M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19087

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19087 349 7.26 Mlig455_002102

Neo: -

Age: -

 MEGF6 Mlig455_002102 {REF} {Length: 7462} {Pfam: Laminin EGF domain [PF00053.26, score=134.2]; Coagulation Factor Xa inhibitory site [PF14670.8, score=113.5]; Calcium-binding EGF domain [PF07645.17, score=78.8]; Complement Clr-like EGF-like [PF12662.9, score=76.7]; Human growth factor-like EGF [PF12661.9, score=24.2]; EGF domain [PF12947.9, score=19.3]} {Human: ENSG00000162591, MEGF6, multiple EGF like domains 6, [RH, Score=980, Expect=0.0]} {Mouse: ENSMUSG00000057751, Megf6, multiple EGF-like-domains 6, [RH, Score=1011, Expect=0.0]} {Dmel: FBgn0027594, drpr, draper, [RH, Score=434, Expect=1e-130]} {Celegans: WBGene00013416, Y64G10A.7, [Score=1076, Expect=0.0]} {Smed: dd_Smed_v6_5630_0_1, dd_Smed_v6_5630_0_1, [Score=736, Expect=0.0]} {RNA1509_42688} {RNA1310_794} {RNA815_8704}

Cumulative graph for MligTC455_19087

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.061 2.847 0.96811 1.00000
RegionR2 0.6 2.847 0.47659 0.86150
RegionR3 -0.205 2.847 0.76747 1.00000
RegionR4 -0.015 2.847 0.98986 1.00000
RegionR5 -1.008 2.847 0.15392 0.41019
RegionR6 0.804 2.847 0.21341 0.79145
RegionR7 0.245 2.847 0.76443 1.00000
RegionR8 -0.482 2.847 0.63321 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.009 2.847 0.62050 1.00000
RegenerationR2 0.087 2.847 0.90399 1.00000
RegenerationR3 0.742 2.847 0.37193 0.78483
RegenerationR4 0.359 2.847 0.68629 0.94764
RegenerationR5 1.144 2.847 0.15989 0.58336
RegenerationR6 1.077 2.847 0.16781 0.49828
RegenerationBL 0.341 2.847 0.70176 1.00000
RegenerationTP 0.248 2.847 0.79482 1.00000


Genes with expression patterns similar to MligTC455_19087

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19087 349 7.26 Mlig455_002102

Neo: -

Age: -

 MEGF6 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_002102 {REF} {Length: 7462} {Pfam: Laminin EGF domain [PF00053.26, score=134.2]; Coagulation Factor Xa inhibitory site [PF14670.8, score=113.5]; Calcium-binding EGF domain [PF07645.17, score=78.8]; Complement Clr-like EGF-like [PF12662.9, score=76.7]; Human growth factor-like EGF [PF12661.9, score=24.2]; EGF domain [PF12947.9, score=19.3]} {Human: ENSG00000162591, MEGF6, multiple EGF like domains 6, [RH, Score=980, Expect=0.0]} {Mouse: ENSMUSG00000057751, Megf6, multiple EGF-like-domains 6, [RH, Score=1011, Expect=0.0]} {Dmel: FBgn0027594, drpr, draper, [RH, Score=434, Expect=1e-130]} {Celegans: WBGene00013416, Y64G10A.7, [Score=1076, Expect=0.0]} {Smed: dd_Smed_v6_5630_0_1, dd_Smed_v6_5630_0_1, [Score=736, Expect=0.0]} {RNA1509_42688} {RNA1310_794} {RNA815_8704}
2. MligTC455_27947 353 7.35 Mlig455_049351

Neo: -

Age: Up-Down-Down

 BCAT2 0.963 - - - 0.963 - - Mlig455_049351 {REF} {Length: 3773} {Pfam: Amino-transferase class IV [PF01063.21, score=94.8]} {Human: ENSG00000105552, BCAT2, branched chain amino acid transaminase 2, [Score=364, Expect=2e-123]; ENSG00000060982, BCAT1, branched chain amino acid transaminase 1, [Score=362, Expect=2e-122]} {Mouse: ENSMUSG00000030826, Bcat2, branched chain aminotransferase 2, mitochondrial, [Score=379, Expect=3e-129]; ENSMUSG00000030268, Bcat1, branched chain aminotransferase 1, cytosolic, [Score=370, Expect=4e-126]} {Dmel: FBgn0030482, CG1673, [Score=370, Expect=2e-125]} {Celegans: WBGene00001149, bcat-1, Branched-chain-amino-acid aminotransferase, cytosolic, [RH, Score=372, Expect=2e-126]} {Smed: dd_Smed_v6_3721_0_1, dd_Smed_v6_3721_0_1, [RH, Score=410, Expect=7e-142]} {RNA1509_24419, RNA1509_52594} {RNA1310_21362.1, RNA1509_52594} {RNA1509_52594, RNA815_10816}
3. MligTC455_54123 611 12.72 Mlig455_052009

Neo: -

Age: logFC(26M/2M)=-0.288

Region-enriched R6: 2.051/0.00658

 0.961 - - - - - 0.961 Mlig455_052009 {REF} {Length: 1837} {Pfam: Tropomyosin [PF00261.22, score=75.9]; Tropomyosin like [PF12718.9, score=26.9]; Crescentin protein [PF19220.2, score=20.2]} {Celegans: WBGene00002978, lev-11, Tropomyosin isoforms a/b/d/f, [Score=50.8, Expect=2e-07]} {Smed: dd_Smed_v6_1790_0_1, dd_Smed_v6_1790_0_1, [Score=54.3, Expect=8e-09]} {RNA1509_20736, RNA1509_29863} {RNA1310_27668, RNA1509_29863} {RNA1509_29863, RNA815_13494}
4. MligTC455_34212 240 5.01 Mlig455_068457

Neo: -

Age: Up-Down-Up

 ABCA2 0.958 - - - - 0.958 - Mlig455_068457 {REF} {Length: 3147} {TRANSSPLICED} {Pfam: ABC-2 family transporter protein [PF12698.9, score=107.2]; ABC-2 type transporter [PF01061.26, score=104.7]; ABC transporter [PF00005.29, score=101.0]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=34.3]} {Human: ENSG00000107331, ABCA2, ATP binding cassette subfamily A member 2, [Score=122, Expect=7e-28]; ENSG00000144452, ABCA12, ATP binding cassette subfamily A member 12, [Score=122, Expect=8e-28]} {Mouse: ENSMUSG00000026944, Abca2, ATP-binding cassette, sub-family A (ABC1), member 2, [Score=123, Expect=3e-28]; ENSMUSG00000050296, Abca12, ATP-binding cassette, sub-family A (ABC1), member 12, [Score=120, Expect=2e-27]; ENSMUSG00000062017, Abca14, ATP-binding cassette, sub-family A (ABC1), member 14, [Score=119, Expect=4e-27]} {Dmel: FBgn0039594, CG9990, [RH, Score=593, Expect=0.0]} {Celegans: WBGene00000020, abt-2, ABC Transporter family, [Score=114, Expect=1e-25]} {Smed: dd_Smed_v6_10304_0_1, dd_Smed_v6_10304_0_1, [Score=111, Expect=7e-25]} {RNA1509_46884} {RNA1310_8391} {RNA815_2834}
5. MligTC455_28479 185 3.86 Mlig455_070498

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.374

Region-enriched R6: 3.121/0.02492

 PRKG1 0.957 - - - - - 0.957 Mlig455_070498 {REF} {Length: 1832} {Pfam: Protein kinase domain [PF00069.27, score=231.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=118.7]; Kinase-like [PF14531.8, score=24.6]; Cyclic nucleotide-binding domain [PF00027.31, score=21.2]} {Human: ENSG00000185532, PRKG1, protein kinase cGMP-dependent 1, [Score=556, Expect=0.0]} {Mouse: ENSMUSG00000052920, Prkg1, protein kinase, cGMP-dependent, type I, [Score=556, Expect=0.0]} {Dmel: FBgn0000721, for, foraging, [Score=558, Expect=0.0]} {Celegans: WBGene00001173, egl-4, cGMP-dependent protein kinase egl-4, [Score=505, Expect=4e-177]} {Smed: dd_Smed_v6_7139_0_1, dd_Smed_v6_7139_0_1, [Score=598, Expect=0.0]} {RNA1509_25015} {RNA1310_7906} {RNA815_2348.1}
6. MligTC455_48869 95 1.99 Mlig455_052087

Neo: -

Age: -

 CAPS2 0.957 - - - 0.957 - - Mlig455_052087 {REF} {Length: 3395} {TRANSSPLICED} {Human: ENSG00000180881, CAPS2, calcyphosine 2, [RH, Score=209, Expect=9e-61]} {Mouse: ENSMUSG00000035694, Caps2, calcyphosphine 2, [RH, Score=226, Expect=2e-65]} {Dmel: FBgn0051345, CG31345, [Score=63.2, Expect=6e-11]} {Smed: dd_Smed_v6_7209_0_1, dd_Smed_v6_7209_0_1, [Score=71.2, Expect=6e-14]} {RNA1509_44692, RNA1509_53056} {RNA1310_9646.2, RNA1509_53056} {RNA1509_53056, RNA815_2138.1}
7. MligTC455_27990 95 1.97 Mlig455_059682

Neo: -

Age: logFC(26M/2M)=-0.993

 SVOP 0.955 - - - 0.955 - - Mlig455_059682 {REF} {Length: 2530} {Pfam: Major Facilitator Superfamily [PF07690.18, score=112.8]; Sugar (and other) transporter [PF00083.26, score=101.5]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=226, Expect=8e-67]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=219, Expect=2e-64]} {Dmel: FBgn0030331, CG15221, [Score=68.9, Expect=4e-12]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=193, Expect=4e-55]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=247, Expect=6e-76]} {RNA1310_58770} {RNA815_42378}
8. MligTC455_30972 168 3.51 Mlig455_029069, Mlig455_068645, Mlig455_070497

Neo: -

Age: -

Region-enriched R6: 3.424/0.00684

 PRKG1 0.951 - - - - - 0.951

Mlig455_029069 {REF} {Length: 1379} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=34.0]} {RNA1310_15753} {RNA815_42273}

Mlig455_068645 {REF} {Length: 2480} {Pfam: Protein kinase domain [PF00069.27, score=231.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=118.8]; Kinase-like [PF14531.8, score=24.6]} {Human: ENSG00000185532, PRKG1, protein kinase cGMP-dependent 1, [Score=556, Expect=0.0]} {Mouse: ENSMUSG00000052920, Prkg1, protein kinase, cGMP-dependent, type I, [Score=560, Expect=0.0]} {Dmel: FBgn0000721, for, foraging, [Score=557, Expect=0.0]} {Celegans: WBGene00001173, egl-4, cGMP-dependent protein kinase egl-4, [Score=506, Expect=1e-177]} {Smed: dd_Smed_v6_7139_0_1, dd_Smed_v6_7139_0_1, [Score=594, Expect=0.0]} {RNA1509_25015} {RNA1310_7906} {RNA815_2348.1}

Mlig455_070497 {REF} {Length: 247} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=22.9]} {Human: ENSG00000185532, PRKG1, protein kinase cGMP-dependent 1, [Score=53.9, Expect=5e-10]} {Mouse: ENSMUSG00000052920, Prkg1, protein kinase, cGMP-dependent, type I, [Score=53.9, Expect=4e-10]} {Dmel: FBgn0000721, for, foraging, [Score=45.1, Expect=4e-07]} {Celegans: WBGene00015650, pkg-2, Protein Kinase, cGMP-dependent, [Score=42.0, Expect=5e-06]} {Smed: dd_Smed_v6_7139_0_1, dd_Smed_v6_7139_0_1, [Score=47.8, Expect=3e-08]} {RNA1509_25015} {RNA1310_6190.1} {RNA815_2348.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA