TomoSeq data search

Data search

Results for MligTC455_20342

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_20342

1194

24.88

Mlig455_029911

Neo: -

Age: -

BEST3

Mlig455_029911 {REF} {Length: 3751} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=136.1]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=116, Expect=4e-28]; ENSG00000039987, BEST2, bestrophin 2, [Score=113, Expect=3e-26]} {Mouse: ENSMUSG00000052819, Best2, bestrophin 2, [Score=113, Expect=2e-26]; ENSMUSG00000020169, Best3, bestrophin 3, [Score=111, Expect=1e-25]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=150, Expect=9e-39]} {Celegans: WBGene00021368, best-20, Bestrophin homolog, [Score=110, Expect=5e-26]} {Smed: dd_Smed_v6_1844_0_1, dd_Smed_v6_1844_0_1, [Score=246, Expect=5e-77]} {RNA1509_44647} {RNA1310_2310} {RNA815_10823}

Cumulative graph for MligTC455_20342

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.031	4.75	0.17085	0.79607
RegionR2	0.654	4.75	0.06445	0.30725
RegionR3	-0.344	4.75	0.28098	0.82418
RegionR4	-0.629	4.75	0.06440	0.22864
RegionR5	0.701	4.75	0.00774	0.04797
RegionR6	0.096	4.75	0.75755	1.00000
RegionR7	0.182	4.75	0.62742	1.00000
RegionR8	0.371	4.75	0.39747	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.913	4.75	0.18477	0.92543
RegenerationR2	0.412	4.75	0.15862	0.59520
RegenerationR3	0.228	4.75	0.51879	0.86602
RegenerationR4	-0.227	4.75	0.51925	0.87893
RegenerationR5	-0.325	4.75	0.29139	0.71925
RegenerationR6	-0.657	4.75	0.07381	0.33941
RegenerationBL	-0.2	4.75	0.60012	0.94712
RegenerationTP	0.274	4.75	0.48358	0.89092

Genes with expression patterns similar to MligTC455_20342

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_20342	1194	24.88	Mlig455_029911	Neo: - Age: -	BEST3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_029911 {REF} {Length: 3751} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=136.1]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=116, Expect=4e-28]; ENSG00000039987, BEST2, bestrophin 2, [Score=113, Expect=3e-26]} {Mouse: ENSMUSG00000052819, Best2, bestrophin 2, [Score=113, Expect=2e-26]; ENSMUSG00000020169, Best3, bestrophin 3, [Score=111, Expect=1e-25]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=150, Expect=9e-39]} {Celegans: WBGene00021368, best-20, Bestrophin homolog, [Score=110, Expect=5e-26]} {Smed: dd_Smed_v6_1844_0_1, dd_Smed_v6_1844_0_1, [Score=246, Expect=5e-77]} {RNA1509_44647} {RNA1310_2310} {RNA815_10823}
2.	MligTC455_10416	765	15.93	Mlig455_008958	Neo: - Age: - Region-enriched R8: 1.474/0.04842		2.493	-	-	0.838	0.955	0.700	-	Mlig455_008958 {REF} {Length: 515} {NoTransDecoderORF} {RNA1310_120997} {RNA815_53530}
3.	MligTC455_39859	143	2.97	Mlig455_052229	Neo: - Age: -	NECAB1	1.72	-	-	-	0.952	0.768	-	Mlig455_052229 {REF} {Length: 1726} {Pfam: EF-hand domain [PF13405.8, score=34.7]; EF hand [PF00036.34, score=33.1]; EF-hand domain pair [PF13499.8, score=27.6]; EF-hand domain pair [PF13833.8, score=27.4]; Antibiotic biosynthesis monooxygenase [PF03992.18, score=25.5]; EF hand [PF13202.8, score=23.2]} {Human: ENSG00000123119, NECAB1, N-terminal EF-hand calcium binding protein 1, [Score=187, Expect=1e-55]} {Mouse: ENSMUSG00000040536, Necab1, N-terminal EF-hand calcium binding protein 1, [Score=182, Expect=1e-53]} {RNA1310_5770} {RNA815_27367}
4.	MligTC455_32937	681	14.18	Mlig455_039443	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.822		1.66	-	-	0.959	-	0.701	-	Mlig455_039443 {REF} {Length: 1676} {RNA1509_14386} {RNA1310_21532, RNA1509_14386} {RNA1509_14386, RNA815_8850}
5.	MligTC455_50361	844	17.58	Mlig455_000622	Neo: - Age: Down-Up-Down	DUSP22	0.966	-	-	0.966	-	-	-	Mlig455_000622 {REF} {Length: 2298} {TRANSSPLICED} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=89.4]} {Human: ENSG00000112679, DUSP22, dual specificity phosphatase 22, [RH, Score=119, Expect=1e-32]} {Mouse: ENSMUSG00000069255, Dusp22, dual specificity phosphatase 22, [RH, Score=120, Expect=3e-33]} {Dmel: FBgn0036369, CG10089, [RH, Score=103, Expect=6e-25]} {Celegans: WBGene00006923, vhp-1, Tyrosine-protein phosphatase vhp-1, [Score=86.3, Expect=6e-19]} {Smed: dd_Smed_v6_4044_0_1, dd_Smed_v6_4044_0_1, [RH, Score=110, Expect=1e-28]} {RNA1509_21493, RNA1509_48380} {RNA1310_34562, RNA1509_21493, RNA1509_48380} {RNA1509_21493, RNA1509_48380, RNA815_16504}
6.	MligTC455_42739	834	17.37	Mlig455_016450, Mlig455_049823	Neo: - Age: Down-Up-Down		0.963	-	-	-	0.963	-	-	Mlig455_016450 {REF} {Length: 661} {TRANSSPLICED} {RNA1509_48345} {RNA1310_46154.2, RNA1509_48345} {RNA1509_48345, RNA815_24742.1} Mlig455_049823 {REF} {Length: 663} {TRANSSPLICED} {RNA1509_48345} {RNA1310_46154.2} {RNA815_24742.1}
7.	MligTC455_20869	354	7.38	Mlig455_048463	Neo: - Age: -	SARAF	0.956	-	-	-	0.956	-	-	Mlig455_048463 {REF} {Length: 3486} {Pfam: SOCE-associated regulatory factor of calcium homoeostasis [PF06682.14, score=201.6]} {Human: ENSG00000133872, SARAF, store-operated calcium entry associated regulatory factor, [Score=136, Expect=2e-37]} {Mouse: ENSMUSG00000031532, Saraf, store-operated calcium entry-associated regulatory factor, [Score=126, Expect=1e-33]} {Celegans: WBGene00011529, T06D8.9, [Score=122, Expect=1e-32]} {Smed: dd_Smed_v6_809_0_1, dd_Smed_v6_809_0_1, [Score=154, Expect=2e-45]} {RNA1509_37606} {RNA1310_29107} {RNA815_13291}
8.	MligTC455_40768	386	8.04	Mlig455_053989	Neo: - Age: Down-Down-Up		0.954	-	-	-	-	0.954	-	Mlig455_053989 {REF} {Length: 1232} {TRANSSPLICED} {Pfam: zinc-RING finger domain [PF14634.8, score=20.4]} {RNA1509_39917} {RNA1310_28122, RNA1509_39917}
9.	MligTC455_40128	390	8.12	Mlig455_054771, Mlig455_054798	Neo: - Age: -		0.95	-	-	-	0.950	-	-	Mlig455_054771 {REF} {Length: 2531} {RNA1509_55498} {RNA1310_44145} {RNA815_38949} Mlig455_054798 {REF} {Length: 2333} {RNA1509_55498} {RNA1310_44145} {RNA815_38949}

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