containing, RNA binding, signal transduction associated 3, [RH, Score=144, Expect=3e-39]; ENSMUSG00000026058, Khdrbs2, KH domain containing, RNA binding, signal transduction associated 2, [RH, Score=142, Expect=1e-38]} {Dmel: FBgn0022987, qkr54B, quaking related 54B, [RH, Score=124, Expect=3e-31]} {Celegans: WBGene00017098, E02D9.1, [RH, Score=91.3, Expect=2e-20]} {Smed: dd_Smed_v6_1578_0_1, dd_Smed_v6_1578_0_1, [RH, Score=178, Expect=5e-53]} {RNA1509_3346, RNA1509_4250} {RNA1310_15663, RNA1509_4250} {RNA1509_4250, RNA815_6309}
20. MligTC455_42770 917 19.11 Mlig455_004760

Neo: -

Age: -

 CSTF1 0.976 - - - - 0.976 - Mlig455_004760 {REF} {Length: 1649} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=106.2]; Cleavage stimulation factor subunit 1, dimerisation domain [PF16699.7, score=78.0]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=61.5]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=21.1]} {Human: ENSG00000101138, CSTF1, cleavage stimulation factor subunit 1, [RH, Score=519, Expect=0.0]} {Mouse: ENSMUSG00000027498, Cstf1, cleavage stimulation factor, 3' pre-RNA, subunit 1, [RH, Score=518, Expect=0.0]} {Dmel: FBgn0039867, CstF50, Cleavage stimulation factor 50 kD subunit, [RH, Score=444, Expect=7e-155]} {Celegans: WBGene00000773, cpf-1, Cleavage and Polyadenylation Factor, [RH, Score=444, Expect=1e-154]} {Smed: dd_Smed_v6_6400_0_1, dd_Smed_v6_6400_0_1, [RH, Score=517, Expect=0.0]} {RNA1509_23203, RNA1509_30239, RNA1509_30962} {RNA1310_8078, RNA1509_23203, RNA1509_30239, RNA1509_30962} {RNA1509_23203, RNA1509_30239, RNA1509_30962, RNA815_2663}
21. MligTC455_52101 627 13.06 Mlig455_002568

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_002568 {REF} {Length: 1100} {Pfam: COMM domain [PF07258.16, score=27.3]} {Smed: dd_Smed_v6_1358_0_1, dd_Smed_v6_1358_0_1, [RH, Score=78.2, Expect=1e-17]} {RNA1509_38721, RNA1509_42859} {RNA1310_14453, RNA1509_38721, RNA1509_42859} {RNA1509_38721, RNA1509_42859, RNA815_15500.1}
22. MligTC455_25385 1186 24.7 Mlig455_058980

Neo: Int S/G2/M

Age: -

 SF3B3 0.97 - - - 0.970 - - Mlig455_058980 {REF} {Length: 4050} {Pfam: Mono-functional DNA-alkylating methyl methanesulfonate N-term [PF10433.11, score=591.2]; CPSF A subunit region [PF03178.17, score=274.4]} {Human: ENSG00000189091, SF3B3, splicing factor 3b subunit 3, [RH, Score=1840, Expect=0.0]} {Mouse: ENSMUSG00000033732, Sf3b3, splicing factor 3b, subunit 3, [RH, Score=1841, Expect=0.0]} {Dmel: FBgn0035162, Sf3b3, Splicing factor 3b subunit 3, [RH, Score=1713, Expect=0.0]} {Celegans: WBGene00019323, teg-4, Tumorous Enhancer of Glp-1(Gf), [RH, Score=1405, Expect=0.0]} {Smed: dd_Smed_v6_4241_0_1, dd_Smed_v6_4241_0_1, [RH, Score=1600, Expect=0.0]} {RNA1509_25911, RNA1509_35270, RNA1509_5382, RNA1509_57056} {RNA1310_2503, RNA1509_25911, RNA1509_35270, RNA1509_5382, RNA1509_57056} {RNA1509_25911, RNA1509_35270, RNA1509_5382, RNA1509_57056, RNA815_4779}
23. MligTC455_17379 307 6.39 Mlig455_038374

Neo: Irradiation

Age: -

Region-enriched R5: 1.705/0.01781

 0.966 - - - 0.966 - - Mlig455_038374 {REF} {Length: 2193} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=36.6]} {RNA1509_22698} {RNA1310_2971.1, RNA1509_22698} {RNA1509_22698, RNA815_24859}
24. MligTC455_53162 5692 118.59 Mlig455_040899, Mlig455_066443, Mlig455_068990

