M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19507

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19507 14 0.29 Mlig455_018801

Neo: -

Age: logFC(26M/2M)=0.523

 ZAN Mlig455_018801 {REF} {Length: 5393} {Pfam: Kunitz/Bovine pancreatic trypsin inhibitor domain [PF00014.25, score=217.0]; Immunoglobulin I-set domain [PF07679.18, score=98.4]; Immunoglobulin domain [PF13927.8, score=96.9]; Immunoglobulin domain [PF13895.8, score=61.7]; Immunoglobulin V-set domain [PF07686.19, score=35.9]} {Human: ENSG00000146839, ZAN, zonadhesin (gene/pseudogene), [Score=198, Expect=3e-50]} {Mouse: ENSMUSG00000027082, Tfpi, tissue factor pathway inhibitor, [RH, Score=96.7, Expect=5e-21]} {Dmel: FBgn0003137, Ppn, Papilin, [RH, Score=206, Expect=5e-53]} {Celegans: WBGene00003242, mig-6, Papilin, [RH, Score=137, Expect=6e-32]} {Smed: dd_Smed_v6_8833_0_1, dd_Smed_v6_8833_0_1, [RH, Score=159, Expect=5e-39]} {RNA1509_10174, RNA1509_31122} {RNA1310_1561.1, RNA1509_31122} {RNA1509_31122, RNA815_4892}

Cumulative graph for MligTC455_19507

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.165 0.829 1.00000 1.00000
RegionR2 -0.98 0.829 0.99969 1.00000
RegionR3 -0.695 0.829 1.00000 1.00000
RegionR4 0.706 0.829 0.99972 1.00000
RegionR5 -0.582 0.829 1.00000 1.00000
RegionR6 -0.821 0.829 0.99998 1.00000
RegionR7 -0.03 0.829 0.99993 1.00000
RegionR8 0.238 0.829 0.99992 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.876 0.829 0.99990 1.00000
RegenerationR2 2.226 0.829 0.25150 0.69780
RegenerationR3 3.775 0.829 0.38759 0.79422
RegenerationR4 2.442 0.829 0.43676 0.83470
RegenerationR5 2.316 0.829 0.37531 0.78407
RegenerationR6 2.773 0.829 0.41183 0.74528
RegenerationBL -0.469 0.829 0.99990 1.00000
RegenerationTP 2.068 0.829 0.63910 0.98295


Genes with expression patterns similar to MligTC455_19507

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19507 14 0.29 Mlig455_018801

Neo: -

Age: logFC(26M/2M)=0.523

 ZAN 1 - - - - 1.000 - Mlig455_018801 {REF} {Length: 5393} {Pfam: Kunitz/Bovine pancreatic trypsin inhibitor domain [PF00014.25, score=217.0]; Immunoglobulin I-set domain [PF07679.18, score=98.4]; Immunoglobulin domain [PF13927.8, score=96.9]; Immunoglobulin domain [PF13895.8, score=61.7]; Immunoglobulin V-set domain [PF07686.19, score=35.9]} {Human: ENSG00000146839, ZAN, zonadhesin (gene/pseudogene), [Score=198, Expect=3e-50]} {Mouse: ENSMUSG00000027082, Tfpi, tissue factor pathway inhibitor, [RH, Score=96.7, Expect=5e-21]} {Dmel: FBgn0003137, Ppn, Papilin, [RH, Score=206, Expect=5e-53]} {Celegans: WBGene00003242, mig-6, Papilin, [RH, Score=137, Expect=6e-32]} {Smed: dd_Smed_v6_8833_0_1, dd_Smed_v6_8833_0_1, [RH, Score=159, Expect=5e-39]} {RNA1509_10174, RNA1509_31122} {RNA1310_1561.1, RNA1509_31122} {RNA1509_31122, RNA815_4892}
2. MligTC455_19699 114 2.37 Mlig455_012898

Neo: -

Age: -

 GHDC 0.987 - - - - 0.987 - Mlig455_012898 {REF} {Length: 2514} {Pfam: GH3 auxin-responsive promoter [PF03321.15, score=338.2]} {Human: ENSG00000167925, GHDC, GH3 domain containing, [RH, Score=81.6, Expect=1e-15]} {RNA1509_16783, RNA1509_23182} {RNA1310_1835.1, RNA1509_16783, RNA1509_23182} {RNA1509_16783, RNA1509_23182, RNA815_4021}
3. MligTC455_20280 19 0.4 Mlig455_038333

Neo: -

Age: -

 0.985 - - - - 0.985 - Mlig455_038333 {REF} {Length: 4634} {RNA1509_41110} {RNA1310_4694.1} {RNA815_28840}
4. MligTC455_32144 78 1.63 Mlig455_056452

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.687

 0.979 - - - - 0.979 - Mlig455_056452 {REF} {Length: 1837} {TRANSSPLICED} {Smed: dd_Smed_v6_9974_1_8, dd_Smed_v6_9974_1_8, [Score=72.0, Expect=1e-15]} {RNA1509_31775} {RNA1310_15305} {RNA815_29.1}
5. MligTC455_57742 31 0.66 Mlig455_062810

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_062810 {REF} {Length: 356} {NoTransDecoderORF}
6. MligTC455_39452 312 6.5 Mlig455_006309, Mlig455_007633, Mlig455_032279, Mlig455_063014, Mlig455_063016

Neo: -

Age: Down-Up-Down

 0.976 - - - - 0.976 -

Mlig455_006309 {REF} {Length: 157} {NoTransDecoderORF} {RNA1509_32997} {RNA1310_7467} {RNA815_50376}

Mlig455_007633 {REF} {Length: 3588} {Pfam: Phage integrase family [PF00589.24, score=23.0]} {RNA1509_4722} {RNA1310_655.1} {RNA815_335.1}

Mlig455_032279 {REF} {Length: 328} {NoTransDecoderORF} {RNA1509_32997} {RNA1310_7467} {RNA815_50376}

Mlig455_063014 {REF} {Length: 3040} {RNA1509_32997} {RNA1310_7467} {RNA815_11709}

Mlig455_063016 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_32997} {RNA1310_7467} {RNA815_50376}
7. MligTC455_03349 160 3.34 Mlig455_059510

Neo: -

Age: -

 PPCS 0.974 - - - - 0.974 - Mlig455_059510 {REF} {Length: 3149} {TRANSSPLICED} {Pfam: DNA / pantothenate metabolism flavoprotein [PF04127.17, score=56.3]} {Human: ENSG00000127125, PPCS, phosphopantothenoylcysteine synthetase, [RH, Score=217, Expect=1e-68]} {Mouse: ENSMUSG00000028636, Ppcs, phosphopantothenoylcysteine synthetase, [RH, Score=191, Expect=1e-58]} {Dmel: FBgn0261285, Ppcs, Phosphopantothenoylcysteine synthetase, [RH, Score=199, Expect=5e-62]} {Celegans: WBGene00022171, Y71H2AM.6, [RH, Score=182, Expect=5e-56]} {Smed: dd_Smed_v6_9697_0_1, dd_Smed_v6_9697_0_1, [RH, Score=220, Expect=3e-70]} {RNA1509_27184} {RNA1310_20396, RNA1509_27184} {RNA1509_27184, RNA815_15075}
8. MligTC455_15406 42 0.88 Mlig455_035464

Neo: -

Age: -

 SLC5A7 0.969 - - - - 0.969 - Mlig455_035464 {REF} {Length: 4082} {Pfam: Sodium:solute symporter family [PF00474.19, score=79.3]} {Human: ENSG00000115665, SLC5A7, solute carrier family 5 member 7, [Score=462, Expect=2e-157]} {Mouse: ENSMUSG00000023945, Slc5a7, solute carrier family 5 (choline transporter), member 7, [Score=457, Expect=2e-155]} {Dmel: FBgn0038641, CG7708, [Score=450, Expect=2e-152]} {Celegans: WBGene00000501, cho-1, High-affinity choline transporter 1, [Score=451, Expect=2e-153]} {Smed: dd_Smed_v6_12883_0_1, dd_Smed_v6_12883_0_1, [Score=489, Expect=3e-168]} {RNA1509_18097} {RNA1310_50204.1} {RNA815_39429}
9. MligTC455_53082 150 3.12 Mlig455_068679

Neo: -

Age: Down-Up-Down

 SLC22A7 0.967 - - - - 0.967 - Mlig455_068679 {REF} {Length: 2040} {Pfam: Sugar (and other) transporter [PF00083.26, score=95.6]; Major Facilitator Superfamily [PF07690.18, score=46.0]} {Human: ENSG00000137204, SLC22A7, solute carrier family 22 member 7, [Score=197, Expect=2e-55]} {Mouse: ENSMUSG00000067144, Slc22a7, solute carrier family 22 (organic anion transporter), member 7, [Score=189, Expect=1e-52]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=181, Expect=7e-50]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [Score=192, Expect=8e-54]} {Celegans: WBGene00022348, Y82E9BR.16, [Score=169, Expect=2e-45]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=167, Expect=5e-45]} {RNA1509_47524} {RNA1310_11382} {RNA815_3922}
10. MligTC455_13820 10 0.21 Mlig455_030340

Neo: -

Age: logFC(26M/2M)=-0.872

 0.965 - - - - 0.965 - Mlig455_030340 {REF} {Length: 486} {NoTransDecoderORF} {RNA1310_26756} {RNA815_28619}
11. MligTC455_46729 214 4.45 Mlig455_024617

Neo: Int S/G2/M

Age: -

 0.964 - - - - 0.964 - Mlig455_024617 {REF} {Length: 2532} {TRANSSPLICED} {RNA1509_48335} {RNA1310_40748, RNA1509_48335} {RNA1509_48335, RNA815_27560}
12. MligTC455_36512 38 0.79 Mlig455_060513

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_060513 {REF} {Length: 1647} {RNA1509_58517} {RNA1310_119093.1} {RNA815_19725.1}
13. MligTC455_37424 15 0.32 Mlig455_026287

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_026287 {REF} {Length: 1087} {RNA1509_43962} {RNA1310_29023} {RNA815_25289}
14. MligTC455_11913 18 0.37 Mlig455_034418, Mlig455_034461

Neo: -

Age: -

 0.958 - - - - 0.958 -

Mlig455_034418 {REF} {Length: 1771} {RNA1310_104880} {RNA815_60750}

Mlig455_034461 {REF} {Length: 175} {NoTransDecoderORF}
15. MligTC455_30753 196 4.08 Mlig455_007631, Mlig455_032277, Mlig455_035099

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.375

 0.958 - - - - 0.958 -

Mlig455_007631 {REF} {Length: 7635} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=106.9]} {RNA1509_32997} {RNA1310_5547.1, RNA1509_32997} {RNA1509_32997, RNA815_11709}

Mlig455_032277 {REF} {Length: 4767} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=173.1]; Family of unknown function (DUF5641) [PF18701.3, score=49.7]; Putative peptidase (DUF1758) [PF05585.14, score=39.7]; Integrase zinc binding domain [PF17921.3, score=36.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=22.5]; Ty3 transposon peptidase [PF12384.10, score=19.0]} {Celegans: WBGene00044435, Y20F4.8, [Score=71.6, Expect=9e-13]} {Smed: dd_Smed_v6_42915_0_1, dd_Smed_v6_42915_0_1, [Score=65.1, Expect=4e-12]} {RNA1509_32997} {RNA1310_7467} {RNA815_11709}

Mlig455_035099 {REF} {Length: 624} {Pfam: Putative peptidase (DUF1758) [PF05585.14, score=46.8]; Ty3 transposon peptidase [PF12384.10, score=24.6]; Aspartyl protease [PF13650.8, score=20.7]} {RNA1509_32997} {RNA1310_5547.3} {RNA815_42881}
16. MligTC455_29335 36 0.75 Mlig455_019697

Neo: -

Age: -

 DOCK11 0.957 - - - - 0.957 - Mlig455_019697 {REF} {Length: 2704} {Pfam: C2 domain in Dock180 and Zizimin proteins [PF14429.8, score=99.4]; Domain of unknown function (DUF3398) [PF11878.10, score=31.7]} {Human: ENSG00000147251, DOCK11, dedicator of cytokinesis 11, [Score=200, Expect=3e-52]; ENSG00000135905, DOCK10, dedicator of cytokinesis 10, [Score=196, Expect=5e-51]} {Mouse: ENSMUSG00000031093, Dock11, dedicator of cytokinesis 11, [Score=201, Expect=8e-53]; ENSMUSG00000038608, Dock10, dedicator of cytokinesis 10, [Score=193, Expect=3e-50]} {Dmel: FBgn0260486, Ziz, Zizimin, [Score=154, Expect=7e-38]} {Celegans: WBGene00009065, F22G12.5, [Score=107, Expect=3e-23]} {Smed: dd_Smed_v6_2660_0_5, dd_Smed_v6_2660_0_5, [Score=127, Expect=1e-29]} {RNA1509_10943} {RNA1310_527.1} {RNA815_3082}
17. MligTC455_51716 160 3.34 Mlig455_070217

Neo: -

Age: Up-Down-Down

 0.957 - - - - 0.957 - Mlig455_070217 {REF} {Length: 2635} {RNA1509_54215} {RNA1310_88667, RNA1509_54215} {RNA1509_54215, RNA815_36352}
18. MligTC455_06204 24 0.51 Mlig455_045691

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_045691 {REF} {Length: 416} {NoTransDecoderORF} {RNA1310_44363} {RNA815_20199}
19. MligTC455_33247 195 4.05 Mlig455_055108

Neo: -

Age: logFC(26M/2M)=0.580

Region-enriched R6: 8.033/0.01263

 0.956 - - - - 0.956 - Mlig455_055108 {REF} {Length: 1768} {Pfam: Lectin C-type domain [PF00059.23, score=75.8]; UL45 protein, carbohydrate-binding C-type lectin-like [PF05473.14, score=23.7]} {Celegans: WBGene00020191, clec-53, C-type LECtin, [Score=63.5, Expect=7e-11]} {Smed: dd_Smed_v6_1489_0_1, dd_Smed_v6_1489_0_1, [Score=48.9, Expect=5e-06]} {RNA1509_2975} {RNA1310_16046.1} {RNA815_4830.2}
20. MligTC455_40903 29 0.6 Mlig455_050378

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_050378 {REF} {Length: 1235} {TRANSSPLICED} {RNA1310_125379} {RNA815_47692}
21. MligTC455_40036 9 0.19 Mlig455_027002

Neo: -

Age: -

 KCNK18 0.954 - - - - 0.954 - Mlig455_027002 {REF} {Length: 3523} {Pfam: Ion channel [PF07885.18, score=113.3]; Ion transport protein [PF00520.33, score=30.5]} {Human: ENSG00000186795, KCNK18, potassium two pore domain channel subfamily K member 18, [Score=84.0, Expect=1e-16]} {Mouse: ENSMUSG00000040901, Kcnk18, potassium channel, subfamily K, member 18, [Score=85.9, Expect=2e-17]} {Dmel: FBgn0033257, sand, sandman, [RH, Score=144, Expect=4e-37]} {Celegans: WBGene00010784, twk-48, TWiK family of potassium channels, [Score=164, Expect=2e-44]} {Smed: dd_Smed_v6_13333_0_1, dd_Smed_v6_13333_0_1, [RH, Score=213, Expect=2e-61]} {RNA1509_52667} {RNA1310_10381} {RNA815_59005}
22. MligTC455_51989 2 0.05 Mlig455_051194

Neo: -

Age: Up-Down-Up

 PLEKHG5 0.954 - - - - 0.954 - Mlig455_051194 {REF} {Length: 3355} {Pfam: RhoGEF domain [PF00621.22, score=89.4]} {Human: ENSG00000171680, PLEKHG5, pleckstrin homology and RhoGEF domain containing G5, [Score=139, Expect=1e-33]} {Mouse: ENSMUSG00000039713, Plekhg5, pleckstrin homology domain containing, family G (with RhoGef domain) member 5, [Score=144, Expect=4e-35]} {Dmel: FBgn0261556, CG42674, [Score=148, Expect=1e-36]} {Celegans: WBGene00006476, rhgf-2, RHGF-2; RHo Guanine nucleotide exchange Factor, [Score=81.3, Expect=1e-15]} {Smed: dd_Smed_v6_10072_0_1, dd_Smed_v6_10072_0_1, [Score=117, Expect=3e-27]} {RNA1509_23460} {RNA1310_8231} {RNA815_5839}
23. MligTC455_11670 26 0.54 Mlig455_022267

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_022267 {REF} {Length: 2297} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=66.2, Expect=1e-13]} {RNA1509_9737} {RNA1310_40326.1} {RNA815_35436}
24. MligTC455_28565 29 0.6 Mlig455_041095

Neo: -

Age: -

 PCDH9 0.953 - - - - 0.953 - Mlig455_041095 {REF} {Length: 4027} {Pfam: Cadherin domain [PF00028.19, score=246.7]; Cadherin-like [PF16184.7, score=38.6]} {Human: ENSG00000184226, PCDH9, protocadherin 9, [Score=244, Expect=5e-66]} {Mouse: ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=241, Expect=4e-65]; ENSMUSG00000036862, Dchs1, dachsous cadherin related 1, [Score=231, Expect=1e-61]; ENSMUSG00000104148, Pcdha2, protocadherin alpha 2, [Score=229, Expect=2e-62]} {Dmel: FBgn0001075, ft, fat, [Score=239, Expect=3e-64]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=200, Expect=5e-52]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [Score=261, Expect=4e-72]} {RNA1310_13659} {RNA815_48903}
25. MligTC455_08061 14 0.29 Mlig455_062790

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_062790 {REF} {Length: 604} {NoTransDecoderORF} {RNA1310_101890}
26. MligTC455_12200 402 8.38 Mlig455_056707, Mlig455_060314

Neo: -

Age: Down-Up-Up

Region-enriched R3: 6.181/0.00003
Region-enriched R4: 4.726/0.01199

 0.951 - - - - 0.951 -

Mlig455_056707 {REF} {Length: 1565} {RNA1509_33681} {RNA1310_21613} {RNA815_8987.1}

Mlig455_060314 {REF} {Length: 1642} {RNA1509_33681} {RNA1310_21613, RNA1509_33681} {RNA1509_33681, RNA815_8987.1}
27. MligTC455_29729 3 0.05 Mlig455_060721

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_060721 {REF} {Length: 3236} {Pfam: Mab-21 protein [PF03281.16, score=20.9]} {RNA1509_27730} {RNA1310_1764.1} {RNA815_2426.1}
28. MligTC455_07212 41 0.85 Mlig455_020125

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_020125 {REF} {Length: 949} {TRANSSPLICED} {RNA1509_32443, RNA1509_51241} {RNA1310_24373, RNA1509_32443, RNA1509_51241} {RNA1509_32443, RNA1509_51241, RNA815_57461}
29. MligTC455_25539 11 0.23 Mlig455_059416

Neo: -

Age: -

 TSPAN33 0.95 - - - - 0.950 - Mlig455_059416 {REF} {Length: 1673} {Pfam: Tetraspanin family [PF00335.22, score=179.3]} {Human: ENSG00000158457, TSPAN33, tetraspanin 33, [RH, Score=216, Expect=8e-68]} {Mouse: ENSMUSG00000001763, Tspan33, tetraspanin 33, [RH, Score=211, Expect=3e-66]} {Dmel: FBgn0040334, Tsp3A, Tetraspanin 3A, [RH, Score=201, Expect=5e-62]} {Celegans: WBGene00006640, tsp-14, Tetraspanin, [RH, Score=124, Expect=1e-31]} {Smed: dd_Smed_v6_2025_0_1, dd_Smed_v6_2025_0_1, [RH, Score=155, Expect=8e-45]} {RNA1509_54077} {RNA1310_26913} {RNA815_14688}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA