TomoSeq data search

Data search

Results for MligTC455_19569

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_19569	25	0.52	Mlig455_062568	Neo: - Age: -		Mlig455_062568 {REF} {Length: 3003} {Pfam: Ammonium Transporter Family [PF00909.23, score=417.1]} {Dmel: FBgn0038309, Amt, Ammonium transporter, [Score=136, Expect=9e-34]} {Celegans: WBGene00000133, amt-1, Putative ammonium transporter 1, [Score=342, Expect=2e-110]} {RNA1509_18736} {RNA1310_67592} {RNA815_52315}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_19569

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.181	0.993	1.00000	1.00000
RegionR2	1.345	0.993	0.69079	1.00000
RegionR3	2.21	0.993	0.41290	0.93863
RegionR4	0.954	0.993	0.62493	0.93413
RegionR5	0.79	0.993	0.61207	0.96908
RegionR6	-1.126	0.993	0.99898	1.00000
RegionR7	-1.404	0.993	0.99950	1.00000
RegionR8	-1.589	0.993	0.99999	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.058	0.993	1.00000	1.00000
RegenerationR2	2.691	0.993	0.46012	0.85256
RegenerationR3	1.316	0.993	0.80396	0.98360
RegenerationR4	1.595	0.993	0.82906	0.99723
RegenerationR5	1.843	0.993	0.63720	0.92550
RegenerationR6	3.319	0.993	0.34518	0.69067
RegenerationBL	3.501	0.993	0.29893	0.66217
RegenerationTP	0.251	0.993	1.00000	1.00000

Genes with expression patterns similar to MligTC455_19569

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_19569	25	0.52	Mlig455_062568	Neo: - Age: -		4	1.000	-	-	1.000	1.000	1.000	Mlig455_062568 {REF} {Length: 3003} {Pfam: Ammonium Transporter Family [PF00909.23, score=417.1]} {Dmel: FBgn0038309, Amt, Ammonium transporter, [Score=136, Expect=9e-34]} {Celegans: WBGene00000133, amt-1, Putative ammonium transporter 1, [Score=342, Expect=2e-110]} {RNA1509_18736} {RNA1310_67592} {RNA815_52315}
2.	MligTC455_40270	49	1.03	Mlig455_002977	Neo: - Age: Down-Up-Down Region-enriched R2: 7.640/0.00158	AGAP1	1.771	-	-	-	0.797	-	0.974	Mlig455_002977 {REF} {Length: 2591} {Pfam: Ras family [PF00071.24, score=40.1]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=21.9]} {Human: ENSG00000157985, AGAP1, ArfGAP with GTPase domain, ankyrin repeat and PH domain 1, [Score=253, Expect=3e-81]; ENSG00000133612, AGAP3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=243, Expect=2e-77]} {Mouse: ENSMUSG00000055013, Agap1, ArfGAP with GTPase domain, ankyrin repeat and PH domain 1, [Score=253, Expect=2e-77]; ENSMUSG00000023353, Agap3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=243, Expect=2e-77]} {Dmel: FBgn0028509, CenG1A, Centaurin gamma 1A, [Score=251, Expect=7e-76]} {Celegans: WBGene00000566, cnt-2, Arf-GAP with ANK repeat and PH domain-containing protein cnt-2, [Score=205, Expect=2e-59]} {Smed: dd_Smed_v6_4301_0_1, dd_Smed_v6_4301_0_1, [Score=232, Expect=7e-73]} {RNA1509_22773} {RNA1310_2370} {RNA815_11138}
3.	MligTC455_10906	18	0.38	Mlig455_034473	Neo: - Age: -		1.754	-	-	-	0.789	0.965	-	Mlig455_034473 {REF} {Length: 1571} {RNA1509_25022} {RNA1310_121238} {RNA815_3404}
4.	MligTC455_40340	201	4.19	Mlig455_021026, Mlig455_021062	Neo: - Age: -		1.747	-	-	-	0.794	-	0.953	Mlig455_021026 {REF} {Length: 1609} {RNA1310_21018} {RNA815_22069} Mlig455_021062 {REF} {Length: 1582} {RNA1310_21018} {RNA815_22069}
5.	MligTC455_38405	8	0.16	Mlig455_063441	Neo: - Age: -	ANK3	0.969	-	-	-	-	0.969	-	Mlig455_063441 {REF} {Length: 3149} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=38.7]; Ankyrin repeats (many copies) [PF13637.8, score=37.0]; Ankyrin repeats (many copies) [PF13857.8, score=36.4]; Ankyrin repeat [PF13606.8, score=34.5]; Ankyrin repeat [PF00023.32, score=30.9]; Mab-21 protein [PF03281.16, score=28.8]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=55.8, Expect=3e-07]; ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=55.8, Expect=2e-07]; ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=54.3, Expect=7e-07]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=56.6, Expect=9e-08]; ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=56.2, Expect=9e-08]; ENSMUSG00000053580, Tanc2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=54.3, Expect=5e-07]} {Dmel: FBgn0039590, CG10011, [Score=52.0, Expect=2e-06]} {Celegans: WBGene00006882, vab-19, VAB-19, [Score=50.1, Expect=5e-06]} {Smed: dd_Smed_v6_11252_0_1, dd_Smed_v6_11252_0_1, [Score=52.8, Expect=4e-07]} {RNA1509_58343} {RNA1310_5150} {RNA815_34391}
6.	MligTC455_55843	12	0.25	Mlig455_014566	Neo: - Age: - Regeneration-upregulated R2: 4.698 Regeneration-enriched R2: 4.698		0.967	-	-	-	-	0.967	-	Mlig455_014566 {REF} {Length: 2456} {Pfam: C2 domain [PF00168.32, score=30.3]}
7.	MligTC455_41295	203	4.23	Mlig455_007836	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.543		0.964	-	-	-	0.964	-	-	Mlig455_007836 {REF} {Length: 2189} {RNA1509_59262} {RNA1310_31928, RNA1509_59262} {RNA1509_59262, RNA815_32415}
8.	MligTC455_05648	8	0.17	Mlig455_057483	Neo: - Age: -		0.963	-	-	-	-	0.963	-	Mlig455_057483 {REF} {Length: 393} {NoTransDecoderORF} {RNA1310_15033.1} {RNA815_13583}
9.	MligTC455_44701	13	0.28	Mlig455_015346	Neo: - Age: -	LHX5	0.962	-	-	-	-	0.962	-	Mlig455_015346 {REF} {Length: 1954} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=93.9]; Homeodomain [PF00046.31, score=43.3]} {Human: ENSG00000089116, LHX5, LIM homeobox 5, [Score=176, Expect=5e-50]; ENSG00000274577, LHX1, LIM homeobox 1, [Score=169, Expect=2e-47]; ENSG00000273706, LHX1, LIM homeobox 1, [Score=169, Expect=2e-47]} {Mouse: ENSMUSG00000029595, Lhx5, LIM homeobox protein 5, [Score=176, Expect=3e-50]; ENSMUSG00000018698, Lhx1, LIM homeobox protein 1, [Score=168, Expect=2e-47]} {Dmel: FBgn0026411, Lim1, LIM homeobox 1, [Score=256, Expect=4e-80]} {Celegans: WBGene00003000, lin-11, [Score=127, Expect=2e-32]} {Smed: dd_Smed_v6_8252_0_1, dd_Smed_v6_8252_0_1, [Score=152, Expect=3e-42]} {RNA1310_35653} {RNA815_24965}
10.	MligTC455_38054	15	0.31	Mlig455_068611	Neo: - Age: -		0.96	-	-	-	0.960	-	-	Mlig455_068611 {REF} {Length: 2344} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=32.0]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=25.4]} {Smed: dd_Smed_v6_20444_0_1, dd_Smed_v6_20444_0_1, [Score=55.5, Expect=2e-08]} {RNA1310_51734} {RNA815_18074}
11.	MligTC455_01492	21	0.43	Mlig455_051717	Neo: - Age: -		0.959	-	-	-	-	0.959	-	Mlig455_051717 {REF} {Length: 712} {NoTransDecoderORF}
12.	MligTC455_43887	6	0.13	Mlig455_029485, Mlig455_029504	Neo: - Age: -	SGPP1	0.959	-	-	-	-	0.959	-	Mlig455_029485 {REF} {Length: 1598} {TRANSSPLICED} {Pfam: PAP2 superfamily [PF01569.23, score=72.1]; PAP2 superfamily [PF14378.8, score=26.2]} {Human: ENSG00000126821, SGPP1, sphingosine-1-phosphate phosphatase 1, [RH, Score=261, Expect=3e-82]; ENSG00000285281, SGPP1, sphingosine-1-phosphate phosphatase 1, [RH, Score=261, Expect=3e-82]} {Mouse: ENSMUSG00000021054, Sgpp1, sphingosine-1-phosphate phosphatase 1, [RH, Score=273, Expect=5e-87]} {Smed: dd_Smed_v6_4050_0_1, dd_Smed_v6_4050_0_1, [RH, Score=161, Expect=2e-45]} {RNA1509_3032} {RNA1310_2972.1} {RNA815_1921} Mlig455_029504 {REF} {Length: 1564} {TRANSSPLICED} {Pfam: PAP2 superfamily [PF01569.23, score=72.1]; PAP2 superfamily [PF14378.8, score=26.2]} {Human: ENSG00000126821, SGPP1, sphingosine-1-phosphate phosphatase 1, [RH, Score=261, Expect=3e-82]; ENSG00000285281, SGPP1, sphingosine-1-phosphate phosphatase 1, [RH, Score=261, Expect=3e-82]} {Mouse: ENSMUSG00000021054, Sgpp1, sphingosine-1-phosphate phosphatase 1, [RH, Score=273, Expect=5e-87]} {Smed: dd_Smed_v6_4050_0_1, dd_Smed_v6_4050_0_1, [RH, Score=161, Expect=2e-45]} {RNA1509_3032} {RNA1310_2972.1} {RNA815_1921}
13.	MligTC455_54461	21	0.43	Mlig455_026728	Neo: - Age: -		0.959	-	-	-	-	0.959	-	Mlig455_026728 {REF} {Length: 717} {NoTransDecoderORF}
14.	MligTC455_14869	56	1.17	Mlig455_041087	Neo: - Age: -		0.957	-	-	-	0.957	-	-	Mlig455_041087 {REF} {Length: 1408} {RNA1310_35281} {RNA815_59011}
15.	MligTC455_33854	41	0.85	Mlig455_031601	Neo: - Age: - Region-enriched R2: 5.730/0.00808		0.957	-	-	-	0.957	-	-	Mlig455_031601 {REF} {Length: 1072} {RNA1310_42312} {RNA815_56269}
16.	MligTC455_03380	9	0.19	Mlig455_063559	Neo: - Age: -		0.956	-	-	-	-	0.956	-	Mlig455_063559 {REF} {Length: 2763} {RNA1509_28752} {RNA1310_51082} {RNA815_42281.1}
17.	MligTC455_10719	61	1.26	Mlig455_041088	Neo: - Age: -		0.954	-	-	-	0.954	-	-	Mlig455_041088 {REF} {Length: 338} {NoTransDecoderORF} {RNA1310_18998}
18.	MligTC455_12900	29	0.6	Mlig455_027668	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_027668 {REF} {Length: 1792} {NoTransDecoderORF} {RNA1509_41695} {RNA1310_58090} {RNA815_19385}
19.	MligTC455_34319	5	0.1	Mlig455_058865	Neo: - Age: -	MSI2	0.952	-	-	-	-	0.952	-	Mlig455_058865 {REF} {Length: 1158} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.2]; RNA recognition motif [PF16367.7, score=20.0]} {Human: ENSG00000153944, MSI2, musashi RNA binding protein 2, [Score=120, Expect=1e-33]} {Mouse: ENSMUSG00000069769, Msi2, musashi RNA-binding protein 2, [RH, Score=122, Expect=3e-36]} {Dmel: FBgn0260943, Rbp6, RNA-binding protein 6, [Score=120, Expect=7e-34]} {Celegans: WBGene00003423, msi-1, MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1, [Score=119, Expect=2e-33]} {Smed: dd_Smed_v6_8902_0_1, dd_Smed_v6_8902_0_1, [Score=145, Expect=1e-42]} {RNA1509_2174} {RNA1310_73027} {RNA815_1264}
20.	MligTC455_13630	103	2.15	Mlig455_015975, Mlig455_015995	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.335		0.951	-	-	-	-	-	0.951	Mlig455_015975 {REF} {Length: 3240} {tRNA: Val(CAC),pseudo, score=22.4} {RNA1509_22695} {RNA1310_13430.1, RNA1509_22695} {RNA1509_22695, RNA815_19328.1} Mlig455_015995 {REF} {Length: 3774} {tRNA: Val(CAC),pseudo, score=22.4} {Pfam: Autophagy protein 16 (ATG16) [PF08614.13, score=18.9]} {RNA1509_22695} {RNA1310_13430.1} {RNA815_4308.1}