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.319

Regeneration-upregulated BL: 1.179

Regeneration-enriched BL: 1.179

 LSM14A 0.966 - - - 0.966 - -

Mlig455_040899 {REF} {Length: 2794} {TRANSSPLICED} {Pfam: Scd6-like Sm domain [PF12701.9, score=103.3]; FDF domain [PF09532.12, score=57.3]; Ataxin 2 SM domain [PF14438.8, score=24.4]} {Human: ENSG00000257103, LSM14A, LSM14A, mRNA processing body assembly factor, [RH, Score=157, Expect=2e-41]; ENSG00000262860, LSM14A, LSM14A, mRNA processing body assembly factor, [RH, Score=157, Expect=2e-41]; ENSG00000149657, LSM14B, LSM family member 14B, [RH, Score=153, Expect=1e-41]} {Mouse: ENSMUSG00000066568, Lsm14a, LSM14A mRNA processing body assembly factor, [RH, Score=154, Expect=4e-42]; ENSMUSG00000039108, Lsm14b, LSM family member 14B, [RH, Score=150, Expect=9e-40]} {Dmel: FBgn0041775, tral, trailer hitch, [RH, Score=107, Expect=3e-24]} {Celegans: WBGene00012484, car-1, Cytokinesis, Apoptosis, RNA-associated, [RH, Score=132, Expect=8e-34]} {Smed: dd_Smed_v6_1125_0_1, dd_Smed_v6_1125_0_1, [RH, Score=151, Expect=1e-39]} {RNA1509_2661} {RNA1310_6998.1} {RNA815_10458.1}

Mlig455_066443 {REF} {Length: 2711} {TRANSSPLICED} {Pfam: Scd6-like Sm domain [PF12701.9, score=103.4]; FDF domain [PF09532.12, score=58.3]; Ataxin 2 SM domain [PF14438.8, score=24.5]} {Human: ENSG00000257103, LSM14A, LSM14A, mRNA processing body assembly factor, [RH, Score=157, Expect=1e-41]; ENSG00000262860, LSM14A, LSM14A, mRNA processing body assembly factor, [RH, Score=157, Expect=1e-41]; ENSG00000149657, LSM14B, LSM family member 14B, [RH, Score=154, Expect=7e-42]} {Mouse: ENSMUSG00000066568, Lsm14a, LSM14A mRNA processing body assembly factor, [RH, Score=154, Expect=3e-42]; ENSMUSG00000039108, Lsm14b, LSM family member 14B, [RH, Score=150, Expect=5e-40]} {Dmel: FBgn0041775, tral, trailer hitch, [RH, Score=108, Expect=2e-24]} {Celegans: WBGene00012484, car-1, Cytokinesis, Apoptosis, RNA-associated, [RH, Score=132, Expect=6e-34]} {Smed: dd_Smed_v6_1125_0_1, dd_Smed_v6_1125_0_1, [RH, Score=150, Expect=1e-39]} {RNA1509_10410, RNA1509_11435} {RNA1310_6998.1, RNA1509_11435} {RNA1509_11435, RNA815_10458.1}

Mlig455_068990 {REF} {Length: 2782} {TRANSSPLICED} {Pfam: Scd6-like Sm domain [PF12701.9, score=103.3]; FDF domain [PF09532.12, score=58.2]; Ataxin 2 SM domain [PF14438.8, score=24.4]} {Human: ENSG00000257103, LSM14A, LSM14A, mRNA processing body assembly factor, [RH, Score=157, Expect=3e-41]; ENSG00000262860, LSM14A, LSM14A, mRNA processing body assembly factor, [RH, Score=157, Expect=3e-41]; ENSG00000149657, LSM14B, LSM family member 14B, [RH, Score=153, Expect=1e-41]} {Mouse: ENSMUSG00000066568, Lsm14a, LSM14A mRNA processing body assembly factor, [RH, Score=154, Expect=5e-42]; ENSMUSG00000039108, Lsm14b, LSM family member 14B, [RH, Score=150, Expect=1e-39]} {Dmel: FBgn0041775, tral, trailer hitch, [RH, Score=107, Expect=4e-24]} {Celegans: WBGene00012484, car-1, Cytokinesis, Apoptosis, RNA-associated, [RH, Score=131, Expect=2e-33]} {Smed: dd_Smed_v6_1125_0_1, dd_Smed_v6_1125_0_1, [RH, Score=150, Expect=4e-39]} {RNA1509_2661} {RNA1310_6998.1} {RNA815_10458.1}
25. MligTC455_11506 25 0.52 Mlig455_015076

Neo: -

Age: logFC(26M/2M)=1.008

Region-enriched R4: 4.728/0.02947

 0.962 - - - 0.962 - - Mlig455_015076 {REF} {Length: 1260} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59864} {RNA1310_26446.1} {RNA815_3572.1}
26. MligTC455_43803 1403 29.22 Mlig455_024433

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.253

 SF1 0.956 - - - - 0.956 - Mlig455_024433 {REF} {Length: 2175} {TRANSSPLICED} {Pfam: Splicing factor 1 helix-hairpin domain [PF16275.7, score=129.6]; KH domain [PF00013.31, score=36.4]; Zinc knuckle [PF00098.25, score=25.0]} {Human: ENSG00000168066, SF1, splicing factor 1, [RH, Score=369, Expect=4e-120]} {Mouse: ENSMUSG00000024949, Sf1, splicing factor 1, [RH, Score=369, Expect=2e-120]; ENSMUSG00000106722, Sf1, splicing factor 1, [RH, Score=369, Expect=2e-120]} {Dmel: FBgn0025571, SF1, Splicing factor 1, [RH, Score=388, Expect=2e-126]} {Celegans: WBGene00001595, gld-1, Female germline-specific tumor suppressor gld-1, [Score=108, Expect=3e-25]} {Smed: dd_Smed_v6_9172_0_1, dd_Smed_v6_9172_0_1, [RH, Score=282, Expect=9e-91]} {RNA1509_4122} {RNA1310_11033.1, RNA1509_4122} {RNA1509_4122, RNA815_13409}
27. MligTC455_45348 449 9.36 Mlig455_018197

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.344

Region-enriched R4: 1.570/0.01352

 0.952 - - - - - 0.952 Mlig455_018197 {REF} {Length: 557} {TRANSSPLICED} {RNA1509_8488} {RNA1310_53570} {RNA815_35020}
28. MligTC455_42460 502 10.47 Mlig455_056167

Neo: -

Age: -

 GAPVD1 0.951 - - - - 0.951 - Mlig455_056167 {REF} {Length: 4996} {TRANSSPLICED} {Pfam: Vacuolar sorting protein 9 (VPS9) domain [PF02204.20, score=58.8]; GTPase-activator protein for Ras-like GTPase [PF00616.21, score=28.7]} {Human: ENSG00000165219, GAPVD1, GTPase activating protein and VPS9 domains 1, [RH, Score=199, Expect=8e-51]} {Mouse: ENSMUSG00000026867, Gapvd1, GTPase activating protein and VPS9 domains 1, [RH, Score=196, Expect=3e-50]} {Dmel: FBgn0030286, CG1657, [RH, Score=140, Expect=4e-33]} {Celegans: WBGene00004377, rme-6, Receptor-mediated endocytosis protein 6, [RH, Score=119, Expect=7e-27]} {Smed: dd_Smed_v6_6601_0_1, dd_Smed_v6_6601_0_1, [RH, Score=160, Expect=2e-39]} {RNA1509_19599, RNA1509_33439, RNA1509_7178} {RNA1310_1202.1, RNA1509_19599, RNA1509_33439, RNA1509_7178} {RNA1509_19599, RNA1509_33439, RNA1509_7178, RNA815_477.1}
29. MligTC455_52116 1099 22.9 Mlig455_056371

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.213/0.01277

 SDE2 0.951 - - - - 0.951 - Mlig455_056371 {REF} {Length: 1424} {TRANSSPLICED} {Pfam: Silencing defective 2 N-terminal ubiquitin domain [PF13019.8, score=79.6]; Replication stress response SDE2 C-terminal [PF13297.8, score=71.6]; Cornifin (SPRR) family [PF02389.17, score=24.0]} {Human: ENSG00000143751, SDE2, SDE2 telomere maintenance homolog, [RH, Score=124, Expect=5e-31]} {Mouse: ENSMUSG00000038806, Sde2, SDE2 telomere maintenance homolog (S. pombe), [RH, Score=158, Expect=1e-43]} {Dmel: FBgn0043455, CG5986, [RH, Score=84.7, Expect=1e-18]} {Celegans: WBGene00009996, F53F4.14, [RH, Score=79.7, Expect=5e-16]} {Smed: dd_Smed_v6_5448_0_1, dd_Smed_v6_5448_0_1, [RH, Score=155, Expect=5e-44]} {RNA1509_10307, RNA1509_43561, RNA1509_48494} {RNA1310_25308.1, RNA1509_10307, RNA1509_43561, RNA1509_48494} {RNA1509_10307, RNA1509_43561, RNA1509_48494, RNA815_15881}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA