TomoSeq data search

Data search

Results for MligTC455_19617

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_19617

65

1.35

Mlig455_025425

Neo: -

Age: -

CALML3

Mlig455_025425 {REF} {Length: 1452} {Pfam: EF-hand domain pair [PF13499.8, score=61.7]; EF hand [PF00036.34, score=61.0]; EF hand [PF13202.8, score=52.7]; EF-hand domain pair [PF13833.8, score=49.9]; EF-hand domain [PF13405.8, score=48.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=21.6]} {Human: ENSG00000178363, CALML3, calmodulin like 3, [Score=71.2, Expect=5e-16]; ENSG00000198668, CALM1, calmodulin 1, [Score=69.7, Expect=6e-16]; ENSG00000160014, CALM3, calmodulin 3, [Score=69.7, Expect=6e-16]; ENSG00000143933, CALM2, calmodulin 2, [Score=69.7, Expect=2e-15]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=69.7, Expect=1e-15]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=69.7, Expect=4e-16]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=69.7, Expect=1e-15]; ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=67.4, Expect=9e-15]} {Dmel: FBgn0011273, Acam, Androcam, [Score=71.2, Expect=2e-16]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=68.6, Expect=9e-16]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=68.6, Expect=1e-15]} {RNA1509_20139} {RNA1310_66696} {RNA815_4015}

Cumulative graph for MligTC455_19617

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	3.974	1.447	0.07361	0.60128
RegionR2	0.929	1.447	0.32721	0.71925
RegionR3	-1.513	1.447	0.93827	1.00000
RegionR4	1.419	1.447	0.19336	0.47044
RegionR5	0.02	1.447	0.58800	0.94621
RegionR6	-4.524	1.447	1.00000	1.00000
RegionR7	3.29	1.447	0.00338	0.08361
RegionR8	-3.595	1.447	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.718	1.447	0.32442	1.00000
RegenerationR2	1.288	1.447	0.12799	0.55237
RegenerationR3	1.153	1.447	0.37089	0.78436
RegenerationR4	-1.073	1.447	0.35354	0.78276
RegenerationR5	0.398	1.447	0.67400	0.94254
RegenerationR6	4.669	1.447	0.00991	0.12254
RegenerationBL	4.249	1.447	0.00562	0.07086
RegenerationTP	0.001	1.447	0.79928	1.00000

Genes with expression patterns similar to MligTC455_19617

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_19617	65	1.35	Mlig455_025425	Neo: - Age: -	CALML3	5	1.000	1.000	1.000	-	1.000	1.000	Mlig455_025425 {REF} {Length: 1452} {Pfam: EF-hand domain pair [PF13499.8, score=61.7]; EF hand [PF00036.34, score=61.0]; EF hand [PF13202.8, score=52.7]; EF-hand domain pair [PF13833.8, score=49.9]; EF-hand domain [PF13405.8, score=48.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=21.6]} {Human: ENSG00000178363, CALML3, calmodulin like 3, [Score=71.2, Expect=5e-16]; ENSG00000198668, CALM1, calmodulin 1, [Score=69.7, Expect=6e-16]; ENSG00000160014, CALM3, calmodulin 3, [Score=69.7, Expect=6e-16]; ENSG00000143933, CALM2, calmodulin 2, [Score=69.7, Expect=2e-15]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=69.7, Expect=1e-15]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=69.7, Expect=4e-16]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=69.7, Expect=1e-15]; ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=67.4, Expect=9e-15]} {Dmel: FBgn0011273, Acam, Androcam, [Score=71.2, Expect=2e-16]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=68.6, Expect=9e-16]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=68.6, Expect=1e-15]} {RNA1509_20139} {RNA1310_66696} {RNA815_4015}
2.	MligTC455_30890	135	2.81	Mlig455_009602	Neo: - Age: Up-Up-Down		1.674	-	-	0.957	-	-	0.717	Mlig455_009602 {REF} {Length: 8397} {Pfam: Mab-21 protein [PF03281.16, score=41.0]} {RNA1509_48615} {RNA1310_1764.1, RNA1509_48615} {RNA1509_48615, RNA815_2426.1}
3.	MligTC455_52483	36	0.76	Mlig455_042704	Neo: - Age: -		0.973	-	-	0.973	-	-	-	Mlig455_042704 {REF} {Length: 2647} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=149.0]} {Smed: dd_Smed_v6_31771_0_1, dd_Smed_v6_31771_0_1, [Score=71.2, Expect=7e-13]} {RNA1310_47540} {RNA815_16144}
4.	MligTC455_38055	149	3.1	Mlig455_042999	Neo: - Age: -		0.968	-	-	-	-	-	0.968	Mlig455_042999 {REF} {Length: 2994} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=34.7]} {RNA1509_1341} {RNA1310_73219} {RNA815_46869}
5.	MligTC455_48019	15	0.32	Mlig455_031400	Neo: - Age: -		0.966	-	-	0.966	-	-	-	Mlig455_031400 {REF} {Length: 893} {NoTransDecoderORF} {RNA1310_54309}
6.	MligTC455_50243	72	1.5	Mlig455_009235	Neo: - Age: logFC(26M/2M)=0.831 Regeneration-enriched R3: 6.442 Regeneration-enriched R4: 4.893		0.963	-	-	-	-	-	0.963	Mlig455_009235 {REF} {Length: 2677} {NoTransDecoderORF} {RNA1509_36086} {RNA1310_11581.1} {RNA815_17657}
7.	MligTC455_26207	143	2.97	Mlig455_049857	Neo: - Age: -		0.961	-	-	-	-	-	0.961	Mlig455_049857 {REF} {Length: 4745} {Pfam: P21-Rho-binding domain [PF00786.30, score=31.2]} {RNA1509_9659} {RNA1310_11243.1} {RNA815_9336}
8.	MligTC455_20366	315	6.57	Mlig455_016461, Mlig455_016527, Mlig455_049812	Neo: - Age: -		0.96	-	-	-	-	-	0.960	Mlig455_016461 {REF} {Length: 3503} {RNA1509_38265} {RNA1310_8609} {RNA815_9870} Mlig455_016527 {REF} {Length: 3465} {RNA1509_38265} {RNA1310_8609} {RNA815_9870} Mlig455_049812 {REF} {Length: 3193} {RNA1509_38265} {RNA1310_8609} {RNA815_9870}
9.	MligTC455_26735	132	2.75	Mlig455_062257	Neo: - Age: Down-Up-Up	PGR	0.958	-	-	-	-	0.958	-	Mlig455_062257 {REF} {Length: 2391} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=68.5]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=63.4]} {Human: ENSG00000082175, PGR, progesterone receptor, [Score=107, Expect=4e-24]; ENSG00000113580, NR3C1, nuclear receptor subfamily 3 group C member 1, [Score=107, Expect=2e-24]; ENSG00000119715, ESRRB, estrogen related receptor beta, [Score=102, Expect=3e-23]} {Mouse: ENSMUSG00000031870, Pgr, progesterone receptor, [Score=111, Expect=7e-26]; ENSMUSG00000024431, Nr3c1, nuclear receptor subfamily 3, group C, member 1, [Score=110, Expect=2e-25]} {Dmel: FBgn0035849, ERR, estrogen-related receptor, [Score=102, Expect=2e-23]} {Celegans: WBGene00003622, nhr-23, Nuclear hormone receptor family member nhr-23, [Score=82.4, Expect=8e-17]} {Smed: dd_Smed_v6_10427_0_1, dd_Smed_v6_10427_0_1, [Score=85.5, Expect=9e-18]} {RNA1509_24832} {RNA1310_23073.1} {RNA815_12901}
10.	MligTC455_43954	180	3.75	Mlig455_052583, Mlig455_052596	Neo: Irradiation Age: -		0.954	-	-	0.954	-	-	-	Mlig455_052583 {REF} {Length: 2001} {TRANSSPLICED} {RNA1509_34415} {RNA1310_26609.1, RNA1509_34415} {RNA1509_34415, RNA815_19301} Mlig455_052596 {REF} {Length: 2140} {TRANSSPLICED} {RNA1509_34415, RNA1509_57175} {RNA1310_25763, RNA1509_57175} {RNA1509_57175, RNA815_19301}
11.	MligTC455_07309	57	1.19	Mlig455_059977	Neo: - Age: -		0.953	-	-	0.953	-	-	-	Mlig455_059977 {REF} {Length: 378} {RNA1310_21321} {RNA815_8534}
12.	MligTC455_36377	39	0.82	Mlig455_032339	Neo: - Age: -		0.953	-	-	0.953	-	-	-	Mlig455_032339 {REF} {Length: 2133} {Dmel: FBgn0038397, CG10185, [Score=82.0, Expect=8e-16]} {Celegans: WBGene00020254, T05C3.2, [Score=114, Expect=6e-26]}
13.	MligTC455_20370	41	0.85	Mlig455_046379	Neo: - Age: Down-Up-Down		0.95	-	-	-	-	-	0.950	Mlig455_046379 {REF} {Length: 1870} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=27.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.6]; Retroviral aspartyl protease [PF00077.22, score=19.6]; Family of unknown function (DUF5537) [PF17690.3, score=19.3]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=76.3, Expect=3e-14]} {RNA1509_51609} {RNA1310_24791} {RNA815_28268}
14.	MligTC455_21555	70	1.46	Mlig455_014351	Neo: - Age: -		0.95	-	-	-	-	-	0.950	Mlig455_014351 {REF} {Length: 4507} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=69.9]} {RNA1509_41009} {RNA1310_68932} {RNA815_36459}

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