M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_20276

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_20276 188 3.92 Mlig455_015823, Mlig455_043144, Mlig455_053214

Neo: -

Age: -

Mlig455_015823 {REF} {Length: 1339} {RNA1509_45539} {RNA1310_32376.2} {RNA815_29511.1}

Mlig455_043144 {REF} {Length: 2521} {TRANSSPLICED} {RNA1509_16686} {RNA1310_16986, RNA1509_16686} {RNA1509_16686, RNA815_5991}

Mlig455_053214 {REF} {Length: 167} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_32376.2} {RNA815_45036}

Cumulative graph for MligTC455_20276

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.334 2.605 0.26396 0.91381
RegionR2 1.661 2.605 0.18207 0.53305
RegionR3 0.595 2.605 0.58115 1.00000
RegionR4 0.499 2.605 0.66435 0.96265
RegionR5 1.16 2.605 0.23982 0.55114
RegionR6 0.716 2.605 0.51161 1.00000
RegionR7 -0.095 2.605 0.89119 1.00000
RegionR8 0.797 2.605 0.57651 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.709 2.605 0.16758 0.91014
RegenerationR2 0.431 2.605 0.58659 0.90921
RegenerationR3 0.898 2.605 0.34689 0.76922
RegenerationR4 0.601 2.605 0.53663 0.88674
RegenerationR5 0.136 2.605 0.86839 1.00000
RegenerationR6 -0.006 2.605 0.99153 1.00000
RegenerationBL 1.233 2.605 0.23138 0.58275
RegenerationTP 1.639 2.605 0.13975 0.55809


Genes with expression patterns similar to MligTC455_20276

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_20276 188 3.92 Mlig455_015823, Mlig455_043144, Mlig455_053214

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_015823 {REF} {Length: 1339} {RNA1509_45539} {RNA1310_32376.2} {RNA815_29511.1}

Mlig455_043144 {REF} {Length: 2521} {TRANSSPLICED} {RNA1509_16686} {RNA1310_16986, RNA1509_16686} {RNA1509_16686, RNA815_5991}

Mlig455_053214 {REF} {Length: 167} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_32376.2} {RNA815_45036}
2. MligTC455_22174 107 2.24 Mlig455_035328

Neo: -

Age: logFC(26M/2M)=-0.830

 1.668 - - 0.950 0.718 - - Mlig455_035328 {REF} {Length: 1563} {Pfam: Methyltransferase FkbM domain [PF05050.14, score=18.7]} {Smed: dd_Smed_v6_12148_0_2, dd_Smed_v6_12148_0_2, [Score=66.2, Expect=9e-13]} {RNA1310_20880} {RNA815_24398}
3. MligTC455_12915 62 1.3 Mlig455_008344

Neo: -

Age: -

 0.964 - - - 0.964 - - Mlig455_008344 {REF} {Length: 1389} {NoTransDecoderORF} {RNA1509_15367, RNA1509_22746} {RNA1310_38012, RNA1509_22746} {RNA1509_22746, RNA815_26892}
4. MligTC455_13555 95 1.97 Mlig455_019079

Neo: Int S/G2/M

Age: -

 COA7 0.96 0.960 - - - - - Mlig455_019079 {REF} {Length: 1418} {Pfam: Sel1 repeat [PF08238.14, score=23.3]} {Human: ENSG00000162377, COA7, cytochrome c oxidase assembly factor 7 (putative), [Score=48.9, Expect=2e-06]} {Mouse: ENSMUSG00000048351, Coa7, cytochrome c oxidase assembly factor 7, [Score=46.6, Expect=1e-05]} {Dmel: FBgn0039965, CG13865, [RH, Score=66.2, Expect=2e-12]} {RNA1509_45906} {RNA1310_37650.1} {RNA815_47606}
5. MligTC455_41249 61 1.27 Mlig455_010465

Neo: -

Age: Down-Down-Up

 0.959 - - - 0.959 - - Mlig455_010465 {REF} {Length: 2724} {RNA1310_39237} {RNA815_40339}
6. MligTC455_09307 8 0.16 Mlig455_043212

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_043212 {REF} {Length: 373} {Pfam: NHL repeat [PF01436.23, score=23.2]} {RNA1509_15622} {RNA1310_37306} {RNA815_3900.8}
7. MligTC455_45043 50 1.05 Mlig455_015382

Neo: Int S/G2/M

Age: -

 FANCI 0.956 0.956 - - - - - Mlig455_015382 {REF} {Length: 5579} {TRANSSPLICED} {Pfam: FANCI solenoid 4 [PF14678.8, score=99.8]; FANCI solenoid 2 [PF14676.8, score=87.0]; FANCI helical domain 2 [PF14680.8, score=79.4]; FANCI solenoid 1 [PF14675.8, score=68.0]; FANCI helical domain 1 [PF14679.8, score=26.8]} {Human: ENSG00000140525, FANCI, FA complementation group I, [RH, Score=169, Expect=8e-42]} {Mouse: ENSMUSG00000039187, Fanci, Fanconi anemia, complementation group I, [RH, Score=190, Expect=3e-48]} {Smed: dd_Smed_v6_8024_0_1, dd_Smed_v6_8024_0_1, [Score=60.1, Expect=1e-08]} {RNA1509_14043, RNA1509_46132} {RNA1310_3141, RNA1509_14043, RNA1509_46132} {RNA1509_14043, RNA1509_46132, RNA815_12076}
8. MligTC455_40229 55 1.14 Mlig455_013426, Mlig455_020315, Mlig455_051851

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.817

 0.952 - - 0.952 - - -

Mlig455_013426 {REF} {Length: 2790} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=33.5]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=76.3, Expect=2e-17]} {RNA1509_56234} {RNA1310_4326.1} {RNA815_14392}

Mlig455_020315 {REF} {Length: 4608} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=107.3]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=104.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=65.3]; Integrase zinc binding domain [PF17921.3, score=61.0]; Integrase core domain [PF00665.28, score=52.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.3]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=79.7, Expect=2e-14]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=79.7, Expect=2e-14]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=291, Expect=8e-82]} {RNA1509_56234} {RNA1310_4313.1, RNA1509_56234} {RNA1509_56234, RNA815_14392}

Mlig455_051851 {REF} {Length: 1788} {Pfam: Integrase zinc binding domain [PF17921.3, score=61.9]; Integrase core domain [PF00665.28, score=55.2]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=55.1, Expect=2e-07]} {Smed: dd_Smed_v6_28750_0_1, dd_Smed_v6_28750_0_1, [Score=62.4, Expect=9e-12]} {RNA1509_56234} {RNA1310_4313.1} {RNA815_29579}
9. MligTC455_38257 159 3.31 Mlig455_012808, Mlig455_047421, Mlig455_070483

Neo: -

Age: -

 0.95 0.950 - - - - -

Mlig455_012808 {REF} {Length: 4065} {RNA1310_64880}

Mlig455_047421 {REF} {Length: 6870} {RNA1509_15668} {RNA1310_64880} {RNA815_39775}

Mlig455_070483 {REF} {Length: 3618} {RNA1310_64880}
10. MligTC455_42085 234 4.88 Mlig455_003456

Neo: -

Age: -

 KIRREL1 0.95 0.950 - - - - - Mlig455_003456 {REF} {Length: 3845} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF13927.8, score=111.2]; Immunoglobulin I-set domain [PF07679.18, score=85.2]; Immunoglobulin domain [PF13895.8, score=72.1]; Immunoglobulin domain [PF00047.27, score=68.2]; Immunoglobulin V-set domain [PF07686.19, score=40.7]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=26.0]} {Human: ENSG00000183853, KIRREL1, kirre like nephrin family adhesion molecule 1, [RH, Score=117, Expect=2e-26]; ENSG00000149571, KIRREL3, kirre like nephrin family adhesion molecule 3, [RH, Score=115, Expect=1e-25]} {Mouse: ENSMUSG00000032036, Kirrel3, kirre like nephrin family adhesion molecule 3, [RH, Score=117, Expect=2e-26]; ENSMUSG00000041734, Kirrel, kirre like nephrin family adhesion molecule 1, [RH, Score=116, Expect=5e-26]} {Dmel: FBgn0085420, DIP-delta, Dpr-interacting protein delta, [Score=60.8, Expect=3e-09]} {Celegans: WBGene00006365, syg-1, Synaptogenesis protein syg-1, [RH, Score=99.8, Expect=3e-21]} {Smed: dd_Smed_v6_12118_0_1, dd_Smed_v6_12118_0_1, [RH, Score=226, Expect=8e-62]} {RNA1509_42885} {RNA1310_3333, RNA1509_42885} {RNA1509_42885, RNA815_3466}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA