M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13820

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13820 10 0.21 Mlig455_030340

Neo: -

Age: logFC(26M/2M)=-0.872

 Mlig455_030340 {REF} {Length: 486} {NoTransDecoderORF} {RNA1310_26756} {RNA815_28619}

Cumulative graph for MligTC455_13820

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.516 0.678 1.00000 1.00000
RegionR2 -0.705 0.678 1.00000 1.00000
RegionR3 -0.196 0.678 0.99966 1.00000
RegionR4 0.623 0.678 1.00000 1.00000
RegionR5 0.053 0.678 1.00000 1.00000
RegionR6 -0.256 0.678 1.00000 1.00000
RegionR7 -0.151 0.678 1.00000 1.00000
RegionR8 0.115 0.678 0.99985 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.733 0.678 1.00000 1.00000
RegenerationR2 2.08 0.678 0.53389 0.88613
RegenerationR3 1.936 0.678 0.69581 0.94620
RegenerationR4 2.441 0.678 0.66655 0.94093
RegenerationR5 -0.514 0.678 1.00000 1.00000
RegenerationR6 2.902 0.678 0.59459 0.86603
RegenerationBL -0.514 0.678 0.99965 1.00000
RegenerationTP -0.529 0.678 0.99966 1.00000


Genes with expression patterns similar to MligTC455_13820

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13820 10 0.21 Mlig455_030340

Neo: -

Age: logFC(26M/2M)=-0.872

 2 - - - 1.000 1.000 - Mlig455_030340 {REF} {Length: 486} {NoTransDecoderORF} {RNA1310_26756} {RNA815_28619}
2. MligTC455_07212 41 0.85 Mlig455_020125

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_020125 {REF} {Length: 949} {TRANSSPLICED} {RNA1509_32443, RNA1509_51241} {RNA1310_24373, RNA1509_32443, RNA1509_51241} {RNA1509_32443, RNA1509_51241, RNA815_57461}
3. MligTC455_03349 160 3.34 Mlig455_059510

Neo: -

Age: -

 PPCS 0.991 - - - - 0.991 - Mlig455_059510 {REF} {Length: 3149} {TRANSSPLICED} {Pfam: DNA / pantothenate metabolism flavoprotein [PF04127.17, score=56.3]} {Human: ENSG00000127125, PPCS, phosphopantothenoylcysteine synthetase, [RH, Score=217, Expect=1e-68]} {Mouse: ENSMUSG00000028636, Ppcs, phosphopantothenoylcysteine synthetase, [RH, Score=191, Expect=1e-58]} {Dmel: FBgn0261285, Ppcs, Phosphopantothenoylcysteine synthetase, [RH, Score=199, Expect=5e-62]} {Celegans: WBGene00022171, Y71H2AM.6, [RH, Score=182, Expect=5e-56]} {Smed: dd_Smed_v6_9697_0_1, dd_Smed_v6_9697_0_1, [RH, Score=220, Expect=3e-70]} {RNA1509_27184} {RNA1310_20396, RNA1509_27184} {RNA1509_27184, RNA815_15075}
4. MligTC455_19699 114 2.37 Mlig455_012898

Neo: -

Age: -

 GHDC 0.986 - - - - 0.986 - Mlig455_012898 {REF} {Length: 2514} {Pfam: GH3 auxin-responsive promoter [PF03321.15, score=338.2]} {Human: ENSG00000167925, GHDC, GH3 domain containing, [RH, Score=81.6, Expect=1e-15]} {RNA1509_16783, RNA1509_23182} {RNA1310_1835.1, RNA1509_16783, RNA1509_23182} {RNA1509_16783, RNA1509_23182, RNA815_4021}
5. MligTC455_38156 18 0.38 Mlig455_042121

Neo: -

Age: -

 ATP7A 0.973 - - - - 0.973 - Mlig455_042121 {REF} {Length: 5074} {TRANSSPLICED} {Pfam: Heavy-metal-associated domain [PF00403.28, score=274.9]; E1-E2 ATPase [PF00122.22, score=156.0]; haloacid dehalogenase-like hydrolase [PF00702.28, score=155.4]; haloacid dehalogenase-like hydrolase [PF08282.14, score=34.0]} {Human: ENSG00000165240, ATP7A, ATPase copper transporting alpha, [RH, Score=1022, Expect=0.0]; ENSG00000123191, ATP7B, ATPase copper transporting beta, [RH, Score=991, Expect=0.0]} {Mouse: ENSMUSG00000033792, Atp7a, ATPase, Cu++ transporting, alpha polypeptide, [RH, Score=1034, Expect=0.0]} {Dmel: FBgn0030343, ATP7, [RH, Score=916, Expect=0.0]} {Celegans: WBGene00000834, cua-1, CU (Copper) ATPase; Copper transporting ATPase, [RH, Score=789, Expect=0.0]} {Smed: dd_Smed_v6_7126_0_1, dd_Smed_v6_7126_0_1, [RH, Score=992, Expect=0.0]} {RNA1509_10172, RNA1509_15890, RNA1509_31821} {RNA1310_1414, RNA1509_10172, RNA1509_15890, RNA1509_31821} {RNA1509_10172, RNA1509_15890, RNA1509_31821, RNA815_389}
6. MligTC455_11166 137 2.85 Mlig455_001472

Neo: -

Age: Up-Up-Down

 0.969 - - - - 0.969 - Mlig455_001472 {REF} {Length: 3543} {Pfam: Beta-lactamase [PF00144.26, score=76.3]} {RNA1509_17855} {RNA1310_14062, RNA1509_17855} {RNA1509_17855, RNA815_7859}
7. MligTC455_05820 56 1.16 Mlig455_069219

Neo: Germline

Age: -

 0.967 - - - - 0.967 - Mlig455_069219 {REF} {Length: 1028}
8. MligTC455_07092 12 0.24 Mlig455_050400

Neo: -

Age: Down-Up-Up

 0.967 - - - - 0.967 - Mlig455_050400 {REF} {Length: 1193} {TRANSSPLICED} {RNA1509_13268} {RNA1310_2251.1} {RNA815_8327}
9. MligTC455_32260 4 0.08 Mlig455_036086

Neo: -

Age: Up-Down-Down

 0.967 - - - - 0.967 - Mlig455_036086 {REF} {Length: 3691} {TRANSSPLICED} {Pfam: Integrase core domain [PF00665.28, score=46.8]; Mab-21 protein [PF03281.16, score=37.1]; Ankyrin repeats (many copies) [PF13637.8, score=21.5]; Zinc knuckle [PF00098.25, score=19.9]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=63.9, Expect=2e-10]} {RNA1509_11087} {RNA1310_25836.1} {RNA815_3666.1}
10. MligTC455_19507 14 0.29 Mlig455_018801

Neo: -

Age: logFC(26M/2M)=0.523

 ZAN 0.965 - - - - 0.965 - Mlig455_018801 {REF} {Length: 5393} {Pfam: Kunitz/Bovine pancreatic trypsin inhibitor domain [PF00014.25, score=217.0]; Immunoglobulin I-set domain [PF07679.18, score=98.4]; Immunoglobulin domain [PF13927.8, score=96.9]; Immunoglobulin domain [PF13895.8, score=61.7]; Immunoglobulin V-set domain [PF07686.19, score=35.9]} {Human: ENSG00000146839, ZAN, zonadhesin (gene/pseudogene), [Score=198, Expect=3e-50]} {Mouse: ENSMUSG00000027082, Tfpi, tissue factor pathway inhibitor, [RH, Score=96.7, Expect=5e-21]} {Dmel: FBgn0003137, Ppn, Papilin, [RH, Score=206, Expect=5e-53]} {Celegans: WBGene00003242, mig-6, Papilin, [RH, Score=137, Expect=6e-32]} {Smed: dd_Smed_v6_8833_0_1, dd_Smed_v6_8833_0_1, [RH, Score=159, Expect=5e-39]} {RNA1509_10174, RNA1509_31122} {RNA1310_1561.1, RNA1509_31122} {RNA1509_31122, RNA815_4892}
11. MligTC455_25800 19 0.39 Mlig455_020935

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_020935 {REF} {Length: 1333} {Smed: dd_Smed_v6_91651_0_1, dd_Smed_v6_91651_0_1, [RH, Score=54.7, Expect=7e-10]} {RNA1509_46103} {RNA1310_6410.1} {RNA815_31889}
12. MligTC455_15366 4 0.07 Mlig455_032670

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_032670 {REF} {Length: 1354} {Smed: dd_Smed_v6_1477_1_1, dd_Smed_v6_1477_1_1, [Score=45.1, Expect=5e-06]} {RNA1310_32867}
13. MligTC455_15406 42 0.88 Mlig455_035464

Neo: -

Age: -

 SLC5A7 0.964 - - - - 0.964 - Mlig455_035464 {REF} {Length: 4082} {Pfam: Sodium:solute symporter family [PF00474.19, score=79.3]} {Human: ENSG00000115665, SLC5A7, solute carrier family 5 member 7, [Score=462, Expect=2e-157]} {Mouse: ENSMUSG00000023945, Slc5a7, solute carrier family 5 (choline transporter), member 7, [Score=457, Expect=2e-155]} {Dmel: FBgn0038641, CG7708, [Score=450, Expect=2e-152]} {Celegans: WBGene00000501, cho-1, High-affinity choline transporter 1, [Score=451, Expect=2e-153]} {Smed: dd_Smed_v6_12883_0_1, dd_Smed_v6_12883_0_1, [Score=489, Expect=3e-168]} {RNA1509_18097} {RNA1310_50204.1} {RNA815_39429}
14. MligTC455_53084 31 0.64 Mlig455_032500

Neo: -

Age: -

 SLC22A6 0.964 - - - - 0.964 - Mlig455_032500 {REF} {Length: 2144} {Human: ENSG00000197901, SLC22A6, solute carrier family 22 member 6, [Score=119, Expect=8e-31]; ENSG00000172940, SLC22A13, solute carrier family 22 member 13, [Score=116, Expect=8e-30]; ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=114, Expect=5e-29]} {Mouse: ENSMUSG00000074028, Slc22a13, solute carrier family 22 (organic cation transporter), member 13, [Score=122, Expect=3e-32]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=120, Expect=2e-31]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [Score=124, Expect=1e-32]} {Celegans: WBGene00022348, Y82E9BR.16, [Score=97.8, Expect=2e-23]} {Smed: dd_Smed_v6_10826_0_1, dd_Smed_v6_10826_0_1, [Score=95.9, Expect=1e-24]} {RNA1509_47524} {RNA1310_11382, RNA1509_47524} {RNA1509_47524, RNA815_3922}
15. MligTC455_29335 36 0.75 Mlig455_019697

Neo: -

Age: -

 DOCK11 0.963 - - - - 0.963 - Mlig455_019697 {REF} {Length: 2704} {Pfam: C2 domain in Dock180 and Zizimin proteins [PF14429.8, score=99.4]; Domain of unknown function (DUF3398) [PF11878.10, score=31.7]} {Human: ENSG00000147251, DOCK11, dedicator of cytokinesis 11, [Score=200, Expect=3e-52]; ENSG00000135905, DOCK10, dedicator of cytokinesis 10, [Score=196, Expect=5e-51]} {Mouse: ENSMUSG00000031093, Dock11, dedicator of cytokinesis 11, [Score=201, Expect=8e-53]; ENSMUSG00000038608, Dock10, dedicator of cytokinesis 10, [Score=193, Expect=3e-50]} {Dmel: FBgn0260486, Ziz, Zizimin, [Score=154, Expect=7e-38]} {Celegans: WBGene00009065, F22G12.5, [Score=107, Expect=3e-23]} {Smed: dd_Smed_v6_2660_0_5, dd_Smed_v6_2660_0_5, [Score=127, Expect=1e-29]} {RNA1509_10943} {RNA1310_527.1} {RNA815_3082}
16. MligTC455_39631 51 1.06 Mlig455_013952

Neo: -

Age: Up-Down-Down

Region-enriched R2: 4.442/0.04477

 APBA1 0.963 - - - 0.963 - - Mlig455_013952 {REF} {Length: 5620} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=122.7]; PDZ domain [PF00595.26, score=86.8]; PDZ domain [PF17820.3, score=50.5]} {Human: ENSG00000107282, APBA1, amyloid beta precursor protein binding family A member 1, [RH, Score=478, Expect=3e-157]; ENSG00000034053, APBA2, amyloid beta precursor protein binding family A member 2, [RH, Score=475, Expect=2e-157]; ENSG00000276495, APBA2, amyloid beta precursor protein binding family A member 2, [RH, Score=475, Expect=2e-157]; ENSG00000276497, APBA1, amyloid beta precursor protein binding family A member 1, [RH, Score=474, Expect=3e-161]} {Mouse: ENSMUSG00000030519, Apba2, amyloid beta (A4) precursor protein-binding, family A, member 2, [RH, Score=477, Expect=2e-158]; ENSMUSG00000024897, Apba1, amyloid beta (A4) precursor protein binding, family A, member 1, [RH, Score=476, Expect=9e-157]} {Dmel: FBgn0052677, X11Lbeta, [Score=533, Expect=2e-168]} {Celegans: WBGene00002999, lin-10, [Score=520, Expect=1e-172]} {Smed: dd_Smed_v6_2836_0_2, dd_Smed_v6_2836_0_2, [Score=551, Expect=0.0]} {RNA1509_55204} {RNA1310_18864.1, RNA1509_55204} {RNA1509_55204, RNA815_11653}
17. MligTC455_28433 44 0.92 Mlig455_039556, Mlig455_051361

Neo: -

Age: -

 0.962 - - - - 0.962 -

Mlig455_039556 {REF} {Length: 3654} {Pfam: hAT family C-terminal dimerisation region [PF05699.16, score=33.4]} {RNA1509_33160} {RNA1310_6176.1} {RNA815_7664}

Mlig455_051361 {REF} {Length: 2240} {Smed: dd_Smed_v6_17002_0_4, dd_Smed_v6_17002_0_4, [Score=60.8, Expect=1e-09]} {RNA1509_33160} {RNA1310_6176.1} {RNA815_7664}
18. MligTC455_50842 33 0.68 Mlig455_046712

Neo: Germline

Age: logFC(26M/2M)=-0.808

 ARHGAP11A 0.962 - - - - 0.962 - Mlig455_046712 {REF} {Length: 2034} {Pfam: RhoGAP domain [PF00620.29, score=117.4]} {Human: ENSG00000198826, ARHGAP11A, Rho GTPase activating protein 11A, [RH, Score=126, Expect=1e-30]; ENSG00000275568, ARHGAP11A, Rho GTPase activating protein 11A, [RH, Score=126, Expect=1e-30]; ENSG00000282168, ARHGAP11A, Rho GTPase activating protein 11A, [RH, Score=124, Expect=5e-31]} {Mouse: ENSMUSG00000041219, Arhgap11a, Rho GTPase activating protein 11A, [RH, Score=115, Expect=6e-28]} {Dmel: FBgn0259216, RhoGAP102A, Rho GTPase activating protein at 102A, [RH, Score=75.9, Expect=2e-14]} {Celegans: WBGene00001559, gei-1, GEX Interacting protein, [Score=89.0, Expect=1e-18]} {Smed: dd_Smed_v6_6320_0_1, dd_Smed_v6_6320_0_1, [Score=93.2, Expect=2e-20]} {RNA1509_48726} {RNA1310_15193, RNA1509_48726} {RNA1509_48726, RNA815_14855}
19. MligTC455_20280 19 0.4 Mlig455_038333

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_038333 {REF} {Length: 4634} {RNA1509_41110} {RNA1310_4694.1} {RNA815_28840}
20. MligTC455_46729 214 4.45 Mlig455_024617

Neo: Int S/G2/M

Age: -

 0.96 - - - - 0.960 - Mlig455_024617 {REF} {Length: 2532} {TRANSSPLICED} {RNA1509_48335} {RNA1310_40748, RNA1509_48335} {RNA1509_48335, RNA815_27560}
21. MligTC455_49274 9 0.2 Mlig455_048388

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_048388 {REF} {Length: 755} {NoTransDecoderORF} {RNA1310_108462}
22. MligTC455_11402 21 0.44 Mlig455_058743

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_058743 {REF} {Length: 1111} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59423} {RNA1310_39651} {RNA815_29881}
23. MligTC455_29729 3 0.05 Mlig455_060721

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_060721 {REF} {Length: 3236} {Pfam: Mab-21 protein [PF03281.16, score=20.9]} {RNA1509_27730} {RNA1310_1764.1} {RNA815_2426.1}
24. MligTC455_40903 29 0.6 Mlig455_050378

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_050378 {REF} {Length: 1235} {TRANSSPLICED} {RNA1310_125379} {RNA815_47692}
25. MligTC455_11913 18 0.37 Mlig455_034418, Mlig455_034461

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_034418 {REF} {Length: 1771} {RNA1310_104880} {RNA815_60750}

Mlig455_034461 {REF} {Length: 175} {NoTransDecoderORF}
26. MligTC455_12200 402 8.38 Mlig455_056707, Mlig455_060314

Neo: -

Age: Down-Up-Up

Region-enriched R3: 6.181/0.00003
Region-enriched R4: 4.726/0.01199

 0.955 - - - - 0.955 -

Mlig455_056707 {REF} {Length: 1565} {RNA1509_33681} {RNA1310_21613} {RNA815_8987.1}

Mlig455_060314 {REF} {Length: 1642} {RNA1509_33681} {RNA1310_21613, RNA1509_33681} {RNA1509_33681, RNA815_8987.1}
27. MligTC455_50843 66 1.38 Mlig455_046856

Neo: Germline

Age: Down-Up-Down

 ARHGAP11A 0.955 - - - - 0.955 - Mlig455_046856 {REF} {Length: 1901} {Pfam: RhoGAP domain [PF00620.29, score=92.0]} {Human: ENSG00000198826, ARHGAP11A, Rho GTPase activating protein 11A, [Score=90.1, Expect=7e-19]; ENSG00000275568, ARHGAP11A, Rho GTPase activating protein 11A, [Score=90.1, Expect=7e-19]; ENSG00000282168, ARHGAP11A, Rho GTPase activating protein 11A, [Score=89.0, Expect=1e-18]} {Mouse: ENSMUSG00000041219, Arhgap11a, Rho GTPase activating protein 11A, [Score=81.3, Expect=2e-16]} {Dmel: FBgn0038747, RhoGAP92B, Rho GTPase activating protein at 92B, [Score=63.5, Expect=1e-10]} {Celegans: WBGene00001559, gei-1, GEX Interacting protein, [Score=84.3, Expect=2e-17]} {Smed: dd_Smed_v6_6320_0_1, dd_Smed_v6_6320_0_1, [Score=70.9, Expect=3e-13]} {RNA1509_48726} {RNA1310_15193} {RNA815_14855}
28. MligTC455_18941 24 0.5 Mlig455_001833, Mlig455_062225

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_001833 {REF} {Length: 226} {NoTransDecoderORF} {RNA1509_59635} {RNA1310_47855} {RNA815_26284}

Mlig455_062225 {REF} {Length: 283} {NoTransDecoderORF} {RNA1509_34461} {RNA1310_47855} {RNA815_26284}
29. MligTC455_21949 42 0.88 Mlig455_011909

Neo: Int S/G2/M

Age: logFC(26M/2M)=1.149

 0.952 - - - - 0.952 - Mlig455_011909 {REF} {Length: 2730} {RNA1509_59141} {RNA1310_57197} {RNA815_37903}
30. MligTC455_42128 360 7.51 Mlig455_014669

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.718

Region-enriched R3: 6.879/0.00000

 MRC1 0.952 - - - - 0.952 - Mlig455_014669 {REF} {Length: 1514} {Pfam: Lectin C-type domain [PF00059.23, score=95.0]; UL45 protein, carbohydrate-binding C-type lectin-like [PF05473.14, score=20.2]} {Human: ENSG00000260314, MRC1, mannose receptor C-type 1, [Score=77.4, Expect=4e-15]; ENSG00000130287, NCAN, neurocan, [Score=75.1, Expect=2e-14]} {Mouse: ENSMUSG00000002341, Ncan, neurocan, [Score=73.9, Expect=4e-14]} {Celegans: WBGene00012253, clec-50, C-type LECtin, [Score=61.2, Expect=2e-10]} {Smed: dd_Smed_v6_2649_0_2, dd_Smed_v6_2649_0_2, [Score=50.8, Expect=5e-07]} {RNA1509_35559} {RNA1310_32168.1} {RNA815_14861}
31. MligTC455_25067 1268 26.41 Mlig455_010546, Mlig455_061790, Mlig455_061830

Neo: -

Age: Down-Down-Up

Region-enriched R3: 3.775/0.00039
Region-enriched R4: 2.755/0.02795
Region-enriched R5: 2.464/0.02341

 0.951 - - - - 0.951 -

Mlig455_010546 {REF} {Length: 1067} {Pfam: Pacifastin inhibitor (LCMII) [PF05375.15, score=23.7]} {RNA1509_10254, RNA1509_23808} {RNA1310_73349, RNA1509_10254, RNA1509_23808} {RNA1509_10254, RNA1509_23808, RNA815_41780}

Mlig455_061790 {REF} {Length: 642} {Pfam: Pacifastin inhibitor (LCMII) [PF05375.15, score=23.7]} {RNA1509_23808} {RNA1310_73349} {RNA815_41780}

Mlig455_061830 {REF} {Length: 681} {Pfam: Pacifastin inhibitor (LCMII) [PF05375.15, score=23.7]} {RNA1509_23808} {RNA1310_73349} {RNA815_41780}
32. MligTC455_53082 150 3.12 Mlig455_068679

Neo: -

Age: Down-Up-Down

 SLC22A7 0.95 - - - - 0.950 - Mlig455_068679 {REF} {Length: 2040} {Pfam: Sugar (and other) transporter [PF00083.26, score=95.6]; Major Facilitator Superfamily [PF07690.18, score=46.0]} {Human: ENSG00000137204, SLC22A7, solute carrier family 22 member 7, [Score=197, Expect=2e-55]} {Mouse: ENSMUSG00000067144, Slc22a7, solute carrier family 22 (organic anion transporter), member 7, [Score=189, Expect=1e-52]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=181, Expect=7e-50]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [Score=192, Expect=8e-54]} {Celegans: WBGene00022348, Y82E9BR.16, [Score=169, Expect=2e-45]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=167, Expect=5e-45]} {RNA1509_47524} {RNA1310_11382} {RNA815_3922}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA