TomoSeq data search

Data search

Results for MligTC455_39859

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_39859

143

2.97

Mlig455_052229

Neo: -

Age: -

NECAB1

Mlig455_052229 {REF} {Length: 1726} {Pfam: EF-hand domain [PF13405.8, score=34.7]; EF hand [PF00036.34, score=33.1]; EF-hand domain pair [PF13499.8, score=27.6]; EF-hand domain pair [PF13833.8, score=27.4]; Antibiotic biosynthesis monooxygenase [PF03992.18, score=25.5]; EF hand [PF13202.8, score=23.2]} {Human: ENSG00000123119, NECAB1, N-terminal EF-hand calcium binding protein 1, [Score=187, Expect=1e-55]} {Mouse: ENSMUSG00000040536, Necab1, N-terminal EF-hand calcium binding protein 1, [Score=182, Expect=1e-53]} {RNA1310_5770} {RNA815_27367}

Cumulative graph for MligTC455_39859

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.087	2.049	0.28407	0.93555
RegionR2	2.307	2.049	0.01391	0.12371
RegionR3	0.079	2.049	0.83345	1.00000
RegionR4	-0.262	2.049	0.92228	1.00000
RegionR5	-0.46	2.049	0.95562	1.00000
RegionR6	1.409	2.049	0.12440	0.64233
RegionR7	-0.362	2.049	0.94423	1.00000
RegionR8	2.376	2.049	0.05797	0.47095

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.142	2.049	0.99996	1.00000
RegenerationR2	0.015	2.049	0.98849	1.00000
RegenerationR3	0.513	2.049	0.51657	0.86481
RegenerationR4	-0.672	2.049	0.38843	0.80645
RegenerationR5	-1.078	2.049	0.21643	0.65115
RegenerationR6	-0.99	2.049	0.18781	0.52478
RegenerationBL	0.36	2.049	0.68984	1.00000
RegenerationTP	1.419	2.049	0.12575	0.53618

Genes with expression patterns similar to MligTC455_39859

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_39859	143	2.97	Mlig455_052229	Neo: - Age: -	NECAB1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_052229 {REF} {Length: 1726} {Pfam: EF-hand domain [PF13405.8, score=34.7]; EF hand [PF00036.34, score=33.1]; EF-hand domain pair [PF13499.8, score=27.6]; EF-hand domain pair [PF13833.8, score=27.4]; Antibiotic biosynthesis monooxygenase [PF03992.18, score=25.5]; EF hand [PF13202.8, score=23.2]} {Human: ENSG00000123119, NECAB1, N-terminal EF-hand calcium binding protein 1, [Score=187, Expect=1e-55]} {Mouse: ENSMUSG00000040536, Necab1, N-terminal EF-hand calcium binding protein 1, [Score=182, Expect=1e-53]} {RNA1310_5770} {RNA815_27367}
2.	MligTC455_40575	357	7.45	Mlig455_055983, Mlig455_056092	Neo: - Age: -		3.438	0.857	0.877	-	0.740	0.964	-	Mlig455_055983 {REF} {Length: 1687} {Pfam: Bacterial protein of unknown function (DUF948) [PF06103.13, score=23.6]; IRSp53/MIM homology domain [PF08397.13, score=21.5]} {RNA1509_35632} {RNA1310_13000.1} {RNA815_16057} Mlig455_056092 {REF} {Length: 1986} {Pfam: IRSp53/MIM homology domain [PF08397.13, score=20.9]} {RNA1509_35632} {RNA1310_13000.1, RNA1509_35632} {RNA1509_35632, RNA815_16057}
3.	MligTC455_45177	162	3.39	Mlig455_003115	Neo: - Age: - Region-enriched R2: 3.498/0.00968		2.684	0.862	-	-	0.854	0.968	-	Mlig455_003115 {REF} {Length: 1689} {RNA1310_35114} {RNA815_16921}
4.	MligTC455_19442	244	5.09	Mlig455_002080	Neo: - Age: logFC(26M/2M)=-0.526		2.626	-	0.836	-	0.965	0.825	-	Mlig455_002080 {REF} {Length: 2265} {Pfam: Aldehyde ferredoxin oxidoreductase, N-terminal domain [PF02730.17, score=18.6]} {RNA1509_40470} {RNA1310_22476.3} {RNA815_16128}
5.	MligTC455_25183	587	12.22	Mlig455_005102	Neo: - Age: Down-Up-Down Region-enriched R8: 2.221/0.00519		2.52	-	0.844	0.715	0.961	-	-	Mlig455_005102 {REF} {Length: 3024} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=136.2]} {Celegans: WBGene00009073, delm-1, DEgenerin Linked to Mechanosensation, [Score=49.7, Expect=5e-06]} {Smed: dd_Smed_v6_20466_0_2, dd_Smed_v6_20466_0_2, [Score=84.3, Expect=5e-17]} {RNA1509_9013} {RNA1310_7298} {RNA815_2337}
6.	MligTC455_27983	78	1.62	Mlig455_044762	Neo: - Age: -	RASGRP1	1.739	-	-	0.972	-	0.767	-	Mlig455_044762 {REF} {Length: 3246} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=148.4]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=47.7]; EF-hand domain [PF13405.8, score=27.2]; EF-hand domain pair [PF13499.8, score=25.2]; EF hand [PF13202.8, score=24.3]; EF hand [PF00036.34, score=23.3]} {Human: ENSG00000172575, RASGRP1, RAS guanyl releasing protein 1, [RH, Score=451, Expect=3e-144]} {Mouse: ENSMUSG00000071042, Rasgrp3, RAS, guanyl releasing protein 3, [RH, Score=442, Expect=4e-143]; ENSMUSG00000027347, Rasgrp1, RAS guanyl releasing protein 1, [RH, Score=438, Expect=2e-140]} {Dmel: FBgn0001965, Sos, Son of sevenless, [Score=75.9, Expect=1e-13]} {Celegans: WBGene00009100, rgef-1, Rap Guanine nucleotide Exchange Factor homolog, [RH, Score=422, Expect=3e-136]} {Smed: dd_Smed_v6_15742_0_2, dd_Smed_v6_15742_0_2, [RH, Score=300, Expect=1e-93]} {RNA1509_53196} {RNA1310_11395} {RNA815_47062}
7.	MligTC455_28164	136	2.83	Mlig455_045835	Neo: - Age: -	LRRC9	1.732	-	-	-	0.768	0.964	-	Mlig455_045835 {REF} {Length: 10638} {Pfam: Leucine-rich repeat [PF14580.8, score=159.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=149.0]; Leucine rich repeat [PF13855.8, score=111.3]} {Human: ENSG00000131951, LRRC9, leucine rich repeat containing 9, [RH, Score=436, Expect=2e-129]} {Mouse: ENSMUSG00000021090, Lrrc9, leucine rich repeat containing 9, [RH, Score=639, Expect=0.0]} {Dmel: FBgn0039728, CG7896, [Score=74.7, Expect=6e-13]} {Celegans: WBGene00020266, T05H4.3, [RH, Score=80.1, Expect=8e-15]} {Smed: dd_Smed_v6_14851_0_1, dd_Smed_v6_14851_0_1, [RH, Score=369, Expect=2e-108]} {RNA1509_22179, RNA1509_44615} {RNA1310_1731, RNA1509_44615} {RNA1509_44615, RNA815_589.1}
8.	MligTC455_20342	1194	24.88	Mlig455_029911	Neo: - Age: -	BEST3	1.72	-	-	-	0.952	0.768	-	Mlig455_029911 {REF} {Length: 3751} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=136.1]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=116, Expect=4e-28]; ENSG00000039987, BEST2, bestrophin 2, [Score=113, Expect=3e-26]} {Mouse: ENSMUSG00000052819, Best2, bestrophin 2, [Score=113, Expect=2e-26]; ENSMUSG00000020169, Best3, bestrophin 3, [Score=111, Expect=1e-25]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=150, Expect=9e-39]} {Celegans: WBGene00021368, best-20, Bestrophin homolog, [Score=110, Expect=5e-26]} {Smed: dd_Smed_v6_1844_0_1, dd_Smed_v6_1844_0_1, [Score=246, Expect=5e-77]} {RNA1509_44647} {RNA1310_2310} {RNA815_10823}
9.	MligTC455_24910	147	3.05	Mlig455_064485	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.373		1.717	-	-	0.955	0.762	-	-	Mlig455_064485 {REF} {Length: 3010} {Pfam: Sushi repeat (SCR repeat) [PF00084.22, score=37.7]} {Smed: dd_Smed_v6_41498_0_1, dd_Smed_v6_41498_0_1, [Score=157, Expect=2e-41]} {RNA1509_58255} {RNA1310_11401, RNA1509_58255} {RNA1509_58255, RNA815_6604}
10.	MligTC455_38175	39	0.81	Mlig455_041332, Mlig455_056218	Neo: - Age: -	DNAH9	1.697	-	0.963	-	-	0.734	-	Mlig455_041332 {REF} {Length: 11655} {Pfam: Dynein heavy chain, N-terminal region 1 [PF08385.14, score=560.7]; Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=503.4]; Dynein heavy chain, N-terminal region 2 [PF08393.15, score=327.1]; AAA domain (dynein-related subfamily) [PF07728.16, score=68.8]; AAA domain [PF13401.8, score=24.4]; P-loop containing dynein motor region [PF12775.9, score=21.7]; AAA domain [PF13238.8, score=21.3]; AAA ATPase domain [PF13191.8, score=19.6]} {Human: ENSG00000007174, DNAH9, dynein axonemal heavy chain 9, [Score=2544, Expect=0.0]; ENSG00000187775, DNAH17, dynein axonemal heavy chain 17, [Score=2525, Expect=0.0]} {Mouse: ENSMUSG00000056752, Dnah9, dynein, axonemal, heavy chain 9, [Score=2547, Expect=0.0]; ENSMUSG00000033987, Dnah17, dynein, axonemal, heavy chain 17, [Score=2516, Expect=0.0]} {Dmel: FBgn0013812, Dhc93AB, Dynein heavy chain at 93AB, [Score=2306, Expect=0.0]} {Celegans: WBGene00000962, dhc-1, Dynein heavy chain, cytoplasmic, [Score=573, Expect=8e-167]} {Smed: dd_Smed_v6_3670_0_1, dd_Smed_v6_3670_0_1, [Score=2819, Expect=0.0]} {RNA1509_7397} {RNA1310_128.1} {RNA815_30.1} Mlig455_056218 {REF} {Length: 12040} {Pfam: Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=505.5]; Dynein heavy chain, N-terminal region 2 [PF08393.15, score=433.1]; P-loop containing dynein motor region [PF12775.9, score=256.0]; Dynein heavy chain AAA lid domain [PF17852.3, score=97.3]; AAA domain (dynein-related subfamily) [PF07728.16, score=87.1]; AAA domain [PF13401.8, score=29.7]; AAA ATPase domain [PF13191.8, score=29.6]; AAA domain [PF13604.8, score=25.4]; AAA domain [PF13245.8, score=25.3]; Sigma-54 interaction domain [PF00158.28, score=22.2]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=21.7]; AAA domain [PF13238.8, score=20.7]; Sigma-54 interaction domain [PF14532.8, score=19.9]} {Human: ENSG00000007174, DNAH9, dynein axonemal heavy chain 9, [Score=2583, Expect=0.0]; ENSG00000187775, DNAH17, dynein axonemal heavy chain 17, [Score=2573, Expect=0.0]} {Mouse: ENSMUSG00000033987, Dnah17, dynein, axonemal, heavy chain 17, [Score=2600, Expect=0.0]; ENSMUSG00000056752, Dnah9, dynein, axonemal, heavy chain 9, [Score=2590, Expect=0.0]} {Dmel: FBgn0013812, Dhc93AB, Dynein heavy chain at 93AB, [Score=2405, Expect=0.0]} {Celegans: WBGene00000962, dhc-1, Dynein heavy chain, cytoplasmic, [Score=632, Expect=0.0]} {Smed: dd_Smed_v6_3670_0_1, dd_Smed_v6_3670_0_1, [Score=2818, Expect=0.0]} {RNA1509_140, RNA1509_15019} {RNA1310_737, RNA1509_15019} {RNA1509_15019, RNA815_30.1}
11.	MligTC455_38357	22	0.46	Mlig455_053059	Neo: - Age: -		0.972	-	0.972	-	-	-	-	Mlig455_053059 {REF} {Length: 2077} {RNA1509_42586} {RNA1310_61726} {RNA815_15862}
12.	MligTC455_54213	234	4.87	Mlig455_063513	Neo: - Age: Up-Up-Down		0.969	-	-	-	-	0.969	-	Mlig455_063513 {REF} {Length: 3523} {TRANSSPLICED} {RNA1509_50863, RNA1509_57676} {RNA1310_29489, RNA1509_50863, RNA1509_57676} {RNA1509_50863, RNA1509_57676, RNA815_22674}
13.	MligTC455_19846	421	8.77	Mlig455_008356	Neo: - Age: Down-Up-Up Region-enriched R2: 2.552/0.00697		0.968	-	-	-	0.968	-	-	Mlig455_008356 {REF} {Length: 1722} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=29.7]; Phosphotyrosine interaction domain (PTB/PID) [PF14719.8, score=25.1]} {Dmel: FBgn0035431, CG14968, [RH, Score=80.5, Expect=1e-17]} {Smed: dd_Smed_v6_16269_0_1, dd_Smed_v6_16269_0_1, [RH, Score=52.0, Expect=1e-07]} {RNA1509_28129} {RNA1310_26006, RNA1509_28129} {RNA1509_28129, RNA815_14793}
14.	MligTC455_39723	249	5.18	Mlig455_022693, Mlig455_022705	Neo: - Age: - Region-enriched R2: 3.177/0.00982		0.964	-	0.964	-	-	-	-	Mlig455_022693 {REF} {Length: 1190} {TRANSSPLICED} {RNA1310_27415} {RNA815_16060} Mlig455_022705 {REF} {Length: 1526} {TRANSSPLICED} {RNA1310_27415} {RNA815_16060}
15.	MligTC455_41892	7398	154.13	Mlig455_063755	Neo: - Age: Down-Down-Up Regeneration-depleted BL: -1.391 Regeneration-depleted R6: -1.348	TTPAL	0.96	-	-	-	0.960	-	-	Mlig455_063755 {REF} {Length: 1525} {Pfam: CRAL/TRIO domain [PF00650.22, score=66.8]; Divergent CRAL/TRIO domain [PF13716.8, score=20.1]} {Human: ENSG00000124120, TTPAL, alpha tocopherol transfer protein like, [Score=119, Expect=3e-30]} {Mouse: ENSMUSG00000017679, Ttpal, tocopherol (alpha) transfer protein-like, [Score=117, Expect=1e-29]} {Dmel: FBgn0053966, CG33966, [Score=117, Expect=3e-30]} {Celegans: WBGene00011962, T23G5.2, CRAL-TRIO domain-containing protein T23G5.2, [Score=48.9, Expect=3e-06]} {Smed: dd_Smed_v6_2760_0_1, dd_Smed_v6_2760_0_1, [Score=223, Expect=8e-71]} {RNA1509_18568, RNA1509_46435} {RNA1310_28769.1, RNA1509_18568} {RNA1509_18568, RNA815_2361}
16.	MligTC455_11401	391	8.15	Mlig455_013270, Mlig455_013343	Neo: - Age: Up-Down-Up		0.954	-	-	0.954	-	-	-	Mlig455_013270 {REF} {Length: 2537} {Celegans: WBGene00003010, lin-24, [Score=71.6, Expect=7e-14]} {RNA1310_28391} {RNA815_8262} Mlig455_013343 {REF} {Length: 2282} {Celegans: WBGene00003010, lin-24, [Score=71.6, Expect=7e-14]} {RNA1310_28391} {RNA815_8262}
17.	MligTC455_10064	68	1.41	Mlig455_029458, Mlig455_029482	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_029458 {REF} {Length: 1576} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=28.7]} {RNA1310_20120.1} {RNA815_50604} Mlig455_029482 {REF} {Length: 3696} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=29.0]} {RNA1310_20120.1} {RNA815_30795}
18.	MligTC455_44800	403	8.4	Mlig455_013948, Mlig455_039343	Neo: - Age: Down-Down-Up Region-enriched R8: 3.937/0.01062 Regeneration-downregulated BL: -8.303 Regeneration-depleted BL: -8.303		0.953	-	0.953	-	-	-	-	Mlig455_013948 {REF} {Length: 595} {RNA1509_58184} {RNA1310_30957} {RNA815_17521} Mlig455_039343 {REF} {Length: 595} {RNA1509_58184} {RNA1310_30957, RNA1509_58184} {RNA1509_58184, RNA815_17521}
19.	MligTC455_42645	144	3	Mlig455_012431	Neo: - Age: -	KRT8	0.95	-	0.950	-	-	-	-	Mlig455_012431 {REF} {Length: 3911} {Pfam: Intermediate filament protein [PF00038.23, score=141.4]; BRE1 E3 ubiquitin ligase [PF08647.13, score=19.8]; Protein of unknown function (DUF3450) [PF11932.10, score=18.3]} {Human: ENSG00000170421, KRT8, keratin 8, [RH, Score=109, Expect=9e-25]; ENSG00000185640, KRT79, keratin 79, [RH, Score=105, Expect=2e-23]} {Mouse: ENSMUSG00000063661, Krt73, keratin 73, [RH, Score=104, Expect=2e-23]} {Dmel: FBgn0010397, LamC, Lamin C, [Score=138, Expect=2e-34]} {Celegans: WBGene00002050, ifa-1, Intermediate filament protein ifa-1, [Score=246, Expect=3e-74]} {Smed: dd_Smed_v6_3871_0_1, dd_Smed_v6_3871_0_1, [Score=271, Expect=9e-84]} {RNA1310_10400} {RNA815_12264}

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