M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_20187

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_20187 463 9.65 Mlig455_056883

Neo: -

Age: -

 RNF145 Mlig455_056883 {REF} {Length: 4885} {Pfam: TRC8 N-terminal domain [PF13705.8, score=210.4]; Ring finger domain [PF13639.8, score=32.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=28.7]; RING-H2 zinc finger domain [PF12678.9, score=26.6]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.0]} {Human: ENSG00000145860, RNF145, ring finger protein 145, [RH, Score=248, Expect=1e-71]} {Mouse: ENSMUSG00000019189, Rnf145, ring finger protein 145, [RH, Score=248, Expect=1e-71]} {Dmel: FBgn0039668, Trc8, TRC8 ring finger protein, [Score=145, Expect=1e-35]} {Celegans: WBGene00022471, Y119C1B.5, [RH, Score=176, Expect=5e-46]} {Smed: dd_Smed_v6_5260_0_1, dd_Smed_v6_5260_0_1, [RH, Score=182, Expect=4e-48]} {RNA1509_19930} {RNA1310_7935} {RNA815_7247}

Cumulative graph for MligTC455_20187

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.936 3.637 0.32419 0.97293
RegionR2 -0.038 3.637 0.93613 1.00000
RegionR3 0.095 3.637 0.78839 1.00000
RegionR4 0.249 3.637 0.57482 0.89218
RegionR5 0.477 3.637 0.13333 0.37238
RegionR6 0.339 3.637 0.36029 0.94314
RegionR7 -1.11 3.637 0.05024 0.43103
RegionR8 -0.948 3.637 0.15175 0.70587

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.9 3.637 0.08111 0.77706
RegenerationR2 0.435 3.637 0.28255 0.72612
RegenerationR3 -0.019 3.637 0.96248 1.00000
RegenerationR4 -0.012 3.637 0.98000 1.00000
RegenerationR5 0.048 3.637 0.89872 1.00000
RegenerationR6 -0.183 3.637 0.70102 0.92479
RegenerationBL -1.173 3.637 0.19468 0.53065
RegenerationTP 0.99 3.637 0.13238 0.54683


Genes with expression patterns similar to MligTC455_20187

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_20187 463 9.65 Mlig455_056883

Neo: -

Age: -

 RNF145 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_056883 {REF} {Length: 4885} {Pfam: TRC8 N-terminal domain [PF13705.8, score=210.4]; Ring finger domain [PF13639.8, score=32.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=28.7]; RING-H2 zinc finger domain [PF12678.9, score=26.6]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.0]} {Human: ENSG00000145860, RNF145, ring finger protein 145, [RH, Score=248, Expect=1e-71]} {Mouse: ENSMUSG00000019189, Rnf145, ring finger protein 145, [RH, Score=248, Expect=1e-71]} {Dmel: FBgn0039668, Trc8, TRC8 ring finger protein, [Score=145, Expect=1e-35]} {Celegans: WBGene00022471, Y119C1B.5, [RH, Score=176, Expect=5e-46]} {Smed: dd_Smed_v6_5260_0_1, dd_Smed_v6_5260_0_1, [RH, Score=182, Expect=4e-48]} {RNA1509_19930} {RNA1310_7935} {RNA815_7247}
2. MligTC455_21349 1011 21.07 Mlig455_066773

Neo: -

Age: Down-Up-Down

 GNPNAT1 1.702 - 0.741 - - - 0.961 Mlig455_066773 {REF} {Length: 1286} {TRANSSPLICED} {Pfam: Acetyltransferase (GNAT) family [PF00583.27, score=49.1]; Acetyltransferase (GNAT) domain [PF13673.9, score=34.9]; Acetyltransferase (GNAT) domain [PF13508.9, score=29.7]} {Human: ENSG00000100522, GNPNAT1, glucosamine-phosphate N-acetyltransferase 1, [Score=114, Expect=8e-32]} {Mouse: ENSMUSG00000037722, Gnpnat1, glucosamine-phosphate N-acetyltransferase 1, [Score=109, Expect=8e-30]} {Dmel: FBgn0039690, CG1969, [Score=142, Expect=3e-42]} {Celegans: WBGene00001646, gna-1, Glucosamine 6-phosphate N-acetyltransferase, [Score=124, Expect=5e-36]} {Smed: dd_Smed_v6_7188_0_1, dd_Smed_v6_7188_0_1, [Score=111, Expect=1e-29]} {RNA1509_15264} {RNA1310_26288} {RNA815_11358}
3. MligTC455_51379 596 12.42 Mlig455_024811, Mlig455_024889

Neo: -

Age: -

 NSD1 0.981 - - 0.981 - - -

Mlig455_024811 {REF} {Length: 5240} {TRANSSPLICED} {Pfam: SET domain [PF00856.30, score=71.4]; AWS domain [PF17907.3, score=45.9]; PWWP domain [PF00855.19, score=32.7]; NSD Cys-His rich domain [PF17982.3, score=31.0]; PHD-finger [PF00628.31, score=24.1]} {Human: ENSG00000165671, NSD1, nuclear receptor binding SET domain protein 1, [Score=363, Expect=2e-104]; ENSG00000109685, NSD2, nuclear receptor binding SET domain protein 2, [Score=358, Expect=5e-104]} {Mouse: ENSMUSG00000021488, Nsd1, nuclear receptor-binding SET-domain protein 1, [Score=368, Expect=5e-106]; ENSMUSG00000057406, Nsd2, nuclear receptor binding SET domain protein 2, [Score=360, Expect=4e-105]} {Dmel: FBgn0039559, NSD, Nuclear receptor binding SET domain protein, [Score=267, Expect=3e-73]} {Celegans: WBGene00016603, met-1, Histone-lysine N-methyltransferase, [Score=140, Expect=2e-33]} {Smed: dd_Smed_v6_4755_0_2, dd_Smed_v6_4755_0_2, [Score=363, Expect=1e-111]} {RNA1509_17963, RNA1509_58106} {RNA1310_9142, RNA1509_58106} {RNA1509_58106, RNA815_33437}

Mlig455_024889 {REF} {Length: 5173} {TRANSSPLICED} {Pfam: SET domain [PF00856.30, score=71.3]; AWS domain [PF17907.3, score=45.9]; PWWP domain [PF00855.19, score=32.8]; NSD Cys-His rich domain [PF17982.3, score=31.0]; PHD-finger [PF00628.31, score=24.1]} {Human: ENSG00000165671, NSD1, nuclear receptor binding SET domain protein 1, [Score=363, Expect=3e-104]; ENSG00000109685, NSD2, nuclear receptor binding SET domain protein 2, [Score=358, Expect=6e-104]} {Mouse: ENSMUSG00000021488, Nsd1, nuclear receptor-binding SET-domain protein 1, [Score=367, Expect=9e-106]; ENSMUSG00000057406, Nsd2, nuclear receptor binding SET domain protein 2, [Score=360, Expect=6e-105]} {Dmel: FBgn0039559, NSD, Nuclear receptor binding SET domain protein, [Score=267, Expect=2e-73]} {Celegans: WBGene00016603, met-1, Histone-lysine N-methyltransferase, [Score=140, Expect=2e-33]} {Smed: dd_Smed_v6_4755_0_2, dd_Smed_v6_4755_0_2, [Score=363, Expect=2e-111]} {RNA1509_17963} {RNA1310_9142, RNA1509_17963} {RNA1509_17963, RNA815_33437}
4. MligTC455_20326 1699 35.39 Mlig455_001808, Mlig455_001834, Mlig455_062226, Mlig455_062235

Neo: -

Age: -

 LRSAM1 0.976 - - - 0.976 - -

Mlig455_001808 {REF} {Length: 5540} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=61.8]; Leucine Rich repeats (2 copies) [PF12799.9, score=50.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=40.3]} {Human: ENSG00000148356, LRSAM1, leucine rich repeat and sterile alpha motif containing 1, [RH, Score=314, Expect=1e-95]} {Mouse: ENSMUSG00000026792, Lrsam1, leucine rich repeat and sterile alpha motif containing 1, [RH, Score=319, Expect=1e-97]} {Dmel: FBgn0263289, scrib, scribbled, [Score=74.7, Expect=2e-13]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=62.8, Expect=7e-10]} {Smed: dd_Smed_v6_10841_0_1, dd_Smed_v6_10841_0_1, [RH, Score=279, Expect=2e-83]} {RNA1509_47815, RNA1509_6598} {RNA1310_6561.1, RNA1509_47815} {RNA1509_47815, RNA815_11379}

Mlig455_001834 {REF} {Length: 5244} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=61.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=48.8]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=40.3]} {Human: ENSG00000148356, LRSAM1, leucine rich repeat and sterile alpha motif containing 1, [RH, Score=314, Expect=1e-95]} {Mouse: ENSMUSG00000026792, Lrsam1, leucine rich repeat and sterile alpha motif containing 1, [RH, Score=320, Expect=3e-98]} {Dmel: FBgn0263289, scrib, scribbled, [Score=73.9, Expect=5e-13]} {Celegans: WBGene00021533, Y42G9A.3, [Score=60.5, Expect=2e-09]} {Smed: dd_Smed_v6_10841_0_1, dd_Smed_v6_10841_0_1, [RH, Score=275, Expect=3e-82]} {RNA1509_14328, RNA1509_46379, RNA1509_6598} {RNA1310_6561.1, RNA1509_14328, RNA1509_46379} {RNA1509_14328, RNA1509_46379, RNA815_11379}

Mlig455_062226 {REF} {Length: 4716} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=61.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=48.8]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=40.3]} {Human: ENSG00000148356, LRSAM1, leucine rich repeat and sterile alpha motif containing 1, [RH, Score=314, Expect=1e-95]} {Mouse: ENSMUSG00000026792, Lrsam1, leucine rich repeat and sterile alpha motif containing 1, [RH, Score=320, Expect=4e-98]} {Dmel: FBgn0263289, scrib, scribbled, [Score=73.9, Expect=5e-13]} {Celegans: WBGene00021533, Y42G9A.3, [Score=60.5, Expect=2e-09]} {Smed: dd_Smed_v6_10841_0_1, dd_Smed_v6_10841_0_1, [RH, Score=275, Expect=3e-82]} {RNA1509_43339, RNA1509_55966, RNA1509_6598} {RNA1310_6561.1, RNA1509_43339, RNA1509_55966} {RNA1509_43339, RNA1509_55966, RNA815_11379}

Mlig455_062235 {REF} {Length: 4895} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=61.8]; Leucine Rich repeats (2 copies) [PF12799.9, score=49.0]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=40.3]} {Human: ENSG00000148356, LRSAM1, leucine rich repeat and sterile alpha motif containing 1, [RH, Score=305, Expect=1e-92]} {Mouse: ENSMUSG00000026792, Lrsam1, leucine rich repeat and sterile alpha motif containing 1, [RH, Score=317, Expect=4e-97]} {Dmel: FBgn0263289, scrib, scribbled, [Score=73.6, Expect=5e-13]} {Celegans: WBGene00021533, Y42G9A.3, [Score=60.8, Expect=1e-09]} {Smed: dd_Smed_v6_10841_0_1, dd_Smed_v6_10841_0_1, [RH, Score=275, Expect=2e-82]} {RNA1509_14328, RNA1509_45737, RNA1509_54122} {RNA1310_6561.1, RNA1509_45737, RNA1509_54122} {RNA1509_45737, RNA1509_54122, RNA815_11379}
5. MligTC455_33949 219 4.56 Mlig455_030087, Mlig455_043225

Neo: -

Age: Down-Down-Down

 THAP9 0.961 - - 0.961 - - -

Mlig455_030087 {REF} {Length: 5685} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=117.4]; Transposase protein [PF12017.10, score=28.9]} {Human: ENSG00000168152, THAP9, THAP domain containing 9, [Score=212, Expect=5e-56]} {RNA1509_45496} {RNA1310_1582} {RNA815_252.1}

Mlig455_043225 {REF} {Length: 3516} {RNA1509_29843} {RNA1310_14922.1} {RNA815_27718}
6. MligTC455_31017 825 17.18 Mlig455_053510

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 2.081

Region-enriched R4: 1.924/0.00000

Regeneration-downregulated R4: -1.701

Regeneration-depleted R4: -1.701

 GOLGA3 0.955 - - - - - 0.955 Mlig455_053510 {REF} {Length: 4752} {TRANSSPLICED} {Human: ENSG00000090615, GOLGA3, golgin A3, [RH, Score=107, Expect=9e-23]} {Mouse: ENSMUSG00000029502, Golga3, golgi autoantigen, golgin subfamily a, 3, [RH, Score=105, Expect=3e-22]} {Smed: dd_Smed_v6_7928_0_1, dd_Smed_v6_7928_0_1, [Score=94.0, Expect=3e-19]} {RNA1509_4848} {RNA1310_1473, RNA1509_4848} {RNA1509_4848, RNA815_781.1}
7. MligTC455_16348 398 8.29 Mlig455_024441

Neo: -

Age: -

Region-enriched R6: 2.025/0.04475

 SH3KBP1 0.95 - - 0.950 - - - Mlig455_024441 {REF} {Length: 2487} {TRANSSPLICED} {Pfam: Variant SH3 domain [PF14604.8, score=110.0]; Variant SH3 domain [PF07653.19, score=84.7]; SH3 domain [PF00018.30, score=84.0]} {Human: ENSG00000147010, SH3KBP1, SH3 domain containing kinase binding protein 1, [RH, Score=93.6, Expect=8e-20]} {Mouse: ENSMUSG00000040990, Sh3kbp1, SH3-domain kinase binding protein 1, [RH, Score=91.7, Expect=2e-19]} {Dmel: FBgn0027598, cindr, CIN85 and CD2AP related, [RH, Score=77.0, Expect=8e-15]} {Celegans: WBGene00021549, Y44E3A.4, [RH, Score=70.5, Expect=8e-13]} {Smed: dd_Smed_v6_1522_0_1, dd_Smed_v6_1522_0_1, [RH, Score=140, Expect=1e-36]} {RNA1509_22359} {RNA1310_6834} {RNA815_22315}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA